Clone LD06759 Report

Search the DGRC for LD06759

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:67
Well:59
Vector:pBS SK-
Associated Gene/TranscriptHsp23-RA
Protein status:LD06759.pep: gold
Preliminary Size:1078
Sequenced Size:880

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4463 2001-01-01 Release 2 assignment
CG4463 2001-10-10 Blastp of sequenced clone
CG4463 2003-01-01 Sim4 clustering to Release 3
Hsp23 2008-04-29 Release 5.5 accounting
Hsp23 2008-08-15 Release 5.9 accounting
Hsp23 2008-12-18 5.12 accounting

Clone Sequence Records

LD06759.complete Sequence

880 bp (880 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061081

> LD06759.complete
CGATAACAGCTAAAGCGAAAGTAACCTATCAACAAAAGAAGTTTATTCTT
TGAAGGAGAATCATCTTGAAGCAATTAAAAAACAAAAATGGCAAATATTC
CATTGTTGTTGAGCCTTGCCGACGATTTGGGCCGAATGTCGATGGTGCCC
TTCTATGAGCCCTACTACTGCCAGCGCCAGAGGAATCCCTACTTGGCCCT
GGTTGGACCGATGGAGCAGCAGCTGCGCCAGCTGGAGAAACAGGTGGGCG
CCTCGTCGGGATCGTCGGGAGCCGTGTCGAAAATCGGAAAGGATGGCTTC
CAGGTCTGCATGGATGTGTCGCACTTCAAGCCCAGCGAACTGGTGGTCAA
AGTGCAGGACAACTCCGTCCTGGTGGAGGGCAACCATGAGGAGCGCGAAG
ATGACCATGGCTTCATCACTCGTCACTTTGTCCGCCGCTATGCTCTGCCA
CCCGGTTATGAGGCTGATAAGGTGGCCTCCACCTTGTCCTCCGATGGTGT
CCTGACCATCAAGGTGCCCAAGCCACCGGCAATCGAGGATAAGGGCAACG
AGCGCATCGTTCAGATCCAGCAGGTGGGACCCGCCCATCTCAATGTGAAG
GAGAATCCCAAGGAGGCGGTGGAGCAGGACAATGGCAACGATAAGTAGAG
GACTCGTTCCGAGAGATGCCCTGCATTATTTAACCATTATCAAAGTCATA
CATCTGTTTTATAAGCTGTAGTTATCCAAGGACACTTCACTCATACACAA
TAGCCATTAAGGGTGTCCTGCTTTAATCTTAGTTTGGAATATGTATTACT
AAATTGGCGAAATTAATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD06759.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp23-RA 884 Hsp23-RA 28..848 1..821 4105 100 Plus
Hsp27-RA 1220 Hsp27-RA 383..526 292..435 315 81.2 Plus
Hsp26-RA 1010 Hsp26-RA 495..646 289..440 265 78.2 Plus
Hsp26-RA 1010 Hsp26-RA 691..807 485..601 195 77.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9373808..9374630 1..820 4005 99.4 Plus
chr3L 24539361 chr3L 9368509..9368821 601..289 335 73.8 Minus
chr3L 24539361 chr3L 9376352..9376495 292..435 315 81.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9381911..9382731 1..821 4105 100 Plus
3L 28110227 3L 9376621..9376933 601..289 335 73.8 Minus
3L 28110227 3L 9384447..9384590 292..435 315 81.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9375011..9375831 1..821 4105 100 Plus
3L 28103327 3L 9377547..9377690 292..435 315 81.2 Plus
3L 28103327 3L 9369882..9370033 440..289 265 78.2 Minus
3L 28103327 3L 9369721..9369837 601..485 195 77.7 Minus
Blast to na_te.dros performed on 2019-03-16 11:14:14 has no hits.

LD06759.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:15:22 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9373808..9374630 1..820 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:38:52 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 1..561 88..648 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:34:14 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 1..561 88..648 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:09:23 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 1..561 88..648 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:18:41 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 1..561 88..648 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:00 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 1..561 88..648 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:34:21 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 28..847 1..820 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:14 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 28..847 1..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:09:23 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 30..849 1..820 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:18:41 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 28..847 1..820 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:00 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp23-RA 30..849 1..820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:22 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9381911..9382730 1..820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:22 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9381911..9382730 1..820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:22 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9381911..9382730 1..820 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:09:23 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9375011..9375830 1..820 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:38:45 Download gff for LD06759.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9375011..9375830 1..820 100   Plus

LD06759.hyp Sequence

Translation from 87 to 647

> LD06759.hyp
MANIPLLLSLADDLGRMSMVPFYEPYYCQRQRNPYLALVGPMEQQLRQLE
KQVGASSGSSGAVSKIGKDGFQVCMDVSHFKPSELVVKVQDNSVLVEGNH
EEREDDHGFITRHFVRRYALPPGYEADKVASTLSSDGVLTIKVPKPPAIE
DKGNERIVQIQQVGPAHLNVKENPKEAVEQDNGNDK*

LD06759.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp23-PB 186 CG4463-PB 1..186 1..186 966 100 Plus
Hsp23-PA 186 CG4463-PA 1..186 1..186 966 100 Plus
Hsp26-PB 208 CG4183-PB 80..201 62..183 457 68.9 Plus
Hsp26-PA 208 CG4183-PA 80..201 62..183 457 68.9 Plus
Hsp27-PB 213 CG4466-PB 54..196 29..177 422 57 Plus

LD06759.pep Sequence

Translation from 87 to 647

> LD06759.pep
MANIPLLLSLADDLGRMSMVPFYEPYYCQRQRNPYLALVGPMEQQLRQLE
KQVGASSGSSGAVSKIGKDGFQVCMDVSHFKPSELVVKVQDNSVLVEGNH
EEREDDHGFITRHFVRRYALPPGYEADKVASTLSSDGVLTIKVPKPPAIE
DKGNERIVQIQQVGPAHLNVKENPKEAVEQDNGNDK*

LD06759.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10691-PA 190 GF10691-PA 1..190 1..186 855 83.7 Plus
Dana\GF23739-PA 205 GF23739-PA 77..198 62..183 482 73 Plus
Dana\GF10692-PA 219 GF10692-PA 80..195 56..171 354 63.8 Plus
Dana\GF10689-PA 174 GF10689-PA 1..174 1..180 311 39.7 Plus
Dana\GF11829-PA 187 GF11829-PA 68..183 60..179 277 46.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15370-PA 187 GG15370-PA 1..187 1..186 953 96.3 Plus
Dere\GG14047-PA 208 GG14047-PA 80..201 62..183 462 69.7 Plus
Dere\GG15371-PA 212 GG15371-PA 75..191 55..171 366 64.1 Plus
Dere\GG14046-PA 445 GG14046-PA 42..221 7..163 325 44 Plus
Dere\GG15367-PA 173 GG15367-PA 1..171 1..177 300 40.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23707-PA 185 GH23707-PA 1..185 1..186 726 76.2 Plus
Dgri\GH16863-PA 185 GH16863-PA 1..185 1..186 726 76.2 Plus
Dgri\GH17008-PA 180 GH17008-PA 1..180 1..186 700 73.9 Plus
Dgri\GH14700-PA 204 GH14700-PA 43..197 21..186 483 56 Plus
Dgri\GH17009-PA 218 GH17009-PA 72..208 49..185 407 58.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp23-PB 186 CG4463-PB 1..186 1..186 966 100 Plus
Hsp23-PA 186 CG4463-PA 1..186 1..186 966 100 Plus
Hsp26-PB 208 CG4183-PB 80..201 62..183 457 68.9 Plus
Hsp26-PA 208 CG4183-PA 80..201 62..183 457 68.9 Plus
Hsp27-PB 213 CG4466-PB 54..196 29..177 422 57 Plus
Hsp27-PA 213 CG4466-PA 54..196 29..177 422 57 Plus
Hsp67Ba-PA 445 CG4167-PA 68..238 29..179 307 40.9 Plus
Hsp22-PB 174 CG4460-PB 1..174 1..180 287 39.7 Plus
Hsp22-PA 174 CG4460-PA 1..174 1..180 287 39.7 Plus
l(2)efl-PC 187 CG4533-PC 68..183 60..179 275 48.3 Plus
l(2)efl-PA 187 CG4533-PA 68..183 60..179 275 48.3 Plus
Hsp67Bc-PA 199 CG4190-PA 67..177 55..168 275 50 Plus
CG7409-PA 154 CG7409-PA 43..153 58..171 252 46.6 Plus
CG4461-PA 200 CG4461-PA 87..193 60..164 241 44.9 Plus
CG13133-PA 217 CG13133-PA 82..198 66..180 185 38.7 Plus
CG14207-PC 154 CG14207-PC 71..140 76..146 151 42.3 Plus
CG14207-PD 183 CG14207-PD 100..169 76..146 151 42.3 Plus
CG14207-PA 183 CG14207-PA 100..169 76..146 151 42.3 Plus
CG14207-PB 192 CG14207-PB 109..178 76..146 151 42.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13085-PA 185 GI13085-PA 1..185 1..186 733 78.3 Plus
Dmoj\GI12247-PA 211 GI12247-PA 76..209 54..185 439 61.9 Plus
Dmoj\GI13088-PA 212 GI13088-PA 65..192 47..173 435 69.5 Plus
Dmoj\GI13087-PA 209 GI13087-PA 46..204 25..186 423 53 Plus
Dmoj\GI12244-PA 183 GI12244-PA 1..168 1..174 404 46.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22446-PA 184 GL22446-PA 1..184 1..186 806 81.8 Plus
Dper\GL22443-PA 184 GL22443-PA 1..184 1..186 806 81.8 Plus
Dper\GL22632-PA 204 GL22632-PA 77..198 63..184 439 65.6 Plus
Dper\GL22447-PA 225 GL22447-PA 75..198 48..171 359 61.3 Plus
Dper\GL22445-PA 225 GL22445-PA 75..198 48..171 359 61.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18202-PA 184 GA18202-PA 1..184 1..186 806 81.8 Plus
Dpse\GA18011-PA 204 GA18011-PA 77..198 63..184 439 65.6 Plus
Dpse\GA18205-PA 225 GA18205-PA 75..198 48..171 359 61.3 Plus
Dpse\GA28726-PA 144 GA28726-PA 1..117 55..171 356 63.2 Plus
Dpse\GA24923-PA 196 GA24923-PA 44..177 36..168 304 48.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25142-PA 183 GM25142-PA 1..183 1..186 949 97.8 Plus
Dsec\GM24881-PA 211 GM24881-PA 80..211 62..186 456 66.7 Plus
Dsec\GM25143-PA 213 GM25143-PA 54..196 29..177 373 57 Plus
Dsec\GM24880-PA 403 GM24880-PA 42..222 7..163 313 42.3 Plus
Dsec\GM25140-PA 173 GM25140-PA 1..173 1..180 299 38.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14176-PA 177 GD14176-PA 1..177 1..186 912 94.1 Plus
Dsim\GD12933-PA 211 GD12933-PA 80..211 62..186 456 66.7 Plus
Dsim\GD14177-PA 213 GD14177-PA 74..196 55..177 371 64.2 Plus
Dsim\GD12932-PA 391 GD12932-PA 1..168 17..163 309 42.4 Plus
Dsim\GD14174-PA 173 GD14174-PA 1..173 1..180 299 38.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13834-PA 186 GJ13834-PA 1..186 1..186 760 78.8 Plus
Dvir\GJ11479-PA 216 GJ11479-PA 67..197 47..176 490 71 Plus
Dvir\GJ13836-PA 214 GJ13836-PA 66..197 47..180 485 71.1 Plus
Dvir\GJ13835-PA 211 GJ13835-PA 46..189 25..171 405 54.1 Plus
Dvir\GJ13837-PA 193 GJ13837-PA 44..184 36..184 318 47.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17636-PA 186 GK17636-PA 1..186 1..186 715 77.7 Plus
Dwil\GK16566-PA 216 GK16566-PA 6..196 7..173 427 50.8 Plus
Dwil\GK17637-PA 227 GK17637-PA 75..213 48..186 366 57.6 Plus
Dwil\GK17635-PA 177 GK17635-PA 1..176 1..181 311 42.2 Plus
Dwil\GK23172-PA 187 GK23172-PA 68..183 60..179 278 46.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20832-PA 186 GE20832-PA 1..186 1..186 966 97.8 Plus
Dyak\GE21250-PA 208 GE21250-PA 80..201 62..183 455 68.9 Plus
Dyak\GE20833-PA 212 GE20833-PA 75..191 55..171 364 64.1 Plus
Dyak\GE21249-PA 448 GE21249-PA 42..221 7..163 295 41.7 Plus
Dyak\GE20830-PA 173 GE20830-PA 1..166 1..172 293 40.3 Plus