BDGP Sequence Production Resources |
Search the DGRC for LD06785
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 67 |
Well: | 85 |
Vector: | pBS SK- |
Associated Gene/Transcript | tsr-RA |
Protein status: | LD06785.pep: gold |
Sequenced Size: | 709 |
Gene | Date | Evidence |
---|---|---|
tsr | 2009-06-08 | Manual selection by Joe Carlson |
709 bp assembled on 2009-07-31
GenBank Submission: BT089017.1
> LD06785.complete AGAAGGCGGAAGGTTAAACAGTATTTGTAAAATATATACTCGGCGAAGCA GCAATTTGAGAATTGTGAAAGCGAAAAACTACAGGAAAAATGGCTTCTGG TGTAACTGTGTCTGATGTCTGCAAGACTACATACGAGGAAATAAAGAAGG ACAAAAAGCATCGCTATGTCATCTTTTACATTCGCGATGAAAAGCAGATT GATGTGGAGACTGTGGCAGATCGCAACGCCGAGTACGACCAGTTTCTAGA AGATATCCAGAAATGCGGACCTGGAGAGTGCCGGTACGGACTGTTCGATT TCGAGTACATGCACCAGTGTCAAGGCACCTCTGAGAGTTCAAAGAAGCAA AAGCTGTTCCTTATGTCGTGGTGTCCCGATACTGCCAAGGTCAAGAAGAA GATGTTGTACTCCAGCTCCTTCGATGCTCTCAAGAAGTCGCTCGTGGGCG TCCAAAAGTATATACAAGCCACTGATCTTTCCGAAGCCTCCCGGGAAGCC GTCGAGGAGAAACTCCGGGCCACCGACCGCCAATAAACTGTACGAGCACT GTGCATTGCATTTAACAAACAAGGCATGCATGAAACAGCGATGGAAACAC GTATCCTGTTGAGATCGCCAATTTGTATGAGAATTTTCTACATAATTTGT ATTTTCAGTAGAAATAAAGAATGAAATATTTAACTTGAAAAAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tsr-RA | 969 | tsr-RA | 227..914 | 1..688 | 3440 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19930483..19930782 | 687..388 | 1485 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 19931019..19931213 | 286..92 | 975 | 100 | Minus |
chr2R | 21145070 | chr2R | 19930842..19930950 | 391..283 | 545 | 100 | Minus |
chr2R | 21145070 | chr2R | 19932695..19932787 | 93..1 | 465 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 24044452..24044752 | 688..388 | 1505 | 100 | Minus |
2R | 25286936 | 2R | 24044989..24045183 | 286..92 | 975 | 100 | Minus |
2R | 25286936 | 2R | 24044812..24044920 | 391..283 | 545 | 100 | Minus |
2R | 25286936 | 2R | 24046665..24046757 | 93..1 | 465 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 24045651..24045951 | 688..388 | 1505 | 100 | Minus |
2R | 25260384 | 2R | 24046188..24046382 | 286..92 | 975 | 100 | Minus |
2R | 25260384 | 2R | 24046011..24046119 | 391..283 | 545 | 100 | Minus |
2R | 25260384 | 2R | 24047864..24047956 | 93..1 | 465 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19930483..19930780 | 390..687 | 99 | <- | Minus |
chr2R | 19930844..19930949 | 284..389 | 100 | <- | Minus |
chr2R | 19931022..19931212 | 93..283 | 100 | <- | Minus |
chr2R | 19932696..19932787 | 1..92 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsr-RA | 1..447 | 90..536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsr-RA | 1..447 | 90..536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsr-RA | 1..447 | 90..536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsr-RA | 1..447 | 90..536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsr-RA | 80..766 | 1..687 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsr-RA | 80..766 | 1..687 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsr-RA | 49..735 | 1..687 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsr-RA | 49..735 | 1..687 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24044453..24044750 | 390..687 | 100 | <- | Minus |
2R | 24044814..24044919 | 284..389 | 100 | <- | Minus |
2R | 24044992..24045182 | 93..283 | 100 | <- | Minus |
2R | 24046666..24046757 | 1..92 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24044453..24044750 | 390..687 | 100 | <- | Minus |
2R | 24044814..24044919 | 284..389 | 100 | <- | Minus |
2R | 24044992..24045182 | 93..283 | 100 | <- | Minus |
2R | 24046666..24046757 | 1..92 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24044453..24044750 | 390..687 | 100 | <- | Minus |
2R | 24044814..24044919 | 284..389 | 100 | <- | Minus |
2R | 24044992..24045182 | 93..283 | 100 | <- | Minus |
2R | 24046666..24046757 | 1..92 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19931976..19932273 | 390..687 | 100 | <- | Minus |
arm_2R | 19932337..19932442 | 284..389 | 100 | <- | Minus |
arm_2R | 19932515..19932705 | 93..283 | 100 | <- | Minus |
arm_2R | 19934189..19934280 | 1..92 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24045670..24045967 | 390..687 | 100 | <- | Minus |
2R | 24046031..24046136 | 284..389 | 100 | <- | Minus |
2R | 24046209..24046399 | 93..283 | 100 | <- | Minus |
2R | 24047883..24047974 | 1..92 | 100 | Minus |
Translation from 89 to 535
> LD06785.hyp MASGVTVSDVCKTTYEEIKKDKKHRYVIFYIRDEKQIDVETVADRNAEYD QFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAK VKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEEKLRATDRQ*
Translation from 89 to 535
> LD06785.pep MASGVTVSDVCKTTYEEIKKDKKHRYVIFYIRDEKQIDVETVADRNAEYD QFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAK VKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEEKLRATDRQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13484-PA | 148 | GF13484-PA | 1..148 | 1..148 | 782 | 100 | Plus |
Dana\GF19223-PA | 148 | GF19223-PA | 1..147 | 1..147 | 438 | 54.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19959-PA | 148 | GG19959-PA | 1..148 | 1..148 | 782 | 100 | Plus |
Dere\GG18095-PA | 148 | GG18095-PA | 1..148 | 1..148 | 443 | 54.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20162-PA | 418 | GH20162-PA | 272..418 | 2..148 | 781 | 98.6 | Plus |
Dgri\GH12530-PA | 148 | GH12530-PA | 1..147 | 1..147 | 462 | 56.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tsr-PA | 148 | CG4254-PA | 1..148 | 1..148 | 771 | 100 | Plus |
CG6873-PA | 148 | CG6873-PA | 1..148 | 1..148 | 434 | 52.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20679-PA | 156 | GI20679-PA | 10..156 | 2..148 | 769 | 98.6 | Plus |
Dmoj\GI11187-PA | 148 | GI11187-PA | 1..148 | 1..148 | 487 | 61.5 | Plus |
Dmoj\GI11766-PA | 148 | GI11766-PA | 10..138 | 11..139 | 302 | 45.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10428-PA | 150 | GL10428-PA | 4..150 | 2..148 | 772 | 99.3 | Plus |
Dper\GL27011-PA | 152 | GL27011-PA | 1..151 | 1..147 | 353 | 43 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18060-PA | 154 | GA18060-PA | 8..154 | 2..148 | 775 | 99.3 | Plus |
Dpse\GA22341-PA | 152 | GA22341-PA | 1..151 | 1..147 | 349 | 42.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18279-PA | 148 | GM18279-PA | 1..148 | 1..148 | 782 | 100 | Plus |
Dsec\GM22788-PA | 148 | GM22788-PA | 1..148 | 1..148 | 437 | 52 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24977-PA | 148 | GD24977-PA | 1..148 | 1..148 | 782 | 100 | Plus |
Dsim\GD15622-PA | 68 | GD15622-PA | 6..68 | 86..148 | 199 | 60.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21900-PA | 148 | GJ21900-PA | 1..148 | 1..148 | 775 | 98.6 | Plus |
Dvir\GJ19548-PA | 148 | GJ19548-PA | 1..148 | 1..148 | 498 | 62.8 | Plus |
Dvir\GJ13471-PA | 148 | GJ13471-PA | 2..143 | 3..144 | 315 | 44.4 | Plus |