BDGP Sequence Production Resources |
Search the DGRC for LD06837
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 68 |
Well: | 37 |
Vector: | pBS SK- |
Associated Gene/Transcript | RfC38-RA |
Protein status: | LD06837.pep: gold |
Preliminary Size: | 1242 |
Sequenced Size: | 1266 |
Gene | Date | Evidence |
---|---|---|
CG6258 | 2001-01-01 | Release 2 assignment |
CG6258 | 2002-12-11 | Blastp of sequenced clone |
CG6258 | 2003-01-01 | Sim4 clustering to Release 3 |
RfC38 | 2008-04-29 | Release 5.5 accounting |
RfC38 | 2008-08-15 | Release 5.9 accounting |
RfC38 | 2008-12-18 | 5.12 accounting |
1266 bp (1266 high quality bases) assembled on 2002-12-11
GenBank Submission: AF160912
> LD06837.complete ACTAGAAATAGTCAGCGGAAAAGGCGCGCATTAAATTGTTTTGTTAAATT ACTTTTACGGTCAGAAAGTAACTTAAAATACATCCAATTACTATCGTATT TTACATGCGTTAACGAAATGGCACTTTGGGTGGATAAATACCGTCCGCGG GAGCTGTCCAAATTGGACTTCCACAAGGATCAAGCGGAGAACCTACGCAA CCTTTGCAAGCAGAGCGATTTTCCTCATCTGATGTTCTACGGACCCTCGG GTGCTGGCAAGAAGACACGCATCATGTGCCTGCTACGGGAGATGTACGGA TCCGGCGTTGAGCGGTTGAGGAGCGAGACCATGACATTCACCACGCCATC CAATCGGAAGGTAGAGGTGATGACGGTCAGCAGCAACTACCACTTGGAGG TGAATCCCTCCGACGCTGGCATGTACGACCGCACGGTGGTGATCGATCTC ATCAAGCAGGTGGCCCAGACGCATCAAATTGAGATTAGTGGCCAACGGGA ATTCAAGGTGATTGTAATTTCGGAGGGCGACGAACTCACCAAGGATGCCC AGCACGCCCTGCGCCGTACGATGGAGAAATATGTGGCCACGTGCCGGATA ATCATATCGGTGAACTCCACATCTCGGATCATTCCGGCCATACGGTCGCG TTGCCTGGGCATACGGGTGGCGGCTCCCAACGAAACGGAGATCGTGTCCA TCTTGCAGAACACTTGCAAGCGGGAGGGACTCGCACTGCCCGTGGAGCTG GCCAAACGGGTTGTGGACAAGTCGGAGCGCAATCTCAGGCGAGCACTTTT GATGCTGGAGGCCGCCAAGGTGGCCAAGGCGCCGTTTACCGCCAATCAGG AGATTCCCGACCTGGACTGGCAGGTGTTCCTGCGTGAGACAGCATCTCAG ATTATCAGTGAGCAAACGCCTGCCAAACTGGAGAAGATCCGCGAACGCCT GTACGAGCTACTCACGCAAGGCGTTCCACCTAATCTCATATTCCGCGGCC TGGTCGAACAGCTGGTTAACAATTGTGATATGTCCATCAAGGCAAAGACG CTCGAGTTCGCCACCGAGTACGAGCACCGGATGCAGTCCGGCGCCAAGCA CATTTTTCATCTTGAAGCGTTCGTCGCTCAGTTTATGAACATCTATAAAA AGTTCCTTTCTGAGCTGGACATGACGGATGATTTTTAAACGATTTACACG CTTTAGCATTTAATTCAAAAAACTTATTAAATAAACTGATTTAAACGAAA AAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 11127687..11128756 | 178..1247 | 100 | <- | Minus |
chr2L | 11128867..11129043 | 1..177 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC38-RA | 1..1071 | 118..1188 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC38-RA | 1..1071 | 118..1188 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC38-RA | 1..1071 | 118..1188 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC38-RA | 1..1071 | 118..1188 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC38-RA | 1..1071 | 118..1188 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC38-RA | 358..1604 | 1..1247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC38-RA | 358..1604 | 1..1247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC38-RA | 30..1276 | 1..1247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC38-RA | 358..1604 | 1..1247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC38-RA | 30..1276 | 1..1247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11128932..11130001 | 178..1247 | 100 | <- | Minus |
2L | 11130112..11130288 | 1..177 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11128932..11130001 | 178..1247 | 100 | <- | Minus |
2L | 11130112..11130288 | 1..177 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11128932..11130001 | 178..1247 | 100 | <- | Minus |
2L | 11130112..11130288 | 1..177 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 11128932..11130001 | 178..1247 | 100 | <- | Minus |
arm_2L | 11130112..11130288 | 1..177 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11128932..11130001 | 178..1247 | 100 | <- | Minus |
2L | 11130112..11130288 | 1..177 | 100 | Minus |
Translation from 0 to 1187
> LD06837.hyp TRNSQRKRRALNCFVKLLLRSESNLKYIQLLSYFTCVNEMALWVDKYRPR ELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYG SGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDL IKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRI IISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTCKREGLALPVEL AKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLDWQVFLRETASQ IISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNCDMSIKAKT LEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLSELDMTDDF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RfC38-PB | 356 | CG6258-PB | 1..356 | 40..395 | 1810 | 100 | Plus |
RfC38-PA | 356 | CG6258-PA | 1..356 | 40..395 | 1810 | 100 | Plus |
RfC3-PA | 332 | CG5313-PA | 13..321 | 43..378 | 267 | 25.9 | Plus |
CG8142-PA | 353 | CG8142-PA | 30..245 | 41..278 | 267 | 29 | Plus |
RfC4-PA | 331 | CG14999-PA | 18..228 | 43..281 | 235 | 27.6 | Plus |
Translation from 117 to 1187
> LD06837.pep MALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKT RIMCLLREMYGSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDA GMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRR TMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTC KREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLD WQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLV NNCDMSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLSEL DMTDDF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14225-PA | 356 | GF14225-PA | 1..356 | 1..356 | 1821 | 94.1 | Plus |
Dana\GF21175-PA | 352 | GF21175-PA | 30..340 | 3..332 | 291 | 27.6 | Plus |
Dana\GF15785-PA | 332 | GF15785-PA | 13..217 | 4..236 | 265 | 30.2 | Plus |
Dana\GF23886-PA | 331 | GF23886-PA | 18..218 | 4..232 | 236 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10322-PA | 356 | GG10322-PA | 1..356 | 1..356 | 1881 | 98 | Plus |
Dere\GG18160-PA | 353 | GG18160-PA | 30..245 | 2..239 | 273 | 29 | Plus |
Dere\GG10129-PA | 332 | GG10129-PA | 13..217 | 4..236 | 269 | 30.2 | Plus |
Dere\GG14218-PA | 331 | GG14218-PA | 18..228 | 4..242 | 237 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10966-PA | 356 | GH10966-PA | 1..356 | 1..356 | 1761 | 89.6 | Plus |
Dgri\GH18198-PA | 356 | GH18198-PA | 33..255 | 2..245 | 280 | 29.4 | Plus |
Dgri\GH13305-PA | 332 | GH13305-PA | 13..217 | 4..236 | 272 | 31.1 | Plus |
Dgri\GH15919-PA | 331 | GH15919-PA | 18..218 | 4..232 | 234 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RfC38-PB | 356 | CG6258-PB | 1..356 | 1..356 | 1810 | 100 | Plus |
RfC38-PA | 356 | CG6258-PA | 1..356 | 1..356 | 1810 | 100 | Plus |
RfC3-PA | 332 | CG5313-PA | 13..321 | 4..339 | 267 | 25.9 | Plus |
CG8142-PA | 353 | CG8142-PA | 30..245 | 2..239 | 267 | 29 | Plus |
RfC4-PA | 331 | CG14999-PA | 18..228 | 4..242 | 235 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18150-PA | 356 | GI18150-PA | 1..356 | 1..356 | 1757 | 88.5 | Plus |
Dmoj\GI18168-PA | 332 | GI18168-PA | 13..217 | 4..236 | 281 | 31.5 | Plus |
Dmoj\GI10150-PA | 354 | GI10150-PA | 31..240 | 2..233 | 275 | 29.7 | Plus |
Dmoj\GI16571-PA | 331 | GI16571-PA | 18..218 | 4..232 | 239 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18586-PA | 356 | GL18586-PA | 1..356 | 1..356 | 1824 | 93.8 | Plus |
Dper\GL14564-PA | 354 | GL14564-PA | 31..342 | 2..332 | 275 | 27.5 | Plus |
Dper\GL19009-PA | 333 | GL19009-PA | 13..217 | 4..236 | 269 | 31.5 | Plus |
Dper\GL12737-PA | 331 | GL12737-PA | 18..218 | 4..232 | 250 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19473-PA | 356 | GA19473-PA | 1..356 | 1..356 | 1824 | 93.8 | Plus |
Dpse\GA25212-PA | 333 | GA25212-PA | 13..217 | 4..236 | 273 | 31.9 | Plus |
Dpse\GA20846-PA | 354 | GA20846-PA | 31..342 | 2..332 | 269 | 27.2 | Plus |
Dpse\GA13416-PA | 331 | GA13416-PA | 18..218 | 4..232 | 250 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11127-PA | 351 | GM11127-PA | 1..349 | 1..348 | 1848 | 99.1 | Plus |
Dsec\GM18361-PA | 332 | GM18361-PA | 13..217 | 4..236 | 269 | 30.2 | Plus |
Dsec\GM22851-PA | 326 | GM22851-PA | 30..226 | 2..220 | 238 | 27.4 | Plus |
Dsec\GM14011-PA | 331 | GM14011-PA | 18..228 | 4..242 | 236 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22189-PA | 227 | GD22189-PA | 1..208 | 1..208 | 1123 | 100 | Plus |
Dsim\GD22190-PA | 128 | GD22190-PA | 1..128 | 229..356 | 678 | 99.2 | Plus |
Dsim\GD23698-PA | 332 | GD23698-PA | 13..217 | 4..236 | 269 | 30.2 | Plus |
Dsim\GD13291-PA | 331 | GD13291-PA | 18..228 | 4..242 | 236 | 27.6 | Plus |
Dsim\GD15662-PA | 208 | GD15662-PA | 1..100 | 140..239 | 158 | 38 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14536-PA | 356 | GJ14536-PA | 1..356 | 1..356 | 1757 | 89 | Plus |
Dvir\GJ23369-PA | 356 | GJ23369-PA | 33..255 | 2..245 | 287 | 30.2 | Plus |
Dvir\GJ14606-PA | 332 | GJ14606-PA | 13..217 | 4..236 | 274 | 30.6 | Plus |
Dvir\GJ12823-PA | 331 | GJ12823-PA | 18..218 | 4..232 | 239 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15241-PA | 356 | GK15241-PA | 1..356 | 1..356 | 1768 | 89.6 | Plus |
Dwil\GK15259-PA | 331 | GK15259-PA | 12..216 | 4..236 | 283 | 31.5 | Plus |
Dwil\GK25619-PA | 355 | GK25619-PA | 31..343 | 2..332 | 265 | 26.2 | Plus |
Dwil\GK10084-PA | 333 | GK10084-PA | 20..220 | 4..232 | 234 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12972-PA | 356 | GE12972-PA | 1..356 | 1..356 | 1895 | 98.9 | Plus |
Dyak\GE15569-PA | 353 | GE15569-PA | 30..245 | 2..239 | 271 | 28.6 | Plus |
Dyak\GE18941-PA | 332 | GE18941-PA | 13..217 | 4..236 | 270 | 30.2 | Plus |
Dyak\GE20646-PA | 331 | GE20646-PA | 18..228 | 4..242 | 238 | 27.6 | Plus |