Clone LD06894 Report

Search the DGRC for LD06894

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:68
Well:94
Vector:pBS SK-
Associated Gene/TranscriptCG1968-RB
Protein status:LD06894.pep: gold
Preliminary Size:2022
Sequenced Size:2091

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1968 2001-01-01 Release 2 assignment
CG1968 2001-10-10 Blastp of sequenced clone
CG1968 2003-01-01 Sim4 clustering to Release 3
CG1968 2008-04-29 Release 5.5 accounting
CG1968 2008-08-15 Release 5.9 accounting
CG1968 2008-12-18 5.12 accounting

Clone Sequence Records

LD06894.complete Sequence

2091 bp (2091 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061082

> LD06894.complete
TTTAAGATGAGCTCGACGCAGGAAAAACCGGAGGAGCTGGACAGGATCCA
GAAGAGGGTCAACAAGATCCTTGAGGCTCGCCTGGAGTCGGACAAGGACA
CATTGGATGCTCTGAGTGGTCTGTCCACTTTCTTCACGGAGAATACGCTG
CAGAATCGCAGGAATCTGCGTAGCCAGATCGAACACCGCTCCGTGGGCAT
CAACGAGAACTTTCTGAAGGCCTTCCGCCAGGTGAAGCTCTCGCTGGATG
CCGTGTGCGAAGATCTGGACACGATGGCCACGTCAGTAGAGACGATGAAA
TCGGATCTGGAGACCTCAAAGGCGCTCACCAAGGATCTGATCAAGCAGAC
CAACACCATGCAGCGGGAGAGGGACCGCTTGGAGGTGCATAAGCAGATTG
CGCAAGCTTTTCTGGCTCGTTTTCAGCTAAGCGGAGCCGAGCACCAGTTA
CTATATGGCGCTGCCAAAGATGCACCCATTGTGGCGGACTTCTTTCGCGT
ATTGGACAGAGTACAAAGCATTCACGCTGACTGCCGGCTGCTGATGCAGT
GTGGATACCAAACAGCAGCCATCGACATCATGGAGGAGATGACATTGCAT
CAGGAGGGCGCTCTGGAAAGGCTCTACCGATGGACTCAGAACCACTGTCG
CAGTTTGGAAAACAACGAAATAGGTCCGCTGATTGTGGAAGCCATGAGCC
GGCTGCAGGACCGTCCGGTGCTATTCAAATACGTCATTGACGAATACGCC
ATTGCGAGAAGAGCGGTTTTGGTGCGTCAGTTCATTGAGGCCTTGACGGA
AGGGGGTCCTGGAGGGAACCCCAAGCCCATTGAGCTGCATGCCCACGATC
CGAAGAGATATATTGGCGATATGTTTGCGTGGCTGCATCAGAGCATTCCC
ACCGAAAAGGAGAACCTATCTTTGCTGTTCAAAAAGTGCGATAAGCAGGG
TAAGATAAGAAAATGCATACATTATGGCACCAAAATAGTGCTCTTCGTTT
TGCAATAGATATTTCCGACCAGCTGCAGAACGCTTTGGGCTACATAGCCG
ATGGAGTTTGTCATCCTCTAAAGGTTCGAGTGGAGACGATACTGCAGGCG
GAGAAGGACACTATTGTGTTGTTTACCATTTCCAATCTGTTACGCTTCTA
CCAGCAAATAATGCGCCAGGTGGTGCAGGGCGGCAGCCTGGAGGAGTGTT
TGGTGGAGCTTCAGAAGAGCAGTGAGCAGATCTACCTGGGCGCCTTGGCT
GCCCAGGTGAGAAGTGTTTTGCAGCGTCCCTCTGGAGGATCGGGCCTGGC
CTTGGAACCGCCGCAAAGGGATCTTGTACCGCCGCCAAGCGTGGCACGTT
TGCTAAATATGCTCAAAGAGATTCTTTCGGTGGCCACCATGGTCGATGGC
CGGCAGGCCGACATAACAAAGATCGTGAGCTGCGTGATAGATCCGCTGCT
GCAGTCCGTGCAAGAAAGTGCTGCCCATCTGCCCACCGTGGACATGGGTG
TGTACCTTTTGAACTGTCTGCATCACATGCAAAGCTCGCTGGCTGTCTAC
GAATATATGGATGAGCGCGTGGAGCGGCTGCAGGCGCAGTCGGATGCCCA
GTTGGACACACTGACCTCCGAGCAGGCATCATCGCTGGTGGCGAACCTCA
ATCTGGGTCCCATCTACGCCATTCTGCAGAGCAATCAATCTAAAATAGAA
ACAAACCTGCTGAAGATCTTCATGTCCAAGATGGACGCCTTTCTGGAACT
ACCCGATGTATTGCTCCTGCCGCAGGTGCAGCTCATAATGTCCAGCAGTC
ACCGGGCCGCCGTTCAGAAGCGATCCTTCAACGTGATCGTGGCCATCTAC
AAGCAGATCTACGAACGCGTCCACGATCCGGCCAACGGCTTCGAGCAGCC
GGAGCAGCTGCTGCACAGAACGCCGGAGCAGGTGGCTCACATCCTGACCT
CCACTTAGTGGATTGGGTATTCCAATTTCTATTGTGCATTACTATAATTT
ATATGTATTTATATGTGGGGAAGTTTATTGTTAGCGTGGTAAAATAAAAA
ACCAATCGTATATCTGATGCGGAAAAAAAAAAAAAAAAAAA

LD06894.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1968-RB 2115 CG1968-RB 44..2115 1..2072 10360 100 Plus
CG1968-RA 2148 CG1968-RA 1084..2148 1008..2072 5325 100 Plus
CG1968-RA 2148 CG1968-RA 136..1084 1..949 4745 100 Plus
TXBP181-like-RA 2684 TXBP181-like-RA 2604..2684 2073..1993 405 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5175212..5176555 729..2072 6720 100 Plus
chr2R 21145070 chr2R 5174523..5175156 95..728 3170 100 Plus
chr2R 21145070 chr2R 5174371..5174467 1..97 485 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9287683..9289027 729..2073 6725 100 Plus
2R 25286936 2R 9286994..9287627 95..728 3170 100 Plus
2R 25286936 2R 9286842..9286938 1..97 485 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9288882..9290226 729..2073 6725 100 Plus
2R 25260384 2R 9288193..9288826 95..728 3170 100 Plus
2R 25260384 2R 9288041..9288137 1..97 485 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:14:17 has no hits.

LD06894.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:15:26 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5174371..5174466 1..96 100 -> Plus
chr2R 5174525..5175156 97..728 100 -> Plus
chr2R 5175212..5176555 729..2072 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:38:56 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 1..1002 7..1008 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:41:08 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 1..1002 7..1008 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:11:54 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 1..1002 7..1008 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:05 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 1..1002 7..1008 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:01 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 1..1002 7..1008 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:59 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 7..2078 1..2072 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:41:08 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 7..2078 1..2072 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:11:54 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 16..2087 1..2072 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:05 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 7..2078 1..2072 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:01 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
CG1968-RB 16..2087 1..2072 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:26 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9286842..9286937 1..96 100 -> Plus
2R 9286996..9287627 97..728 100 -> Plus
2R 9287683..9289026 729..2072 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:26 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9286842..9286937 1..96 100 -> Plus
2R 9286996..9287627 97..728 100 -> Plus
2R 9287683..9289026 729..2072 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:26 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9286842..9286937 1..96 100 -> Plus
2R 9286996..9287627 97..728 100 -> Plus
2R 9287683..9289026 729..2072 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:11:54 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5174347..5174442 1..96 100 -> Plus
arm_2R 5174501..5175132 97..728 100 -> Plus
arm_2R 5175188..5176531 729..2072 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:15 Download gff for LD06894.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9288195..9288826 97..728 100 -> Plus
2R 9288882..9290225 729..2072 100   Plus
2R 9288041..9288136 1..96 100 -> Plus

LD06894.hyp Sequence

Translation from 0 to 1007

> LD06894.hyp
FKMSSTQEKPEELDRIQKRVNKILEARLESDKDTLDALSGLSTFFTENTL
QNRRNLRSQIEHRSVGINENFLKAFRQVKLSLDAVCEDLDTMATSVETMK
SDLETSKALTKDLIKQTNTMQRERDRLEVHKQIAQAFLARFQLSGAEHQL
LYGAAKDAPIVADFFRVLDRVQSIHADCRLLMQCGYQTAAIDIMEEMTLH
QEGALERLYRWTQNHCRSLENNEIGPLIVEAMSRLQDRPVLFKYVIDEYA
IARRAVLVRQFIEALTEGGPGGNPKPIELHAHDPKRYIGDMFAWLHQSIP
TEKENLSLLFKKCDKQGKIRKCIHYGTKIVLFVLQ*

LD06894.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1968-PB 333 CG1968-PB 1..333 3..335 1704 100 Plus
CG1968-PA 630 CG1968-PA 1..314 3..316 1604 100 Plus

LD06894.pep Sequence

Translation from 6 to 1007

> LD06894.pep
MSSTQEKPEELDRIQKRVNKILEARLESDKDTLDALSGLSTFFTENTLQN
RRNLRSQIEHRSVGINENFLKAFRQVKLSLDAVCEDLDTMATSVETMKSD
LETSKALTKDLIKQTNTMQRERDRLEVHKQIAQAFLARFQLSGAEHQLLY
GAAKDAPIVADFFRVLDRVQSIHADCRLLMQCGYQTAAIDIMEEMTLHQE
GALERLYRWTQNHCRSLENNEIGPLIVEAMSRLQDRPVLFKYVIDEYAIA
RRAVLVRQFIEALTEGGPGGNPKPIELHAHDPKRYIGDMFAWLHQSIPTE
KENLSLLFKKCDKQGKIRKCIHYGTKIVLFVLQ*

LD06894.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18958-PA 630 GF18958-PA 1..314 1..314 1644 96.2 Plus
Dana\GF11818-PA 439 GF11818-PA 1..123 192..314 696 100 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23431-PA 630 GG23431-PA 1..314 1..314 1669 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21871-PA 625 GH21871-PA 1..323 1..323 1519 85.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1968-PB 333 CG1968-PB 1..333 1..333 1704 100 Plus
CG1968-PA 630 CG1968-PA 1..314 1..314 1604 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20374-PA 625 GI20374-PA 6..323 9..323 1516 87.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17582-PA 628 GL17582-PA 1..314 1..314 1557 90.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15161-PA 628 GA15161-PA 1..314 1..314 1562 91.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21114-PA 630 GM21114-PA 1..314 1..314 1685 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10648-PA 503 GD10648-PA 1..314 1..314 1675 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22100-PA 625 GJ22100-PA 6..323 9..323 1524 87.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23282-PA 630 GK23282-PA 1..315 1..313 1523 87.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19269-PA 630 GE19269-PA 1..314 1..314 1684 99.4 Plus