Clone LD07058 Report

Search the DGRC for LD07058

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:70
Well:58
Vector:pBS SK-
Associated Gene/TranscriptCG12713-RA
Protein status:LD07058.pep: gold
Preliminary Size:1460
Sequenced Size:1373

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12713 2001-01-01 Release 2 assignment
CG12713 2001-10-10 Blastp of sequenced clone
CG12713 2003-01-01 Sim4 clustering to Release 3
CG12713 2008-04-29 Release 5.5 accounting
CG12713 2008-08-15 Release 5.9 accounting
CG12713 2008-12-18 5.12 accounting

Clone Sequence Records

LD07058.complete Sequence

1373 bp (1373 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061083

> LD07058.complete
TTAAACAGCTGTTTATTCTGGCGCTCTTTCATACGTTCGCTGAAATAGTT
TTGTATTTCTGGCCGGAAATGATGTCCCAAATTCCGGATTTGGCCGGCGG
AAATGGGCAACAGAAGCGAAAGATTCTGAGCGGCGGCGAATACAATAAGA
TTTGCCGGTTTATCAACGGCTTCCACGGCTTGGCCATCGACTGCGAGTTC
GAGTTGAGGAATCGCTTCTTCAGGGACGTGGAGCCAATGGCATTGACATG
CATCCTGCAGTCGGAGCTTTTTAACCGGTCGCGTGGTCACTGGAAGCAGG
ATCAGCGCGGGAAAAGGCTTCTCAAAGCCTACGAGGAGCAGAAAAACCTA
TACTACGACAATGCCCTACTGATCCGAATGGCTTGTGCCGAAGCACTGAA
CCCGGTGGCTCTCTGCAGGATGTTGCTGCAGGAGAAGTACAAGGATCGGC
ATCGATCGCACATCTCACAGCTTCTTAGGCATCCGCATCTTATCGACGAT
CCCAAGCTGGCGGCCAATGTGCAGCAGTGCATAGTCAGCGACAATCAAGA
GGGATCCATAACGGACCTGCGACGCCGCATAGTTGGCGAGGAGTACGAGC
TTAAGCTTAAGAATCTGGCTAAGGAGGCGGGTATCCATTTCTACGACGAG
AAAGATTTGCGACGCATGGGATATGACAAGACGCCGGACATCAAGATGAT
CCTGCCATTTCTTTACAAAGGCTCTGTGATCAACTGGATCGAGAGCAAGG
CCAATTTTGGGGACACCAAGGGACACAAGTCGAACATCCAACAGCAGCTG
CAAAGCTACTGCAATCGTTTTGGTCCTGGAATGATAATCTATTGGTTTGG
GTACCACGAGGAAACGCCTGCGCTGCCGGATAACAACATTGGCATTACAG
TACTCGCTGATTTTCCGGCAAAAGAAGATTTGGTTTTTATGCAACTCGCG
CATGAAGAATACTCCGCTGAGACTCCGACAACGAAAGAGGACAGCAGTTC
CGGGAGTCAACCTATTGTAGCTGAATGTCCAACCAAAGAACTGAAAAAAC
TTTCATGAAACTGAAAGTGCAGGGAAATCGTTAATGTATACTTTTTAACT
ATAGAACGAAATGTGCTTGTTAAAACAATGTACATAGAAAGCCTAAATTT
TAAGTGGGATGTTGCCAAATGTTAAGTAGCATTGAAACCATCAAAGACAG
GAATGCTTTGCATTTATACACTAACCATAAGATTAGACAATGCTTCTGCA
GCAATAACTTTTCTCTTTAGTTTTAACAATTATACTGTTTTTATTGTATT
TATAAATTCTCATTTACATGATGTATTCAAAGGTTTTTTAGTAAAAAAAT
CGTATAAAAAAAAAAAAAAAAAA

LD07058.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-RA 1565 CG12713-RA 90..1450 1..1361 6790 99.9 Plus
CG18081-RA 1030 CG18081-RA 872..1030 1361..1203 780 99.3 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15823236..15823774 817..1355 2680 99.8 Plus
chr3L 24539361 chr3L 15822683..15823171 329..817 2445 100 Plus
chr3L 24539361 chr3L 15822287..15822614 1..328 1640 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15833409..15833953 817..1361 2710 99.8 Plus
3L 28110227 3L 15832856..15833344 329..817 2445 100 Plus
3L 28110227 3L 15832460..15832787 1..328 1640 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15826509..15827053 817..1361 2710 99.8 Plus
3L 28103327 3L 15825956..15826444 329..817 2445 100 Plus
3L 28103327 3L 15825560..15825887 1..328 1640 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:01:55 has no hits.

LD07058.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:02:33 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15822287..15822614 1..328 100 -> Plus
chr3L 15822683..15823171 329..817 100 -> Plus
chr3L 15823237..15823774 818..1355 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:39:05 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 1..990 69..1058 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:52 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 1..990 69..1058 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:25 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 1..990 69..1058 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:54 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 1..990 69..1058 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:35 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 1..990 69..1058 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:42 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 1..1351 1..1351 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:51 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 1..1351 1..1351 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:25 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 1..1351 5..1355 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:54 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 1..1351 1..1351 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:35 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 1..1351 5..1355 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:02:33 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15832460..15832787 1..328 100 -> Plus
3L 15832856..15833344 329..817 100 -> Plus
3L 15833410..15833947 818..1355 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:02:33 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15832460..15832787 1..328 100 -> Plus
3L 15832856..15833344 329..817 100 -> Plus
3L 15833410..15833947 818..1355 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:02:33 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15832460..15832787 1..328 100 -> Plus
3L 15832856..15833344 329..817 100 -> Plus
3L 15833410..15833947 818..1355 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:25 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15825560..15825887 1..328 100 -> Plus
arm_3L 15825956..15826444 329..817 100 -> Plus
arm_3L 15826510..15827047 818..1355 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:01 Download gff for LD07058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15825560..15825887 1..328 100 -> Plus
3L 15825956..15826444 329..817 100 -> Plus
3L 15826510..15827047 818..1355 100   Plus

LD07058.hyp Sequence

Translation from 2 to 1057

> LD07058.hyp
KQLFILALFHTFAEIVLYFWPEMMSQIPDLAGGNGQQKRKILSGGEYNKI
CRFINGFHGLAIDCEFELRNRFFRDVEPMALTCILQSELFNRSRGHWKQD
QRGKRLLKAYEEQKNLYYDNALLIRMACAEALNPVALCRMLLQEKYKDRH
RSHISQLLRHPHLIDDPKLAANVQQCIVSDNQEGSITDLRRRIVGEEYEL
KLKNLAKEAGIHFYDEKDLRRMGYDKTPDIKMILPFLYKGSVINWIESKA
NFGDTKGHKSNIQQQLQSYCNRFGPGMIIYWFGYHEETPALPDNNIGITV
LADFPAKEDLVFMQLAHEEYSAETPTTKEDSSSGSQPIVAECPTKELKKL
S*

LD07058.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-PA 329 CG12713-PA 1..329 23..351 1745 100 Plus

LD07058.pep Sequence

Translation from 68 to 1057

> LD07058.pep
MMSQIPDLAGGNGQQKRKILSGGEYNKICRFINGFHGLAIDCEFELRNRF
FRDVEPMALTCILQSELFNRSRGHWKQDQRGKRLLKAYEEQKNLYYDNAL
LIRMACAEALNPVALCRMLLQEKYKDRHRSHISQLLRHPHLIDDPKLAAN
VQQCIVSDNQEGSITDLRRRIVGEEYELKLKNLAKEAGIHFYDEKDLRRM
GYDKTPDIKMILPFLYKGSVINWIESKANFGDTKGHKSNIQQQLQSYCNR
FGPGMIIYWFGYHEETPALPDNNIGITVLADFPAKEDLVFMQLAHEEYSA
ETPTTKEDSSSGSQPIVAECPTKELKKLS*

LD07058.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24096-PA 309 GF24096-PA 1..302 8..310 1232 75.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15932-PA 332 GG15932-PA 1..332 2..329 1545 85.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17204-PA 300 GH17204-PA 8..298 16..305 1165 73.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-PA 329 CG12713-PA 1..329 1..329 1745 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13967-PA 294 GI13967-PA 8..288 16..293 1086 69.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25214-PA 330 GL25214-PA 7..318 16..318 1252 73.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23730-PA 331 GA23730-PA 8..319 16..318 1251 73.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25561-PA 326 GM25561-PA 1..326 1..329 1654 94.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14576-PA 326 GD14576-PA 1..326 1..328 1655 94.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14105-PA 295 GJ14105-PA 14..293 16..293 1134 73.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20620-PA 307 GK20620-PA 1..304 8..314 1095 65.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23166-PA 332 GE23166-PA 1..332 2..329 1596 89.5 Plus
Dyak\GE22282-PA 332 GE22282-PA 1..332 2..329 1594 88.9 Plus