Clone LD07116 Report

Search the DGRC for LD07116

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:71
Well:16
Vector:pBS SK-
Associated Gene/TranscriptCG31915-RA
Protein status:LD07116.pep: gold
Sequenced Size:2456

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31915 2007-09-25 DGC5 pick
CG31915 2008-04-29 Release 5.5 accounting
CG31915 2008-04-29 Picked prior to 5.5
CG31915 2008-08-15 Release 5.9 accounting
CG31915 2008-12-18 5.12 accounting

Clone Sequence Records

LD07116.complete Sequence

2456 bp assembled on 2007-12-12

GenBank Submission: BT031322

> LD07116.complete
ACGAACCGGACGCTTCCGCTCCGCCAGATTGTGTACTGTGACCCCTTTGA
ACCCGGCGTTGCGTTTAATCGATGACGTGGAGATGAACAAACAAGTTATA
TTCGGCCTGCTCCTCGCTTGCATTTTGGTGTGCATTTCAGGACAGGATGA
GGAGGATTACCAGGAGTCGCCAACGGTACTGATTGCCCTGCTGGTGCGGA
ACAAAGCCCACATACTGCCCATGTTCCTCAGCTACCTGGAGCAGCAGGAC
TATCCAAAGGAAAGAATAGCAATTTGGTTGCGCTGTGATCACAGCAACGA
TGACAGCATAGAGCTATTGCGGCAGTGGCTGGACAACTCGGGGGATCTTT
ATCACAGCGTAAGCTACGAATTTAAGCCGGAGGAGCAGAGCTTTGTCAAC
GGGACTTCACCGTACGAGTGGCCCGCATCGCGTTTCAAGCACCTAATCGC
CCTGAAAGAGGAGGCCTTTCAGTATGGTCGCGATATTTGGGCTGACTACG
TGTTTTTCCTGGACGCCGATGTCTTGCTAACTTCAAAAGATTCGCTAAAA
GTCCTCACCCGACTCCAATTACCAATTGTGGCTCCCATGCTGATCTCGGA
GAGCTTATACTCGAATTTCTGGTGTGGCATGACGGAGGACTACTACTACA
GACGCACCGATGAGTACAAGGAAATCTATCATGTGAAAAAGCAAGGCAGC
TTCCCAGTGCCAATGGTCCACACAGCCGTTTTGGTGAACATGAACCATCG
AGCGGTTAGGAATCTCACCTTCGATAGGAACAAGCTGGTGGAATTGCAGA
AATCCCGACAGCAAGAGCCACTGTACGATGGACCAGCCGATGACATCATT
GTGTTCGCCATATCGGCCAACAGTTCAGGCATTCCCTTGCACATTTGCAA
CGACATAACCTTTGGTTATATACTGCAGCCATTGGAACCAGGCGATACCT
TGGACCACGACGTACAACAGCTGGTGAACCTCAAGAGCATTATGGTCAAT
GAACTCGGCGCAGTGCCGCCACTGCTGGACTACTACAAGCATTTGGAGAA
GAAACCGGAGAAGAGCAAACTCTCCTTGGACCGCATATTTATGATTAATC
TAAAAAGACGACCCGAGCGGCGAGAGAAAATGGAAAGGCTGTTCGACGAG
ATCGGAATAGAGGCGGAGCACTTCCCGGCCGTTGATGGCAAAGAACTGAG
CACGGAAAGGCTGCTGGAGATGGGCGTACGATTTCTGCCCGGCTACGAGG
ATCCCTATCATCATCGGGCGATGACAATGGGCGAGATTGGCTGCTTTCTG
AGCCACTACAACATCTGGGTGATGATGGTGCGCAAGCAACTGAAGGAGGT
GCTCATTCTGGAGGACGATATACGTTTCGAGCCGTATTTCCGACAGAACG
CAGTCAGAATTCTCAACCAGGCCAGGAATGCCGCACAGTACGACCTGATT
TACTTTGGCCGCAAACGTTTGAAGGAGGAAAGCGAGCCGGCTGTGGAGAA
TGCGGATAATCTGGTGCACGCTGGCTACTCGTACTGGACACTGGGCTACG
TTATATCCCTGCAGGGTGCACTGAAACTGCTGGCCGCCAAGCCGCTGGAC
AAGCTCATACCGGTCGATGAGTTTCTGCCGCTGATGTTCGATCGTCATCC
GAACAAAACGTGGACGGAAGCCTTTCCCAAGCGTAATCTTGTTGCCTTCA
GCGCCTCGCCGCTTCTGCTGTATCCCATTTACTATACTGGTGAATCTGGT
TATATATCCGACACCGAGGACTCGCAACAAATCAGCGTGGAGACGAGCGA
GGAGGGCGAGGCCAGGCTAAAGAGCGATCGAGAGCAGGTTTTCGACCATG
AGCAGGAATTCAAGCTCAATCCGGAACTCAAGCTGGGCGAGAGCTTGTCC
AAGAGCCACCAGGAACTGTAGATTTCTACCGAACAAAAACCATGCCAAAT
TTTTGACTAGACTAAGTTAGTACTAGCCTAACAACTGCCAAATGTGCCTT
TAATCCAAATCCACCAAAAATATGAAACAACGATTGCTAGTTTAAGTTAA
TGTTTTGATTAGCCGACCTAATATTTTGTGCAATTCTTTCGAACTTTTAA
ACTCGCCAAAAATGTTCCTAAATGAAAAAAGTTTGTTATCTAAAAGATAA
CACAAGTAGTAGTAATCTATGTTATAAAGTAATATACTTTGTAACTTCAA
TTTAAACAACCAGTTTTGGTACGAAAAGCAATATATCTTTTGGAATACAC
GTACGCACCTCAAAACTGTAGATCAGTGGAATCAGTAGTTGCACAAGTTA
TTGGCCAAAAGCAAACGATAGACTAATATTTCAGCAACATGCCATTGTCG
TAGCCATTAAGTAGGTTCTAAACGTTATATAAACTCTCTGACTTTATTCC
GCTCACAAGTGATGTGCAAACAGTAAACACTTAAAATTTAAAAAAAAAAA
AAAAAA

LD07116.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31915-RA 2653 CG31915-RA 162..2602 1..2441 12205 100 Plus
CG7277-RA 1576 CG7277-RA 1512..1576 2441..2377 325 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5527617..5529780 276..2439 10820 100 Plus
chr2L 23010047 chr2L 5527269..5527547 1..279 1395 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5528519..5530684 276..2441 10830 100 Plus
2L 23513712 2L 5528171..5528449 1..279 1395 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5528519..5530684 276..2441 10830 100 Plus
2L 23513712 2L 5528171..5528449 1..279 1395 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:36:24 has no hits.

LD07116.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:37:12 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5527269..5527544 1..276 100 -> Plus
chr2L 5527618..5529780 277..2439 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:39:13 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
CG31915-RA 1..1839 83..1921 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:03:54 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
CG31915-RA 1..1839 83..1921 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:07 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
CG31915-RA 1..1839 83..1921 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:49:15 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
CG31915-RA 1..1839 83..1921 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:41 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
CG31915-RA 1..1839 83..1921 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:54:50 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
CG31915-RA 85..2509 1..2425 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:03:54 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
CG31915-RA 85..2523 1..2439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:07 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
CG31915-RA 49..2487 1..2439 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:49:15 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
CG31915-RA 85..2509 1..2425 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:41 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
CG31915-RA 49..2487 1..2439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:12 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5528171..5528446 1..276 100 -> Plus
2L 5528520..5530682 277..2439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:12 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5528171..5528446 1..276 100 -> Plus
2L 5528520..5530682 277..2439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:12 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5528171..5528446 1..276 100 -> Plus
2L 5528520..5530682 277..2439 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:07 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5528171..5528446 1..276 100 -> Plus
arm_2L 5528520..5530682 277..2439 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:55:57 Download gff for LD07116.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5528171..5528446 1..276 100 -> Plus
2L 5528520..5530682 277..2439 100   Plus

LD07116.hyp Sequence

Translation from 0 to 1920

> LD07116.hyp
RTGRFRSARLCTVTPLNPALRLIDDVEMNKQVIFGLLLACILVCISGQDE
EDYQESPTVLIALLVRNKAHILPMFLSYLEQQDYPKERIAIWLRCDHSND
DSIELLRQWLDNSGDLYHSVSYEFKPEEQSFVNGTSPYEWPASRFKHLIA
LKEEAFQYGRDIWADYVFFLDADVLLTSKDSLKVLTRLQLPIVAPMLISE
SLYSNFWCGMTEDYYYRRTDEYKEIYHVKKQGSFPVPMVHTAVLVNMNHR
AVRNLTFDRNKLVELQKSRQQEPLYDGPADDIIVFAISANSSGIPLHICN
DITFGYILQPLEPGDTLDHDVQQLVNLKSIMVNELGAVPPLLDYYKHLEK
KPEKSKLSLDRIFMINLKRRPERREKMERLFDEIGIEAEHFPAVDGKELS
TERLLEMGVRFLPGYEDPYHHRAMTMGEIGCFLSHYNIWVMMVRKQLKEV
LILEDDIRFEPYFRQNAVRILNQARNAAQYDLIYFGRKRLKEESEPAVEN
ADNLVHAGYSYWTLGYVISLQGALKLLAAKPLDKLIPVDEFLPLMFDRHP
NKTWTEAFPKRNLVAFSASPLLLYPIYYTGESGYISDTEDSQQISVETSE
EGEARLKSDREQVFDHEQEFKLNPELKLGESLSKSHQEL*

LD07116.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31915-PA 612 CG31915-PA 1..612 28..639 3208 100 Plus
Plod-PB 721 CG6199-PB 267..454 43..245 173 26.9 Plus
Plod-PA 721 CG6199-PA 267..454 43..245 173 26.9 Plus

LD07116.pep Sequence

Translation from 82 to 1920

> LD07116.pep
MNKQVIFGLLLACILVCISGQDEEDYQESPTVLIALLVRNKAHILPMFLS
YLEQQDYPKERIAIWLRCDHSNDDSIELLRQWLDNSGDLYHSVSYEFKPE
EQSFVNGTSPYEWPASRFKHLIALKEEAFQYGRDIWADYVFFLDADVLLT
SKDSLKVLTRLQLPIVAPMLISESLYSNFWCGMTEDYYYRRTDEYKEIYH
VKKQGSFPVPMVHTAVLVNMNHRAVRNLTFDRNKLVELQKSRQQEPLYDG
PADDIIVFAISANSSGIPLHICNDITFGYILQPLEPGDTLDHDVQQLVNL
KSIMVNELGAVPPLLDYYKHLEKKPEKSKLSLDRIFMINLKRRPERREKM
ERLFDEIGIEAEHFPAVDGKELSTERLLEMGVRFLPGYEDPYHHRAMTMG
EIGCFLSHYNIWVMMVRKQLKEVLILEDDIRFEPYFRQNAVRILNQARNA
AQYDLIYFGRKRLKEESEPAVENADNLVHAGYSYWTLGYVISLQGALKLL
AAKPLDKLIPVDEFLPLMFDRHPNKTWTEAFPKRNLVAFSASPLLLYPIY
YTGESGYISDTEDSQQISVETSEEGEARLKSDREQVFDHEQEFKLNPELK
LGESLSKSHQEL*

LD07116.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24561-PA 730 GF24561-PA 275..508 12..282 162 22.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31915-PA 612 CG31915-PA 1..612 1..612 3208 100 Plus
Plod-PB 721 CG6199-PB 267..454 16..218 173 26.9 Plus
Plod-PA 721 CG6199-PA 267..454 16..218 173 26.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11618-PA 744 GI11618-PA 290..522 16..282 197 24 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22837-PA 1367 GL22837-PA 913..1145 16..282 165 24.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16561-PB 626 GA16561-PB 2..626 1..612 2522 74.4 Plus
Dpse\GA19434-PA 698 GA19434-PA 244..476 16..282 164 24 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23349-PA 803 GD23349-PA 1..294 1..307 1274 78.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11296-PA 741 GJ11296-PA 291..487 17..233 211 28.3 Plus