Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD07116.complete Sequence
2456 bp assembled on 2007-12-12
GenBank Submission: BT031322
> LD07116.complete
ACGAACCGGACGCTTCCGCTCCGCCAGATTGTGTACTGTGACCCCTTTGA
ACCCGGCGTTGCGTTTAATCGATGACGTGGAGATGAACAAACAAGTTATA
TTCGGCCTGCTCCTCGCTTGCATTTTGGTGTGCATTTCAGGACAGGATGA
GGAGGATTACCAGGAGTCGCCAACGGTACTGATTGCCCTGCTGGTGCGGA
ACAAAGCCCACATACTGCCCATGTTCCTCAGCTACCTGGAGCAGCAGGAC
TATCCAAAGGAAAGAATAGCAATTTGGTTGCGCTGTGATCACAGCAACGA
TGACAGCATAGAGCTATTGCGGCAGTGGCTGGACAACTCGGGGGATCTTT
ATCACAGCGTAAGCTACGAATTTAAGCCGGAGGAGCAGAGCTTTGTCAAC
GGGACTTCACCGTACGAGTGGCCCGCATCGCGTTTCAAGCACCTAATCGC
CCTGAAAGAGGAGGCCTTTCAGTATGGTCGCGATATTTGGGCTGACTACG
TGTTTTTCCTGGACGCCGATGTCTTGCTAACTTCAAAAGATTCGCTAAAA
GTCCTCACCCGACTCCAATTACCAATTGTGGCTCCCATGCTGATCTCGGA
GAGCTTATACTCGAATTTCTGGTGTGGCATGACGGAGGACTACTACTACA
GACGCACCGATGAGTACAAGGAAATCTATCATGTGAAAAAGCAAGGCAGC
TTCCCAGTGCCAATGGTCCACACAGCCGTTTTGGTGAACATGAACCATCG
AGCGGTTAGGAATCTCACCTTCGATAGGAACAAGCTGGTGGAATTGCAGA
AATCCCGACAGCAAGAGCCACTGTACGATGGACCAGCCGATGACATCATT
GTGTTCGCCATATCGGCCAACAGTTCAGGCATTCCCTTGCACATTTGCAA
CGACATAACCTTTGGTTATATACTGCAGCCATTGGAACCAGGCGATACCT
TGGACCACGACGTACAACAGCTGGTGAACCTCAAGAGCATTATGGTCAAT
GAACTCGGCGCAGTGCCGCCACTGCTGGACTACTACAAGCATTTGGAGAA
GAAACCGGAGAAGAGCAAACTCTCCTTGGACCGCATATTTATGATTAATC
TAAAAAGACGACCCGAGCGGCGAGAGAAAATGGAAAGGCTGTTCGACGAG
ATCGGAATAGAGGCGGAGCACTTCCCGGCCGTTGATGGCAAAGAACTGAG
CACGGAAAGGCTGCTGGAGATGGGCGTACGATTTCTGCCCGGCTACGAGG
ATCCCTATCATCATCGGGCGATGACAATGGGCGAGATTGGCTGCTTTCTG
AGCCACTACAACATCTGGGTGATGATGGTGCGCAAGCAACTGAAGGAGGT
GCTCATTCTGGAGGACGATATACGTTTCGAGCCGTATTTCCGACAGAACG
CAGTCAGAATTCTCAACCAGGCCAGGAATGCCGCACAGTACGACCTGATT
TACTTTGGCCGCAAACGTTTGAAGGAGGAAAGCGAGCCGGCTGTGGAGAA
TGCGGATAATCTGGTGCACGCTGGCTACTCGTACTGGACACTGGGCTACG
TTATATCCCTGCAGGGTGCACTGAAACTGCTGGCCGCCAAGCCGCTGGAC
AAGCTCATACCGGTCGATGAGTTTCTGCCGCTGATGTTCGATCGTCATCC
GAACAAAACGTGGACGGAAGCCTTTCCCAAGCGTAATCTTGTTGCCTTCA
GCGCCTCGCCGCTTCTGCTGTATCCCATTTACTATACTGGTGAATCTGGT
TATATATCCGACACCGAGGACTCGCAACAAATCAGCGTGGAGACGAGCGA
GGAGGGCGAGGCCAGGCTAAAGAGCGATCGAGAGCAGGTTTTCGACCATG
AGCAGGAATTCAAGCTCAATCCGGAACTCAAGCTGGGCGAGAGCTTGTCC
AAGAGCCACCAGGAACTGTAGATTTCTACCGAACAAAAACCATGCCAAAT
TTTTGACTAGACTAAGTTAGTACTAGCCTAACAACTGCCAAATGTGCCTT
TAATCCAAATCCACCAAAAATATGAAACAACGATTGCTAGTTTAAGTTAA
TGTTTTGATTAGCCGACCTAATATTTTGTGCAATTCTTTCGAACTTTTAA
ACTCGCCAAAAATGTTCCTAAATGAAAAAAGTTTGTTATCTAAAAGATAA
CACAAGTAGTAGTAATCTATGTTATAAAGTAATATACTTTGTAACTTCAA
TTTAAACAACCAGTTTTGGTACGAAAAGCAATATATCTTTTGGAATACAC
GTACGCACCTCAAAACTGTAGATCAGTGGAATCAGTAGTTGCACAAGTTA
TTGGCCAAAAGCAAACGATAGACTAATATTTCAGCAACATGCCATTGTCG
TAGCCATTAAGTAGGTTCTAAACGTTATATAAACTCTCTGACTTTATTCC
GCTCACAAGTGATGTGCAAACAGTAAACACTTAAAATTTAAAAAAAAAAA
AAAAAA
LD07116.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 16:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31915-RA | 2653 | CG31915-RA | 162..2602 | 1..2441 | 12205 | 100 | Plus |
CG7277-RA | 1576 | CG7277-RA | 1512..1576 | 2441..2377 | 325 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 5527617..5529780 | 276..2439 | 10820 | 100 | Plus |
chr2L | 23010047 | chr2L | 5527269..5527547 | 1..279 | 1395 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5528519..5530684 | 276..2441 | 10830 | 100 | Plus |
2L | 23513712 | 2L | 5528171..5528449 | 1..279 | 1395 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5528519..5530684 | 276..2441 | 10830 | 100 | Plus |
2L | 23513712 | 2L | 5528171..5528449 | 1..279 | 1395 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 18:36:24 has no hits.
LD07116.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:37:12 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 5527269..5527544 | 1..276 | 100 | -> | Plus |
chr2L | 5527618..5529780 | 277..2439 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:39:13 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31915-RA | 1..1839 | 83..1921 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:03:54 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31915-RA | 1..1839 | 83..1921 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:07 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31915-RA | 1..1839 | 83..1921 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:49:15 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31915-RA | 1..1839 | 83..1921 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:41 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31915-RA | 1..1839 | 83..1921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:54:50 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31915-RA | 85..2509 | 1..2425 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:03:54 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31915-RA | 85..2523 | 1..2439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:07 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31915-RA | 49..2487 | 1..2439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:49:15 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31915-RA | 85..2509 | 1..2425 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:41 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31915-RA | 49..2487 | 1..2439 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:12 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5528171..5528446 | 1..276 | 100 | -> | Plus |
2L | 5528520..5530682 | 277..2439 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:12 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5528171..5528446 | 1..276 | 100 | -> | Plus |
2L | 5528520..5530682 | 277..2439 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:12 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5528171..5528446 | 1..276 | 100 | -> | Plus |
2L | 5528520..5530682 | 277..2439 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:07 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5528171..5528446 | 1..276 | 100 | -> | Plus |
arm_2L | 5528520..5530682 | 277..2439 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:55:57 Download gff for
LD07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5528171..5528446 | 1..276 | 100 | -> | Plus |
2L | 5528520..5530682 | 277..2439 | 100 | | Plus |
LD07116.hyp Sequence
Translation from 0 to 1920
> LD07116.hyp
RTGRFRSARLCTVTPLNPALRLIDDVEMNKQVIFGLLLACILVCISGQDE
EDYQESPTVLIALLVRNKAHILPMFLSYLEQQDYPKERIAIWLRCDHSND
DSIELLRQWLDNSGDLYHSVSYEFKPEEQSFVNGTSPYEWPASRFKHLIA
LKEEAFQYGRDIWADYVFFLDADVLLTSKDSLKVLTRLQLPIVAPMLISE
SLYSNFWCGMTEDYYYRRTDEYKEIYHVKKQGSFPVPMVHTAVLVNMNHR
AVRNLTFDRNKLVELQKSRQQEPLYDGPADDIIVFAISANSSGIPLHICN
DITFGYILQPLEPGDTLDHDVQQLVNLKSIMVNELGAVPPLLDYYKHLEK
KPEKSKLSLDRIFMINLKRRPERREKMERLFDEIGIEAEHFPAVDGKELS
TERLLEMGVRFLPGYEDPYHHRAMTMGEIGCFLSHYNIWVMMVRKQLKEV
LILEDDIRFEPYFRQNAVRILNQARNAAQYDLIYFGRKRLKEESEPAVEN
ADNLVHAGYSYWTLGYVISLQGALKLLAAKPLDKLIPVDEFLPLMFDRHP
NKTWTEAFPKRNLVAFSASPLLLYPIYYTGESGYISDTEDSQQISVETSE
EGEARLKSDREQVFDHEQEFKLNPELKLGESLSKSHQEL*
LD07116.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31915-PA | 612 | CG31915-PA | 1..612 | 28..639 | 3208 | 100 | Plus |
Plod-PB | 721 | CG6199-PB | 267..454 | 43..245 | 173 | 26.9 | Plus |
Plod-PA | 721 | CG6199-PA | 267..454 | 43..245 | 173 | 26.9 | Plus |
LD07116.pep Sequence
Translation from 82 to 1920
> LD07116.pep
MNKQVIFGLLLACILVCISGQDEEDYQESPTVLIALLVRNKAHILPMFLS
YLEQQDYPKERIAIWLRCDHSNDDSIELLRQWLDNSGDLYHSVSYEFKPE
EQSFVNGTSPYEWPASRFKHLIALKEEAFQYGRDIWADYVFFLDADVLLT
SKDSLKVLTRLQLPIVAPMLISESLYSNFWCGMTEDYYYRRTDEYKEIYH
VKKQGSFPVPMVHTAVLVNMNHRAVRNLTFDRNKLVELQKSRQQEPLYDG
PADDIIVFAISANSSGIPLHICNDITFGYILQPLEPGDTLDHDVQQLVNL
KSIMVNELGAVPPLLDYYKHLEKKPEKSKLSLDRIFMINLKRRPERREKM
ERLFDEIGIEAEHFPAVDGKELSTERLLEMGVRFLPGYEDPYHHRAMTMG
EIGCFLSHYNIWVMMVRKQLKEVLILEDDIRFEPYFRQNAVRILNQARNA
AQYDLIYFGRKRLKEESEPAVENADNLVHAGYSYWTLGYVISLQGALKLL
AAKPLDKLIPVDEFLPLMFDRHPNKTWTEAFPKRNLVAFSASPLLLYPIY
YTGESGYISDTEDSQQISVETSEEGEARLKSDREQVFDHEQEFKLNPELK
LGESLSKSHQEL*
LD07116.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF24561-PA | 730 | GF24561-PA | 275..508 | 12..282 | 162 | 22.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31915-PA | 612 | CG31915-PA | 1..612 | 1..612 | 3208 | 100 | Plus |
Plod-PB | 721 | CG6199-PB | 267..454 | 16..218 | 173 | 26.9 | Plus |
Plod-PA | 721 | CG6199-PA | 267..454 | 16..218 | 173 | 26.9 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI11618-PA | 744 | GI11618-PA | 290..522 | 16..282 | 197 | 24 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL22837-PA | 1367 | GL22837-PA | 913..1145 | 16..282 | 165 | 24.7 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA16561-PB | 626 | GA16561-PB | 2..626 | 1..612 | 2522 | 74.4 | Plus |
Dpse\GA19434-PA | 698 | GA19434-PA | 244..476 | 16..282 | 164 | 24 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD23349-PA | 803 | GD23349-PA | 1..294 | 1..307 | 1274 | 78.2 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ11296-PA | 741 | GJ11296-PA | 291..487 | 17..233 | 211 | 28.3 | Plus |