BDGP Sequence Production Resources |
Search the DGRC for LD07162
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 71 |
Well: | 62 |
Vector: | pBS SK- |
Associated Gene/Transcript | vig-RA |
Protein status: | LD07162.pep: gold |
Preliminary Size: | 1780 |
Sequenced Size: | 1805 |
Gene | Date | Evidence |
---|---|---|
CG4170 | 2001-01-01 | Release 2 assignment |
CG4170 | 2002-06-06 | Blastp of sequenced clone |
CG4170 | 2003-01-01 | Sim4 clustering to Release 3 |
vig | 2008-04-29 | Release 5.5 accounting |
vig | 2008-08-15 | Release 5.9 accounting |
vig | 2008-12-18 | 5.12 accounting |
1805 bp (1805 high quality bases) assembled on 2002-06-06
GenBank Submission: AY119578
> LD07162.complete AGAGCAGCAGCCACCAAACAGCCAGCAGAAAAAGCAAAAAGGCAATTAAA GCGGCAGCCAGCTAGCAACGAAAAACACACCCACCCACAAAATCATGGAC AGCGCCGGTAAAAATCGTTATGAACTTTTGTTCATGGACGACGATGTCAG CGATCCATTAGATAATCTTGTGGCGCCGACGGCCGCTGCTGCCGCAGCAG CAGCTGGCAAGAAGAAGCAACCGTCAGCTGCTGCTGCAGCGGCCACCAAA ACGACCGCCAACAAGGTGGCCAACAGCAATAACAAGGCGAACGCAGGATC CAATATTGGTGGACCCAATGCCAAGAAACCAAATCAGGCCGAAAAGGAGA ACAAGCCCAATAATGCGTTAAACAAAACCGATGGCAAGAAGTTCACTCCA TCGGCCGACAACAAACAGCAGCAGTTCAATAATAACGCCAGCAGCAATTA CAAACAACAGGGTGCTCCACGGCAAGGAGGTGGCGCCAACCGAACACGTG AATTTGGTAGCGGTCAAGGACAGGGTCAAGGACAAGGTGGCCAGCAGCAG CGCAGCGTAAACTTCCGTCAACAGAATGGCAATGCCGAGACTCGTGAGCA GCGCAACAATCGCCGCAATGTCCGCGAAAACGTCGGAGCACCCGATGGCC AGCAGTCGCGACCTTACCGCGGACCAGGTGGAGGCCCAGGTGCTGGCGGA GATCGTCCCCAGCGTCAGAACCGCAACTACGATGGCCAGAACAGGAAGCG CGAGTTCGACCGCCAGTCGGGTTCCGATAGAACTGGTGTGAAGTCAATTG ACAAACGCGATGGAGCTGGCTCCCACAACTGGGGATCGGTCAAGGAGGCT ATTGATGATGTGAACAAGAACGAAAGCGAAACCAATGTGACCAATGCCGA GGGCGGCGCCAAGGCCGATGAATCTGGCACTGAACCACAAAACGAGCAGG CTACCGCCGAGGAGGAAGCCAAAGAGCTGACCTTGGACGAGTGGAAGGCA CAGCAAGGACAGCGCATCAAGCCAACCTTTAATATCCGCAAGGCTGGAGA AGGTGAGGACACCACACAATGGAAGAAAATGGTCGTCCTAACTAGCAACA AGAAGAAGGAGAACGACAGCGAAGAGGAGCTCGAGTACGACCCTGCCCTT TATCCACAGCGTGTGGGCAGGCAACAGCGCGTCCTGGACATTCAGTTCAA TTTCAACGATGGTCGTCGTGGCGGACCTGGCGGTTTCGGTGGACGCGGTG GCCGTGGAGGCCCCAGACCCGGTGGATTTGGAGGCGGACCACGCAGCGAG GGTGGCAACCGCGATGGCGGCAATCGTGAGGGCGGCCGAGATAATCGTGA GGGTGGAAACCGTGGCCCACGGGATGGCCAGCAGCATAATAACGAGGGCG GCGGTTCATCCGCTCAAAATCAAAGGCCACCCATCGATCGTCGCGGTCCG GGAAACAACCAGAACAACAATCAGAACAGCGGTCCAGGGCCGAATAAGCG TTTTGAGCGACAACAGAACACCGCTCCCAAGGTCAACGATGAGCGTCAGT TTCCCACTCTGGCTTAAATCGATCGTTTTGGGCAGGAGTAGGTTCCTCAA ATTGCAGTTTTGGTTACTGACGATGGTGAATGAAAGCAGCAAGTTACCAA AATGAAAACTTATAAATTACGTATATCACAGACAACAAACTTTTTAAAAA CTAAAAGAAAAATGGGGAAATTACGAAAACAATTGTAGCCGCCATTATAA GCCAAAAGCAACAAAAATACCAACCAACAAGCTAAGTAAAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vig.e | 3239 | vig.e | 157..1952 | 1..1796 | 8980 | 100 | Plus |
vig.m | 2819 | vig.m | 157..1952 | 1..1796 | 8980 | 100 | Plus |
vig.b | 1840 | vig.b | 69..1833 | 32..1796 | 8825 | 100 | Plus |
vig.b | 1840 | vig.b | 1..32 | 1..32 | 160 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 15065723..15066478 | 788..33 | 3780 | 100 | Minus |
chr2L | 23010047 | chr2L | 15063009..15063744 | 1787..1051 | 3605 | 99.6 | Minus |
chr2L | 23010047 | chr2L | 15063981..15064251 | 1055..785 | 1355 | 100 | Minus |
chrYHet | 347003 | chrYHet | 306750..306863 | 1099..1212 | 240 | 80.7 | Plus |
chr3R | 27901430 | chr3R | 20948040..20948153 | 1099..1212 | 240 | 80.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 15066934..15067689 | 788..33 | 3780 | 100 | Minus |
2L | 23513712 | 2L | 15064205..15064950 | 1796..1051 | 3730 | 100 | Minus |
2L | 23513712 | 2L | 15065187..15065457 | 1055..785 | 1355 | 100 | Minus |
Y | 3667352 | Y | 3023805..3023918 | 1099..1212 | 240 | 80.7 | Plus |
3R | 32079331 | 3R | 25124888..25125001 | 1099..1212 | 240 | 80.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 15066934..15067689 | 788..33 | 3780 | 100 | Minus |
2L | 23513712 | 2L | 15064205..15064950 | 1796..1051 | 3730 | 100 | Minus |
2L | 23513712 | 2L | 15065187..15065457 | 1055..785 | 1355 | 100 | Minus |
3R | 31820162 | 3R | 24865719..24865832 | 1099..1212 | 240 | 80.7 | Plus |
Y | 3410481 | Y | 2870275..2870388 | 1099..1212 | 240 | 80.7 | Plus |
3R | 31820162 | 3R | 24864907..24864948 | 746..787 | 180 | 95.2 | Plus |
Y | 3410481 | Y | 2869466..2869507 | 746..787 | 165 | 92.8 | Plus |
2L | 23513712 | 2L | 15067916..15067947 | 32..1 | 160 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 15063009..15063742 | 1053..1787 | 99 | <- | Minus |
chr2L | 15063984..15064250 | 786..1052 | 100 | <- | Minus |
chr2L | 15065726..15066478 | 33..785 | 100 | <- | Minus |
chr2L | 15066705..15066736 | 1..32 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig-RA | 1..1473 | 95..1567 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig-RA | 1..1473 | 95..1567 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig-RC | 1..1473 | 95..1567 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig-RA | 1..1473 | 95..1567 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig-RC | 1..1473 | 95..1567 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig-RA | 110..1896 | 1..1787 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig-RA | 110..1896 | 1..1787 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig-RA | 132..1918 | 1..1787 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig-RA | 110..1896 | 1..1787 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vig-RA | 132..1918 | 1..1787 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 15064214..15064948 | 1053..1787 | 100 | <- | Minus |
2L | 15065190..15065456 | 786..1052 | 100 | <- | Minus |
2L | 15066937..15067689 | 33..785 | 100 | <- | Minus |
2L | 15067916..15067947 | 1..32 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 15064214..15064948 | 1053..1787 | 100 | <- | Minus |
2L | 15065190..15065456 | 786..1052 | 100 | <- | Minus |
2L | 15066937..15067689 | 33..785 | 100 | <- | Minus |
2L | 15067916..15067947 | 1..32 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 15064214..15064948 | 1053..1787 | 100 | <- | Minus |
2L | 15065190..15065456 | 786..1052 | 100 | <- | Minus |
2L | 15066937..15067689 | 33..785 | 100 | <- | Minus |
2L | 15067916..15067947 | 1..32 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 15064214..15064948 | 1053..1787 | 100 | <- | Minus |
arm_2L | 15065190..15065456 | 786..1052 | 100 | <- | Minus |
arm_2L | 15066937..15067689 | 33..785 | 100 | <- | Minus |
arm_2L | 15067916..15067947 | 1..32 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 15064214..15064948 | 1053..1787 | 100 | <- | Minus |
2L | 15065190..15065456 | 786..1052 | 100 | <- | Minus |
2L | 15066937..15067689 | 33..785 | 100 | <- | Minus |
2L | 15067916..15067947 | 1..32 | 100 | Minus |
Translation from 94 to 1566
> LD07162.pep MDSAGKNRYELLFMDDDVSDPLDNLVAPTAAAAAAAAGKKKQPSAAAAAA TKTTANKVANSNNKANAGSNIGGPNAKKPNQAEKENKPNNALNKTDGKKF TPSADNKQQQFNNNASSNYKQQGAPRQGGGANRTREFGSGQGQGQGQGGQ QQRSVNFRQQNGNAETREQRNNRRNVRENVGAPDGQQSRPYRGPGGGPGA GGDRPQRQNRNYDGQNRKREFDRQSGSDRTGVKSIDKRDGAGSHNWGSVK EAIDDVNKNESETNVTNAEGGAKADESGTEPQNEQATAEEEAKELTLDEW KAQQGQRIKPTFNIRKAGEGEDTTQWKKMVVLTSNKKKENDSEEELEYDP ALYPQRVGRQQRVLDIQFNFNDGRRGGPGGFGGRGGRGGPRPGGFGGGPR SEGGNRDGGNREGGRDNREGGNRGPRDGQQHNNEGGGSSAQNQRPPIDRR GPGNNQNNNQNSGPGPNKRFERQQNTAPKVNDERQFPTLA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15560-PA | 536 | GF15560-PA | 40..536 | 1..490 | 1163 | 70.9 | Plus |
Dana\GF17890-PA | 337 | GF17890-PA | 142..337 | 218..490 | 184 | 32.9 | Plus |
Dana\GF21047-PA | 384 | GF21047-PA | 184..334 | 207..371 | 175 | 34.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24224-PA | 496 | GG24224-PA | 1..496 | 1..490 | 1728 | 90.4 | Plus |
Dere\GG11363-PA | 428 | GG11363-PA | 121..428 | 201..490 | 529 | 46.1 | Plus |
Dere\GG19413-PA | 291 | GG19413-PA | 56..180 | 179..307 | 184 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10817-PA | 497 | GH10817-PA | 1..381 | 1..372 | 727 | 58.9 | Plus |
Dgri\GH18047-PA | 345 | GH18047-PA | 82..294 | 170..390 | 435 | 47.4 | Plus |
Dgri\GH24647-PA | 312 | GH24647-PA | 141..277 | 218..376 | 264 | 40.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vig-PB | 490 | CG4170-PB | 1..490 | 1..490 | 2614 | 100 | Plus |
vig-PA | 490 | CG4170-PA | 1..490 | 1..490 | 2614 | 100 | Plus |
vig-PC | 490 | CG4170-PC | 1..490 | 1..490 | 2614 | 100 | Plus |
vig-PD | 490 | CG4170-PD | 1..490 | 1..490 | 2614 | 100 | Plus |
vig2-PD | 412 | CG11844-PD | 1..411 | 1..489 | 716 | 41.7 | Plus |
vig2-PA | 412 | CG11844-PA | 1..411 | 1..489 | 716 | 41.7 | Plus |
vig2-PC | 412 | CG11844-PC | 1..411 | 1..489 | 716 | 41.7 | Plus |
vig2-PB | 443 | CG11844-PB | 32..442 | 1..489 | 716 | 41.7 | Plus |
FDY-PE | 317 | CG41503-PE | 1..317 | 14..409 | 574 | 40.2 | Plus |
FDY-PD | 317 | CG41503-PD | 1..317 | 14..409 | 574 | 40.2 | Plus |
PPYR1-PA | 309 | CG15031-PA | 91..269 | 207..389 | 192 | 32.3 | Plus |
tral-PI | 647 | CG10686-PI | 183..622 | 27..446 | 174 | 23.3 | Plus |
tral-PH | 657 | CG10686-PH | 183..632 | 27..446 | 173 | 23 | Plus |
resilin-PA | 620 | CG15920-PA | 124..535 | 72..463 | 172 | 24.2 | Plus |
tral-PG | 643 | CG10686-PG | 156..618 | 20..446 | 172 | 23.3 | Plus |
tral-PC | 656 | CG10686-PC | 183..631 | 27..446 | 172 | 23.1 | Plus |
tral-PD | 646 | CG10686-PD | 183..621 | 27..446 | 166 | 23 | Plus |
caz-PC | 384 | CG3606-PC | 5..291 | 193..483 | 158 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17329-PA | 476 | GI17329-PA | 1..375 | 1..380 | 882 | 61.6 | Plus |
Dmoj\GI23826-PA | 335 | GI23826-PA | 100..293 | 198..397 | 514 | 53.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25726-PA | 534 | GL25726-PA | 1..517 | 1..490 | 1066 | 63.7 | Plus |
Dper\GL21903-PA | 333 | GL21903-PA | 99..317 | 196..414 | 449 | 45.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18005-PA | 518 | GA18005-PA | 1..518 | 1..490 | 1072 | 64 | Plus |
Dpse\GA11231-PA | 333 | GA11231-PA | 99..299 | 196..397 | 471 | 48.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14534-PA | 489 | GM14534-PA | 1..489 | 1..490 | 2435 | 98.4 | Plus |
Dsec\GM17805-PA | 198 | GM17805-PA | 1..198 | 295..490 | 349 | 46.5 | Plus |
Dsec\GM17804-PA | 196 | GM17804-PA | 120..185 | 201..256 | 172 | 60.6 | Plus |
Dsec\GM22055-PA | 316 | GM22055-PA | 98..201 | 219..321 | 168 | 36.4 | Plus |
Dsec\GM15190-PA | 262 | GM15190-PA | 88..201 | 204..321 | 165 | 36 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21970-PA | 520 | GD21970-PA | 260..520 | 230..490 | 1360 | 98.5 | Plus |
Dsim\GD21176-PA | 406 | GD21176-PA | 1..406 | 1..490 | 518 | 38 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15963-PA | 482 | GJ15963-PA | 1..368 | 1..372 | 844 | 61.3 | Plus |
Dvir\GJ23598-PA | 303 | GJ23598-PA | 67..259 | 197..391 | 487 | 50.5 | Plus |
Dvir\GJ15695-PA | 432 | GJ15695-PA | 209..406 | 218..387 | 335 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18065-PA | 503 | GK18065-PA | 1..387 | 1..372 | 841 | 58.8 | Plus |
Dwil\GK13399-PA | 376 | GK13399-PA | 1..309 | 1..377 | 573 | 41.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19416-PA | 486 | GE19416-PA | 1..486 | 1..490 | 1765 | 92.9 | Plus |
Dyak\GE23560-PA | 421 | GE23560-PA | 121..421 | 201..490 | 547 | 48.8 | Plus |
Dyak\GE16059-PA | 316 | GE16059-PA | 99..188 | 214..307 | 174 | 44.8 | Plus |
Translation from 94 to 1566
> LD07162.hyp MDSAGKNRYELLFMDDDVSDPLDNLVAPTAAAAAAAAGKKKQPSAAAAAA TKTTANKVANSNNKANAGSNIGGPNAKKPNQAEKENKPNNALNKTDGKKF TPSADNKQQQFNNNASSNYKQQGAPRQGGGANRTREFGSGQGQGQGQGGQ QQRSVNFRQQNGNAETREQRNNRRNVRENVGAPDGQQSRPYRGPGGGPGA GGDRPQRQNRNYDGQNRKREFDRQSGSDRTGVKSIDKRDGAGSHNWGSVK EAIDDVNKNESETNVTNAEGGAKADESGTEPQNEQATAEEEAKELTLDEW KAQQGQRIKPTFNIRKAGEGEDTTQWKKMVVLTSNKKKENDSEEELEYDP ALYPQRVGRQQRVLDIQFNFNDGRRGGPGGFGGRGGRGGPRPGGFGGGPR SEGGNRDGGNREGGRDNREGGNRGPRDGQQHNNEGGGSSAQNQRPPIDRR GPGNNQNNNQNSGPGPNKRFERQQNTAPKVNDERQFPTLA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vig-PB | 490 | CG4170-PB | 1..490 | 1..490 | 2614 | 100 | Plus |
vig-PA | 490 | CG4170-PA | 1..490 | 1..490 | 2614 | 100 | Plus |
vig-PC | 490 | CG4170-PC | 1..490 | 1..490 | 2614 | 100 | Plus |
vig-PD | 490 | CG4170-PD | 1..490 | 1..490 | 2614 | 100 | Plus |
vig2-PD | 412 | CG11844-PD | 1..411 | 1..489 | 716 | 41.7 | Plus |