Clone LD07162 Report

Search the DGRC for LD07162

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:71
Well:62
Vector:pBS SK-
Associated Gene/Transcriptvig-RA
Protein status:LD07162.pep: gold
Preliminary Size:1780
Sequenced Size:1805

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4170 2001-01-01 Release 2 assignment
CG4170 2002-06-06 Blastp of sequenced clone
CG4170 2003-01-01 Sim4 clustering to Release 3
vig 2008-04-29 Release 5.5 accounting
vig 2008-08-15 Release 5.9 accounting
vig 2008-12-18 5.12 accounting

Clone Sequence Records

LD07162.complete Sequence

1805 bp (1805 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119578

> LD07162.complete
AGAGCAGCAGCCACCAAACAGCCAGCAGAAAAAGCAAAAAGGCAATTAAA
GCGGCAGCCAGCTAGCAACGAAAAACACACCCACCCACAAAATCATGGAC
AGCGCCGGTAAAAATCGTTATGAACTTTTGTTCATGGACGACGATGTCAG
CGATCCATTAGATAATCTTGTGGCGCCGACGGCCGCTGCTGCCGCAGCAG
CAGCTGGCAAGAAGAAGCAACCGTCAGCTGCTGCTGCAGCGGCCACCAAA
ACGACCGCCAACAAGGTGGCCAACAGCAATAACAAGGCGAACGCAGGATC
CAATATTGGTGGACCCAATGCCAAGAAACCAAATCAGGCCGAAAAGGAGA
ACAAGCCCAATAATGCGTTAAACAAAACCGATGGCAAGAAGTTCACTCCA
TCGGCCGACAACAAACAGCAGCAGTTCAATAATAACGCCAGCAGCAATTA
CAAACAACAGGGTGCTCCACGGCAAGGAGGTGGCGCCAACCGAACACGTG
AATTTGGTAGCGGTCAAGGACAGGGTCAAGGACAAGGTGGCCAGCAGCAG
CGCAGCGTAAACTTCCGTCAACAGAATGGCAATGCCGAGACTCGTGAGCA
GCGCAACAATCGCCGCAATGTCCGCGAAAACGTCGGAGCACCCGATGGCC
AGCAGTCGCGACCTTACCGCGGACCAGGTGGAGGCCCAGGTGCTGGCGGA
GATCGTCCCCAGCGTCAGAACCGCAACTACGATGGCCAGAACAGGAAGCG
CGAGTTCGACCGCCAGTCGGGTTCCGATAGAACTGGTGTGAAGTCAATTG
ACAAACGCGATGGAGCTGGCTCCCACAACTGGGGATCGGTCAAGGAGGCT
ATTGATGATGTGAACAAGAACGAAAGCGAAACCAATGTGACCAATGCCGA
GGGCGGCGCCAAGGCCGATGAATCTGGCACTGAACCACAAAACGAGCAGG
CTACCGCCGAGGAGGAAGCCAAAGAGCTGACCTTGGACGAGTGGAAGGCA
CAGCAAGGACAGCGCATCAAGCCAACCTTTAATATCCGCAAGGCTGGAGA
AGGTGAGGACACCACACAATGGAAGAAAATGGTCGTCCTAACTAGCAACA
AGAAGAAGGAGAACGACAGCGAAGAGGAGCTCGAGTACGACCCTGCCCTT
TATCCACAGCGTGTGGGCAGGCAACAGCGCGTCCTGGACATTCAGTTCAA
TTTCAACGATGGTCGTCGTGGCGGACCTGGCGGTTTCGGTGGACGCGGTG
GCCGTGGAGGCCCCAGACCCGGTGGATTTGGAGGCGGACCACGCAGCGAG
GGTGGCAACCGCGATGGCGGCAATCGTGAGGGCGGCCGAGATAATCGTGA
GGGTGGAAACCGTGGCCCACGGGATGGCCAGCAGCATAATAACGAGGGCG
GCGGTTCATCCGCTCAAAATCAAAGGCCACCCATCGATCGTCGCGGTCCG
GGAAACAACCAGAACAACAATCAGAACAGCGGTCCAGGGCCGAATAAGCG
TTTTGAGCGACAACAGAACACCGCTCCCAAGGTCAACGATGAGCGTCAGT
TTCCCACTCTGGCTTAAATCGATCGTTTTGGGCAGGAGTAGGTTCCTCAA
ATTGCAGTTTTGGTTACTGACGATGGTGAATGAAAGCAGCAAGTTACCAA
AATGAAAACTTATAAATTACGTATATCACAGACAACAAACTTTTTAAAAA
CTAAAAGAAAAATGGGGAAATTACGAAAACAATTGTAGCCGCCATTATAA
GCCAAAAGCAACAAAAATACCAACCAACAAGCTAAGTAAAAAAAAAAAAA
AAAAA

LD07162.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
vig.e 3239 vig.e 157..1952 1..1796 8980 100 Plus
vig.m 2819 vig.m 157..1952 1..1796 8980 100 Plus
vig.b 1840 vig.b 69..1833 32..1796 8825 100 Plus
vig.b 1840 vig.b 1..32 1..32 160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 15065723..15066478 788..33 3780 100 Minus
chr2L 23010047 chr2L 15063009..15063744 1787..1051 3605 99.6 Minus
chr2L 23010047 chr2L 15063981..15064251 1055..785 1355 100 Minus
chrYHet 347003 chrYHet 306750..306863 1099..1212 240 80.7 Plus
chr3R 27901430 chr3R 20948040..20948153 1099..1212 240 80.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 18:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
CR41503-RA 1115 CR41503-RA 556..644 746..834 280 87.6 Plus
CR41503-RA 1115 CR41503-RA 894..1007 1099..1212 240 80.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15066934..15067689 788..33 3780 100 Minus
2L 23513712 2L 15064205..15064950 1796..1051 3730 100 Minus
2L 23513712 2L 15065187..15065457 1055..785 1355 100 Minus
Y 3667352 Y 3023805..3023918 1099..1212 240 80.7 Plus
3R 32079331 3R 25124888..25125001 1099..1212 240 80.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15066934..15067689 788..33 3780 100 Minus
2L 23513712 2L 15064205..15064950 1796..1051 3730 100 Minus
2L 23513712 2L 15065187..15065457 1055..785 1355 100 Minus
3R 31820162 3R 24865719..24865832 1099..1212 240 80.7 Plus
Y 3410481 Y 2870275..2870388 1099..1212 240 80.7 Plus
3R 31820162 3R 24864907..24864948 746..787 180 95.2 Plus
Y 3410481 Y 2869466..2869507 746..787 165 92.8 Plus
2L 23513712 2L 15067916..15067947 32..1 160 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:45:43 has no hits.

LD07162.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:46:31 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 15063009..15063742 1053..1787 99 <- Minus
chr2L 15063984..15064250 786..1052 100 <- Minus
chr2L 15065726..15066478 33..785 100 <- Minus
chr2L 15066705..15066736 1..32 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:39:15 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RA 1..1473 95..1567 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:31:05 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RA 1..1473 95..1567 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:53:09 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RC 1..1473 95..1567 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:21:11 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RA 1..1473 95..1567 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:47:49 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RC 1..1473 95..1567 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:29 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:01:02 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RA 110..1896 1..1787 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:31:05 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RA 110..1896 1..1787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:53:09 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RA 132..1918 1..1787 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:21:11 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RA 110..1896 1..1787 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:47:49 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RA 132..1918 1..1787 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:46:31 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15064214..15064948 1053..1787 100 <- Minus
2L 15065190..15065456 786..1052 100 <- Minus
2L 15066937..15067689 33..785 100 <- Minus
2L 15067916..15067947 1..32 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:46:31 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15064214..15064948 1053..1787 100 <- Minus
2L 15065190..15065456 786..1052 100 <- Minus
2L 15066937..15067689 33..785 100 <- Minus
2L 15067916..15067947 1..32 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:46:31 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15064214..15064948 1053..1787 100 <- Minus
2L 15065190..15065456 786..1052 100 <- Minus
2L 15066937..15067689 33..785 100 <- Minus
2L 15067916..15067947 1..32 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:53:09 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15064214..15064948 1053..1787 100 <- Minus
arm_2L 15065190..15065456 786..1052 100 <- Minus
arm_2L 15066937..15067689 33..785 100 <- Minus
arm_2L 15067916..15067947 1..32 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:55:00 Download gff for LD07162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15064214..15064948 1053..1787 100 <- Minus
2L 15065190..15065456 786..1052 100 <- Minus
2L 15066937..15067689 33..785 100 <- Minus
2L 15067916..15067947 1..32 100   Minus

LD07162.pep Sequence

Translation from 94 to 1566

> LD07162.pep
MDSAGKNRYELLFMDDDVSDPLDNLVAPTAAAAAAAAGKKKQPSAAAAAA
TKTTANKVANSNNKANAGSNIGGPNAKKPNQAEKENKPNNALNKTDGKKF
TPSADNKQQQFNNNASSNYKQQGAPRQGGGANRTREFGSGQGQGQGQGGQ
QQRSVNFRQQNGNAETREQRNNRRNVRENVGAPDGQQSRPYRGPGGGPGA
GGDRPQRQNRNYDGQNRKREFDRQSGSDRTGVKSIDKRDGAGSHNWGSVK
EAIDDVNKNESETNVTNAEGGAKADESGTEPQNEQATAEEEAKELTLDEW
KAQQGQRIKPTFNIRKAGEGEDTTQWKKMVVLTSNKKKENDSEEELEYDP
ALYPQRVGRQQRVLDIQFNFNDGRRGGPGGFGGRGGRGGPRPGGFGGGPR
SEGGNRDGGNREGGRDNREGGNRGPRDGQQHNNEGGGSSAQNQRPPIDRR
GPGNNQNNNQNSGPGPNKRFERQQNTAPKVNDERQFPTLA*

LD07162.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15560-PA 536 GF15560-PA 40..536 1..490 1163 70.9 Plus
Dana\GF17890-PA 337 GF17890-PA 142..337 218..490 184 32.9 Plus
Dana\GF21047-PA 384 GF21047-PA 184..334 207..371 175 34.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24224-PA 496 GG24224-PA 1..496 1..490 1728 90.4 Plus
Dere\GG11363-PA 428 GG11363-PA 121..428 201..490 529 46.1 Plus
Dere\GG19413-PA 291 GG19413-PA 56..180 179..307 184 37.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10817-PA 497 GH10817-PA 1..381 1..372 727 58.9 Plus
Dgri\GH18047-PA 345 GH18047-PA 82..294 170..390 435 47.4 Plus
Dgri\GH24647-PA 312 GH24647-PA 141..277 218..376 264 40.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
vig-PB 490 CG4170-PB 1..490 1..490 2614 100 Plus
vig-PA 490 CG4170-PA 1..490 1..490 2614 100 Plus
vig-PC 490 CG4170-PC 1..490 1..490 2614 100 Plus
vig-PD 490 CG4170-PD 1..490 1..490 2614 100 Plus
vig2-PD 412 CG11844-PD 1..411 1..489 716 41.7 Plus
vig2-PA 412 CG11844-PA 1..411 1..489 716 41.7 Plus
vig2-PC 412 CG11844-PC 1..411 1..489 716 41.7 Plus
vig2-PB 443 CG11844-PB 32..442 1..489 716 41.7 Plus
FDY-PE 317 CG41503-PE 1..317 14..409 574 40.2 Plus
FDY-PD 317 CG41503-PD 1..317 14..409 574 40.2 Plus
PPYR1-PA 309 CG15031-PA 91..269 207..389 192 32.3 Plus
tral-PI 647 CG10686-PI 183..622 27..446 174 23.3 Plus
tral-PH 657 CG10686-PH 183..632 27..446 173 23 Plus
resilin-PA 620 CG15920-PA 124..535 72..463 172 24.2 Plus
tral-PG 643 CG10686-PG 156..618 20..446 172 23.3 Plus
tral-PC 656 CG10686-PC 183..631 27..446 172 23.1 Plus
tral-PD 646 CG10686-PD 183..621 27..446 166 23 Plus
caz-PC 384 CG3606-PC 5..291 193..483 158 26.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17329-PA 476 GI17329-PA 1..375 1..380 882 61.6 Plus
Dmoj\GI23826-PA 335 GI23826-PA 100..293 198..397 514 53.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25726-PA 534 GL25726-PA 1..517 1..490 1066 63.7 Plus
Dper\GL21903-PA 333 GL21903-PA 99..317 196..414 449 45.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18005-PA 518 GA18005-PA 1..518 1..490 1072 64 Plus
Dpse\GA11231-PA 333 GA11231-PA 99..299 196..397 471 48.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14534-PA 489 GM14534-PA 1..489 1..490 2435 98.4 Plus
Dsec\GM17805-PA 198 GM17805-PA 1..198 295..490 349 46.5 Plus
Dsec\GM17804-PA 196 GM17804-PA 120..185 201..256 172 60.6 Plus
Dsec\GM22055-PA 316 GM22055-PA 98..201 219..321 168 36.4 Plus
Dsec\GM15190-PA 262 GM15190-PA 88..201 204..321 165 36 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21970-PA 520 GD21970-PA 260..520 230..490 1360 98.5 Plus
Dsim\GD21176-PA 406 GD21176-PA 1..406 1..490 518 38 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15963-PA 482 GJ15963-PA 1..368 1..372 844 61.3 Plus
Dvir\GJ23598-PA 303 GJ23598-PA 67..259 197..391 487 50.5 Plus
Dvir\GJ15695-PA 432 GJ15695-PA 209..406 218..387 335 38.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18065-PA 503 GK18065-PA 1..387 1..372 841 58.8 Plus
Dwil\GK13399-PA 376 GK13399-PA 1..309 1..377 573 41.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19416-PA 486 GE19416-PA 1..486 1..490 1765 92.9 Plus
Dyak\GE23560-PA 421 GE23560-PA 121..421 201..490 547 48.8 Plus
Dyak\GE16059-PA 316 GE16059-PA 99..188 214..307 174 44.8 Plus

LD07162.hyp Sequence

Translation from 94 to 1566

> LD07162.hyp
MDSAGKNRYELLFMDDDVSDPLDNLVAPTAAAAAAAAGKKKQPSAAAAAA
TKTTANKVANSNNKANAGSNIGGPNAKKPNQAEKENKPNNALNKTDGKKF
TPSADNKQQQFNNNASSNYKQQGAPRQGGGANRTREFGSGQGQGQGQGGQ
QQRSVNFRQQNGNAETREQRNNRRNVRENVGAPDGQQSRPYRGPGGGPGA
GGDRPQRQNRNYDGQNRKREFDRQSGSDRTGVKSIDKRDGAGSHNWGSVK
EAIDDVNKNESETNVTNAEGGAKADESGTEPQNEQATAEEEAKELTLDEW
KAQQGQRIKPTFNIRKAGEGEDTTQWKKMVVLTSNKKKENDSEEELEYDP
ALYPQRVGRQQRVLDIQFNFNDGRRGGPGGFGGRGGRGGPRPGGFGGGPR
SEGGNRDGGNREGGRDNREGGNRGPRDGQQHNNEGGGSSAQNQRPPIDRR
GPGNNQNNNQNSGPGPNKRFERQQNTAPKVNDERQFPTLA*

LD07162.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
vig-PB 490 CG4170-PB 1..490 1..490 2614 100 Plus
vig-PA 490 CG4170-PA 1..490 1..490 2614 100 Plus
vig-PC 490 CG4170-PC 1..490 1..490 2614 100 Plus
vig-PD 490 CG4170-PD 1..490 1..490 2614 100 Plus
vig2-PD 412 CG11844-PD 1..411 1..489 716 41.7 Plus