Clone LD07294 Report

Search the DGRC for LD07294

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:72
Well:94
Vector:pBS SK-
Associated Gene/TranscriptTap42-RA
Protein status:LD07294.pep: gold
Sequenced Size:1342

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Tap42 2008-04-29 Release 5.5 accounting
Tap42 2008-04-29 Picked prior to 5.5
Tap42 2008-08-15 Release 5.9 accounting
Tap42 2008-12-18 5.12 accounting

Clone Sequence Records

LD07294.complete Sequence

1342 bp assembled on 2007-09-24

GenBank Submission: BT030986

> LD07294.complete
TTTCGGCGTCGGCATCTTGCACATTATTTTCGCAATATTATTTATATTAT
TGAAAATACCCATTAACTATAAACTTATATCCAAATCTTTAAATGGCTGA
GGGTAATACCGCTGGCGGAGAGGACCAAAAGCTGACGGACATCTTTCTAA
AGGGCTGGAACATATTCGACGAGCTAGAAGTTACCGAACTGCCCTTCAAT
GGCAGCGAATTTCAGAACAAAGTGAAGACTGCAATGGGCCTTTTCGAGCA
GGCCACCGTCATTGTGAACCAGGTTAGCATGTTCAGTGCCAACGAGTTGA
TCGACGAGGTGTCCACGGAATCGCTACCATTCATGCTGCTCCCTTACTTT
CTGGGCAAGCTTACCACTAAGATCAACAGCCCCAATAACACACACTCCAT
AGAGCTGGGCGAGATTTACTTCAAGGACCACCTGCAGCGTTGCCAGGAGT
ATGATCTCTGTGCAGCGCCCAAATCTCAGGTGGCTAAGGCGGATAGCCAA
GCGGAAAAAAGCGAGCAGCGCGAGCTGGTAGAGGCAGCCTTCAATAGAAA
CGACAAAATAGCCCAGTATCGCCGGATGAAGGAGATTGACGAGTATATGG
CCAGAATGCGCGATGCAGTCAAGAACAAAACGGTCGACGATGAGGATAAA
CGTGTCTTTTTCCTCAAGTATTTGGACAAGAGTATAATAGACTCCAAGCA
GGAATTAGAAACATTGGGCGTAATGAAGCAGCTGGCCCAGATGCGCCTTG
CCCGATTGGCTGGTGGCGAATCCGACAACGAAGTGGATTCGTTCCGTCCA
CCGAATCAAAATCAATCTTCTGCATCGTCCACCTCCCGCGGTCATGGTCA
CAGCCACGGACCCGGACACCACCACCATCATCAGCAGGCCGCTAAGCCAA
AGCCCTTGCAGCCCTTCATCATAACACGTAATGCCACCCAGAAGGCGGTT
TTCGGCTTGGGATACCCCAGTTTGCCCATTATGACTGTTGATGAATTCTA
CCAGCAGCGCGTCGACGAGGGCATCTTTCCTGATGAGGAGAAGGTTGCCA
AGATGAATCAGGCACAGGCCATCGCGGCCGCCCGGGATCCCAACGAAAAA
GAGGACGAGGAGAAGGCCGTTGAGGAGCTACAGGCGGAGCAGGATGATCC
CGAGTATATAGACCGCATGAGGCGCATGGATGAATACAAGGATGTGGTGC
GTCGCGGTGACGGCAACCGTCATAACCGTAGTTAAGGAACTCAAAATTTA
TGTATTTTTTTAAAACCCAATAAAATGGTATAACCGCAAGACTGGTTTTA
AGTCAGTATATTCAAAAAATAAAAAAAAAAAAAAAAAAAAAA

LD07294.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
Tap42-RA 1377 Tap42-RA 45..1366 1..1322 6610 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13366590..13367696 214..1320 5505 99.8 Plus
chr2L 23010047 chr2L 13366307..13366521 1..215 1075 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13367915..13369023 214..1322 5545 100 Plus
2L 23513712 2L 13367632..13367846 1..215 1075 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13367915..13369023 214..1322 5545 100 Plus
2L 23513712 2L 13367632..13367846 1..215 1075 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:08:27 has no hits.

LD07294.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:09:06 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13366307..13366521 1..215 100 -> Plus
chr2L 13366592..13367696 216..1320 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:39:23 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
Tap42-RA 1..1143 93..1235 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:03:56 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
Tap42-RA 1..1143 93..1235 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:09:27 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
Tap42-RA 1..1143 93..1235 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:49:16 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
Tap42-RA 1..1143 93..1235 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:57 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
Tap42-RA 1..1143 93..1235 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:54:52 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
Tap42-RA 17..1336 1..1320 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:03:56 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
Tap42-RA 17..1336 1..1320 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:27 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
Tap42-RA 16..1335 1..1320 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:49:16 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
Tap42-RA 17..1336 1..1320 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:57 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
Tap42-RA 16..1335 1..1320 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:09:06 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13367632..13367846 1..215 100 -> Plus
2L 13367917..13369021 216..1320 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:09:06 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13367632..13367846 1..215 100 -> Plus
2L 13367917..13369021 216..1320 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:09:06 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13367632..13367846 1..215 100 -> Plus
2L 13367917..13369021 216..1320 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:27 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13367632..13367846 1..215 100 -> Plus
arm_2L 13367917..13369021 216..1320 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:55:58 Download gff for LD07294.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13367632..13367846 1..215 100 -> Plus
2L 13367917..13369021 216..1320 100   Plus

LD07294.pep Sequence

Translation from 92 to 1234

> LD07294.pep
MAEGNTAGGEDQKLTDIFLKGWNIFDELEVTELPFNGSEFQNKVKTAMGL
FEQATVIVNQVSMFSANELIDEVSTESLPFMLLPYFLGKLTTKINSPNNT
HSIELGEIYFKDHLQRCQEYDLCAAPKSQVAKADSQAEKSEQRELVEAAF
NRNDKIAQYRRMKEIDEYMARMRDAVKNKTVDDEDKRVFFLKYLDKSIID
SKQELETLGVMKQLAQMRLARLAGGESDNEVDSFRPPNQNQSSASSTSRG
HGHSHGPGHHHHHQQAAKPKPLQPFIITRNATQKAVFGLGYPSLPIMTVD
EFYQQRVDEGIFPDEEKVAKMNQAQAIAAARDPNEKEDEEKAVEELQAEQ
DDPEYIDRMRRMDEYKDVVRRGDGNRHNRS*

LD07294.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23124-PA 383 GF23124-PA 15..383 11..380 1551 80.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23843-PA 379 GG23843-PA 1..379 1..380 1862 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13460-PA 373 GH13460-PA 1..373 1..380 1317 67.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Tap42-PA 380 CG31852-PA 1..380 1..380 1968 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17214-PA 375 GI17214-PA 1..375 1..380 1418 72.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26046-PA 226 GL26046-PA 1..226 146..380 792 73.6 Plus
Dper\GL26045-PA 127 GL26045-PA 1..101 1..97 398 76.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16525-PA 374 GA16525-PA 12..374 8..380 1379 74 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10432-PA 440 GM10432-PA 1..237 1..237 1230 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23892-PA 380 GD23892-PA 1..380 1..380 2019 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17970-PA 379 GJ17970-PA 12..379 9..380 1421 72.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14840-PA 379 GK14840-PA 12..379 8..380 1474 76.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18648-PA 380 GE18648-PA 1..380 1..380 1987 96.1 Plus

LD07294.hyp Sequence

Translation from 92 to 1234

> LD07294.hyp
MAEGNTAGGEDQKLTDIFLKGWNIFDELEVTELPFNGSEFQNKVKTAMGL
FEQATVIVNQVSMFSANELIDEVSTESLPFMLLPYFLGKLTTKINSPNNT
HSIELGEIYFKDHLQRCQEYDLCAAPKSQVAKADSQAEKSEQRELVEAAF
NRNDKIAQYRRMKEIDEYMARMRDAVKNKTVDDEDKRVFFLKYLDKSIID
SKQELETLGVMKQLAQMRLARLAGGESDNEVDSFRPPNQNQSSASSTSRG
HGHSHGPGHHHHHQQAAKPKPLQPFIITRNATQKAVFGLGYPSLPIMTVD
EFYQQRVDEGIFPDEEKVAKMNQAQAIAAARDPNEKEDEEKAVEELQAEQ
DDPEYIDRMRRMDEYKDVVRRGDGNRHNRS*

LD07294.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
Tap42-PA 380 CG31852-PA 1..380 1..380 1968 100 Plus