Clone LD07362 Report

Search the DGRC for LD07362

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:73
Well:62
Vector:pBS SK-
Associated Gene/TranscriptDip-C-RA
Protein status:LD07362.pep: gold
Preliminary Size:1819
Sequenced Size:1749

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5663 2001-01-01 Release 2 assignment
CG5663 2001-10-10 Blastp of sequenced clone
CG5663 2003-01-01 Sim4 clustering to Release 3
Dip-C 2008-04-29 Release 5.5 accounting
Dip-C 2008-08-15 Release 5.9 accounting
snmRNA:649 2008-08-15 Release 5.9 accounting
snmRNA:649 2008-12-18 5.12 accounting
Dip-C 2008-12-18 5.12 accounting

Clone Sequence Records

LD07362.complete Sequence

1749 bp (1749 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061085

> LD07362.complete
CTTTTGCGAAAACAGAAAACAAAAAACACTGATAAAACCCACATAATTTA
CTGCCTTTGTTAGCCCGGTTATTGGCTATTATCAGCTAATCTCACTTGCT
CGAGCACTCATTGTTGTCCAGAGCGCCAGTTAAACTTTGTCCTCCGTCGC
AACACCATGGCCGCCTTTCAGATGGGATCGGGTTACGCAGTGCCCATGAC
CCTCTTCCGGAACAACAGGGATCGTGCTGGCAAGGCCATCCTTAAGGAGC
TGCTGCCGGGCCTCAAGTTCAACGACGGCAACCTGCTGGTGCTCCTCGAG
GGCGGCAAGGACCAGAGCCTGTACAACACCGACGTGGACTACGTTTTCCG
GCAGGAGTCCTATTTCCAGTACTTGTTCGGTGTCAAGGAGCCGGGCTGCT
ACGGCATCCTAACCATTGATGTGAAAACTGGTGCACAGAAAAGTGTTCTC
TTTGTTCCTCGCTTTCCCGATGAGTACGGCACCTGGATGGGCGAACTGCT
TGGGCTGCAGGAGTTCAAGGCCATGTACGAGGTGGACGAGGTGTTTTATG
TTGACGAAATGAGTGTTTATCTGGAGGGGGCGTCGCCCAAGCTGATACTC
ACATTGAGTGGCACCAACAGCGATAGCGGGCTCACCCTTCAGCCGCCCGA
CTTTGCTGGCAAGGAGAAGTATGTGACTGACTGCAATCTGCTGTATCCAA
TTCTCTCTGAGTGCCGAGTGATCAAGTCACCCGAAGAGATCGAGGTGCTG
CGCTACGTGGCCAAGGTATCCTCGGACGCGCACATCAAGGTGATGCGGTT
TATGCGTCCCGGTAGAATGGAATTTGAGGGCGAATCCCTGTTCCTGCACC
ACGCCTACTCCGTGGGCGGCTGCCGGCATGCCTCCTACACCTGCATATGC
GGCAGCGGAACGAACTCGTCGATCTTGCACTATGGACACGCGGGCGCACC
CAACAGCAAGCCCGTCCAGGATGGTGATCTCTGCCTGTTCGATATGGGAG
CCAACTATTGTGGCTATGCGGCCGACATAACCTGCACATTCCCGGCCAAT
GGAAAGTTCACCGACGACCAGAAGTTCATCTACAATGCCGTGCTGGATGC
CCGCAATGCGGTCACAGAGTCAGCCCGTGACGGAGTCTCCTGGGTGGACA
TGCACAAGCTGGCGGGCAGGGTGTTGCTGCAGCGCCTGAAGGAGGGCGGC
ATGCTCAAGGGCGATGTGGAGGAGATGCTCGAGGCAGGTGTTTCGGGCGT
GTTCCAGCCACATGGCCTGGGCCACTTGATCGGTCTGGATGTGCACGACG
TGGGCGGCTATCTGCCCAAGGAGCCCAAGCGCCCCAGTGAACCGTGGCTG
AGCAAGCTGCGCTTTGCCCGCATCCTTAAGGCCGGCATGTATGTCACAAT
CGAACCCGGCTGCTACTTCATCAACTGGCTGATGGACCGCGCTCTGGCCG
ATCCGAACATTGCTAAATTCATTAACGCAGAGATGTTCAATCGCTTCCGG
AATTTCGGAGGTGTGCGCATCGAGGACGATGTGCTCATCACGAAGACTGG
CGTGGAGAACTTTGCGATTGTGCCGCGAACGGTGGAGGACATCGAGGCAA
CCATGACCTGTAAATATGATTCGCCGGTTTAGAGCTTTTAAACTATATTC
CACGCGTAAACATATGTAATATAATCTGTATCATAATCAAATTATGGAAT
ACCCAATAAATAAATAAGGTCTCATCAGTTGAAAAAAAAAAAAAAAAAA

LD07362.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-C-RA 1934 Dip-C-RA 200..1931 1..1732 8660 100 Plus
CG5196-RA 1937 CG5196-RA 1868..1937 1732..1663 350 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8237198..8238928 1731..1 8655 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 18:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
snmRNA:649-RA 59 CR33685-RA 1..59 94..152 295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12411808..12413539 1732..1 8660 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12152639..12154370 1732..1 8660 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:41:41 has no hits.

LD07362.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:42:46 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8237198..8238928 1..1731 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:39:29 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-C-RA 1..1476 157..1632 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:53 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-C-RA 1..1476 157..1632 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:38:35 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-C-RA 1..1476 157..1632 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:55 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-C-RA 1..1476 157..1632 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:47:53 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-C-RA 1..1476 157..1632 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 18:53:37 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
snmRNA:649-RA 1..59 94..152 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:44 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-C-RA 200..1930 1..1731 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:53 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-C-RA 200..1930 1..1731 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:35 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-C-RA 1..1731 1..1731 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:55 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-C-RA 200..1930 1..1731 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:47:53 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-C-RA 17..1747 1..1731 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:46 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12411809..12413539 1..1731 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:46 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12411809..12413539 1..1731 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:46 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12411809..12413539 1..1731 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:35 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8237531..8239261 1..1731 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:02 Download gff for LD07362.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12152640..12154370 1..1731 100   Minus

LD07362.pep Sequence

Translation from 156 to 1631

> LD07362.pep
MAAFQMGSGYAVPMTLFRNNRDRAGKAILKELLPGLKFNDGNLLVLLEGG
KDQSLYNTDVDYVFRQESYFQYLFGVKEPGCYGILTIDVKTGAQKSVLFV
PRFPDEYGTWMGELLGLQEFKAMYEVDEVFYVDEMSVYLEGASPKLILTL
SGTNSDSGLTLQPPDFAGKEKYVTDCNLLYPILSECRVIKSPEEIEVLRY
VAKVSSDAHIKVMRFMRPGRMEFEGESLFLHHAYSVGGCRHASYTCICGS
GTNSSILHYGHAGAPNSKPVQDGDLCLFDMGANYCGYAADITCTFPANGK
FTDDQKFIYNAVLDARNAVTESARDGVSWVDMHKLAGRVLLQRLKEGGML
KGDVEEMLEAGVSGVFQPHGLGHLIGLDVHDVGGYLPKEPKRPSEPWLSK
LRFARILKAGMYVTIEPGCYFINWLMDRALADPNIAKFINAEMFNRFRNF
GGVRIEDDVLITKTGVENFAIVPRTVEDIEATMTCKYDSPV*

LD07362.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17046-PA 486 GF17046-PA 1..484 1..484 2285 86.6 Plus
Dana\GF20449-PA 543 GF20449-PA 127..513 45..465 344 29.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17129-PA 491 GG17129-PA 1..491 1..491 2599 98.2 Plus
Dere\GG18008-PA 545 GG18008-PA 123..529 42..479 310 26.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17466-PA 486 GH17466-PA 1..486 1..486 2139 80 Plus
Dgri\GH12088-PA 516 GH12088-PA 96..495 35..465 311 28.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-C-PB 491 CG5663-PB 1..491 1..491 2602 100 Plus
Dip-C-PA 491 CG5663-PA 1..491 1..491 2602 100 Plus
CG9581-PA 545 CG9581-PA 124..510 45..465 304 27.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22790-PA 486 GI22790-PA 1..486 1..486 2207 81.9 Plus
Dmoj\GI11096-PA 489 GI11096-PA 82..468 45..465 346 29.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27178-PA 486 GL27178-PA 1..486 1..486 2297 85.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19042-PA 486 GA19042-PA 1..486 1..486 2292 85.2 Plus
Dpse\GA21891-PA 542 GA21891-PA 118..505 45..466 328 27.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26012-PA 491 GM26012-PA 1..491 1..491 2614 98.6 Plus
Dsec\GM22689-PA 254 GM22689-PA 34..219 247..465 199 30.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20570-PA 469 GD20570-PA 1..469 1..491 2452 94.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22793-PA 486 GJ22793-PA 1..486 1..486 2233 83.3 Plus
Dvir\GJ15780-PA 518 GJ15780-PA 111..497 45..465 324 27.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12846-PA 492 GK12846-PA 6..486 4..483 2189 82.1 Plus
Dwil\GK25597-PA 526 GK25597-PA 131..498 60..461 351 28.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24520-PA 490 GE24520-PA 1..490 1..491 2567 97.4 Plus
Dyak\GE17339-PA 545 GE17339-PA 123..510 42..465 310 27.8 Plus

LD07362.hyp Sequence

Translation from 156 to 1631

> LD07362.hyp
MAAFQMGSGYAVPMTLFRNNRDRAGKAILKELLPGLKFNDGNLLVLLEGG
KDQSLYNTDVDYVFRQESYFQYLFGVKEPGCYGILTIDVKTGAQKSVLFV
PRFPDEYGTWMGELLGLQEFKAMYEVDEVFYVDEMSVYLEGASPKLILTL
SGTNSDSGLTLQPPDFAGKEKYVTDCNLLYPILSECRVIKSPEEIEVLRY
VAKVSSDAHIKVMRFMRPGRMEFEGESLFLHHAYSVGGCRHASYTCICGS
GTNSSILHYGHAGAPNSKPVQDGDLCLFDMGANYCGYAADITCTFPANGK
FTDDQKFIYNAVLDARNAVTESARDGVSWVDMHKLAGRVLLQRLKEGGML
KGDVEEMLEAGVSGVFQPHGLGHLIGLDVHDVGGYLPKEPKRPSEPWLSK
LRFARILKAGMYVTIEPGCYFINWLMDRALADPNIAKFINAEMFNRFRNF
GGVRIEDDVLITKTGVENFAIVPRTVEDIEATMTCKYDSPV*

LD07362.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-C-PB 491 CG5663-PB 1..491 1..491 2602 100 Plus
Dip-C-PA 491 CG5663-PA 1..491 1..491 2602 100 Plus
CG9581-PA 545 CG9581-PA 124..510 45..465 304 27.4 Plus