Clone LD07457 Report

Search the DGRC for LD07457

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:74
Well:57
Vector:pBS SK-
Associated Gene/TranscriptCG10984-RA
Protein status:LD07457.pep: gold
Preliminary Size:2414
Sequenced Size:2303

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10984 2001-01-01 Release 2 assignment
CG10984 2001-11-09 Blastp of sequenced clone
CG10984 2003-01-01 Sim4 clustering to Release 3
CG10984 2008-04-29 Release 5.5 accounting
CG10984 2008-08-15 Release 5.9 accounting
CG10984 2008-12-18 5.12 accounting

Clone Sequence Records

LD07457.complete Sequence

2303 bp (2303 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069368

> LD07457.complete
TCGCACTATTCTTTTTGTAATAAATTTTGCAAGACTTTTTCAAGTCTCCG
TTTTTGTTCTATATTTTAATTTTTACCGTCTAAAACTGAACAAAAGAGTA
TGCCACCCCCAAGACCGAAGGGGATAGGATTTAATACAGGAGCTACCCAA
CCCAGATCGAACTCAAACACGCCAATGTCGGAGAGGCAGCAAATGGCTCT
GCTCATCCAAATGACAGCCAACTCGTCGACAGATTCATCCCGCACCACCT
TAAAGAAGAATGAATGCAAGAAAGGAGACGCAGAGACTGACGAGGGCAGC
CTGAATGAGAAGCAAGAGGTCCTGGACACGAAAGACAAATCTTCAGCGGA
GGAGAGCAGCAACGATGGTAAATCCAGCGATACGAATCATCAGGGAACTT
CGGCTGCCAAGCGCTGCTACTCAGACATAGAGGAGGACTACGAGGAATCT
GGCGAGGACGTAAAGAAAAAGAAGCGCAAGGATTCGGAGCATGGAAAGGA
CGTGAAGGGGGCCTCCCTGAAGCTCACATCGCGCGTGGAGAAAAGCTCCA
AGCTAGCTGCAACGAAGGGATCCCCGTCAGGAAACAAAAGCAGCGCTTCC
AATGCCGAAAAGGAGCCGGCGGAGACTAGTAAGAATGTAGATATTGAGAA
CGAAACGGAGTGCAGCGATGATTACAAGAGTAACGACAGCCTATACAACG
GAGGACTCAAAGTGCCGCCATTAAAAATTGTGATTCCGCAGCAGAACTGC
TCAATCGACACTGAGGGCAATGTGCTTCGAACTGGCAAGGTGACTGCCTC
TCGCAATGCCGCCCTGCCGTATGTGGTCAGCTCCAATAGCGATTCCATTG
ACACCGTCATAACCAATCAATCTATTAGCCCGCACGAAAGTCCACAGAAG
AGCAATAGCATTTGCTCCACAGCCCTCGATGACAAGAATATAAAGCTCTT
CAATGACGAAAAGAACCTGAGGGTCCTGCGAAGCTCTCATCGCACTGGAG
TGACCAGTGTGGAGCGCAGTTCCAATAACTCCTCCCCGCAAATGCAGAGC
AGCTCTCCATCGCCAGCGTCATCGAATCATGCCAACGATCCTGCAGATGT
GAAGCTCTCCTATAGCAACATGACATCTAGTCCGATCCCGCAGGGCCACC
AGTTTGACCAGGAGGCAATCACCAATGTTCCAAGCCCGTCGACGTCGTCG
ACATCCTCGTCCAAGGACATAAATCCCTCGAACGTGGAACTCCATCCACG
GAAGCGAAAGATTCGACCGAAAAACACCGACGACAGTTCGAAGAACTCAA
ATGCGGCGGATTCCGGTGTCAACTCCGAAGAATCTCACCCCCATGACCAT
CCCTTCACCAATGGCTTCCAGATGTTCTTGAGCATCCGTCGTCAGATCGA
AAAGAAGTGGAAGAGCTTGTATCCGGTGAAGCCAAGACCTCCGCAAGGTT
ACAACGAGTATCTGCTGACAAAGAAATCCTACTTATTAAGACGCAATGCG
ACGATCTCAGTTCCGGATATTCCACGCACTGTTCCGCAGGCCATGGAGAG
GATCTATCAGGATCAGGAGAAGGCCAGGCGAGATCTGATCGAAGCGCACA
CCGTGGAGCGGGAGAAACTATGCATGAACGTTGAGCAGGAGATAATACGC
GTTCACTCGAAGGCGGCCAGGAGCATATCTGGACAGCCGGCGCCCTATTC
CGTTTGCACGTATTTGAAGGACGACGAGGTCTACAACATGATCACACCGG
AGCAGGATGAAAAGGAAAAGAGTGCTCGTTGCCGCTTTAATGGACGTTTG
CTCCTCAGCTGGCTGCAAGATGTTGATGACAAGTGGGAGAAAATTAAGGA
GTCCATGGTGTTGCGGCATCATAACGAGGCGGAAAGTCTGCACGCCGTGC
AGGTGATGGATTGGAATATATTTGCAAAACGAAATAGGCTATGTGACAAC
CCGATTGAAGTTAATTTGGAGCACGTTCCGATCGTTTCAGTTGGTGACGA
CTTTGACACATTGCCAACATAACTGACGCATTGAAATTAATAAATTTTTA
CAAGATTATAAACACAGGAATGTGTTTCTTCGAAAGATTTGTGAACTAGA
GATACTTTCAAAGCCCATTTTATTTAACTTAACATTTACGTGAAAAATCG
ATTTGTTTTTAATGTGCACTTAAGTTGTCAAAAATATTTCTTGCATAATT
AACCATGTCCTGTAAATAAAGTAGGTATGAAATTTGATACATAACAATAG
ATATATAAAATAATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

LD07457.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10984-RA 2365 CG10984-RA 54..2321 1..2268 11340 100 Plus
CG10984-RC 2254 CG10984-RC 83..2254 96..2267 10860 100 Plus
CG10984-RB 2321 CG10984-RB 287..2321 233..2267 10175 100 Plus
CG10984-RB 2321 CG10984-RB 1..232 1..232 1160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12741679..12743298 230..1849 8100 100 Plus
chr3L 24539361 chr3L 12743356..12743777 1846..2267 2110 100 Plus
chr3L 24539361 chr3L 12740883..12741114 1..232 1160 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12751304..12752923 230..1849 8100 100 Plus
3L 28110227 3L 12752981..12753403 1846..2268 2115 100 Plus
3L 28110227 3L 12750508..12750739 1..232 1160 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12744404..12746023 230..1849 8100 100 Plus
3L 28103327 3L 12746081..12746503 1846..2268 2115 100 Plus
3L 28103327 3L 12743608..12743839 1..232 1160 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:47:16 has no hits.

LD07457.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:48:26 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12740883..12741114 1..232 100 -> Plus
chr3L 12741682..12743297 233..1848 100 -> Plus
chr3L 12743359..12743777 1849..2267 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:39:36 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
CG10984-RA 1..1923 100..2022 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:18 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
CG10984-RA 1..1923 100..2022 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:40:28 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
CG10984-RC 1..1923 100..2022 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:56 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
CG10984-RA 1..1923 100..2022 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:15:52 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
CG10984-RC 1..1923 100..2022 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:08:14 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
CG10984-RA 1..2267 1..2267 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:18 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
CG10984-RA 1..2267 1..2267 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:28 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
CG10984-RA 1..2267 1..2267 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:56 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
CG10984-RA 1..2267 1..2267 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:15:52 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
CG10984-RA 1..2267 1..2267 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:26 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12750508..12750739 1..232 100 -> Plus
3L 12751307..12752922 233..1848 100 -> Plus
3L 12752984..12753402 1849..2267 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:26 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12750508..12750739 1..232 100 -> Plus
3L 12751307..12752922 233..1848 100 -> Plus
3L 12752984..12753402 1849..2267 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:26 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12750508..12750739 1..232 100 -> Plus
3L 12751307..12752922 233..1848 100 -> Plus
3L 12752984..12753402 1849..2267 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:28 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12743608..12743839 1..232 100 -> Plus
arm_3L 12744407..12746022 233..1848 100 -> Plus
arm_3L 12746084..12746502 1849..2267 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:17 Download gff for LD07457.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12743608..12743839 1..232 100 -> Plus
3L 12744407..12746022 233..1848 100 -> Plus
3L 12746084..12746502 1849..2267 100   Plus

LD07457.pep Sequence

Translation from 99 to 2021

> LD07457.pep
MPPPRPKGIGFNTGATQPRSNSNTPMSERQQMALLIQMTANSSTDSSRTT
LKKNECKKGDAETDEGSLNEKQEVLDTKDKSSAEESSNDGKSSDTNHQGT
SAAKRCYSDIEEDYEESGEDVKKKKRKDSEHGKDVKGASLKLTSRVEKSS
KLAATKGSPSGNKSSASNAEKEPAETSKNVDIENETECSDDYKSNDSLYN
GGLKVPPLKIVIPQQNCSIDTEGNVLRTGKVTASRNAALPYVVSSNSDSI
DTVITNQSISPHESPQKSNSICSTALDDKNIKLFNDEKNLRVLRSSHRTG
VTSVERSSNNSSPQMQSSSPSPASSNHANDPADVKLSYSNMTSSPIPQGH
QFDQEAITNVPSPSTSSTSSSKDINPSNVELHPRKRKIRPKNTDDSSKNS
NAADSGVNSEESHPHDHPFTNGFQMFLSIRRQIEKKWKSLYPVKPRPPQG
YNEYLLTKKSYLLRRNATISVPDIPRTVPQAMERIYQDQEKARRDLIEAH
TVEREKLCMNVEQEIIRVHSKAARSISGQPAPYSVCTYLKDDEVYNMITP
EQDEKEKSARCRFNGRLLLSWLQDVDDKWEKIKESMVLRHHNEAESLHAV
QVMDWNIFAKRNRLCDNPIEVNLEHVPIVSVGDDFDTLPT*

LD07457.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23568-PA 606 GF23568-PA 1..606 26..640 2690 86.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15594-PA 615 GG15594-PA 1..615 26..640 3205 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14722-PA 654 GH14722-PA 1..653 1..639 2168 72.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10984-PD 640 CG10984-PD 1..640 1..640 3316 100 Plus
CG10984-PA 640 CG10984-PA 1..640 1..640 3316 100 Plus
CG10984-PC 640 CG10984-PC 1..640 1..640 3316 100 Plus
CG10984-PB 658 CG10984-PB 1..658 1..640 3280 97.1 Plus
Muc68D-PB 1514 CG6004-PB 786..1159 15..416 177 23.3 Plus
Mur89F-PC 2158 CG4090-PC 852..1202 7..377 173 23.4 Plus
Mur89F-PB 2159 CG4090-PB 852..1202 7..377 173 23.4 Plus
Muc68D-PB 1514 CG6004-PB 292..640 12..412 159 19.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12269-PA 642 GI12269-PA 1..641 1..639 2242 73.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25208-PA 646 GL25208-PA 1..645 1..639 2477 80.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10687-PA 646 GA10687-PA 1..645 1..639 2477 80.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25369-PA 615 GM25369-PA 1..615 26..640 3240 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14401-PA 633 GD14401-PA 1..633 26..640 3184 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11499-PA 641 GJ11499-PA 1..640 1..639 2267 74.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18826-PA 671 GK18826-PA 1..671 1..640 2202 72.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21921-PA 615 GE21921-PA 1..615 26..640 3245 98.9 Plus

LD07457.hyp Sequence

Translation from 99 to 2021

> LD07457.hyp
MPPPRPKGIGFNTGATQPRSNSNTPMSERQQMALLIQMTANSSTDSSRTT
LKKNECKKGDAETDEGSLNEKQEVLDTKDKSSAEESSNDGKSSDTNHQGT
SAAKRCYSDIEEDYEESGEDVKKKKRKDSEHGKDVKGASLKLTSRVEKSS
KLAATKGSPSGNKSSASNAEKEPAETSKNVDIENETECSDDYKSNDSLYN
GGLKVPPLKIVIPQQNCSIDTEGNVLRTGKVTASRNAALPYVVSSNSDSI
DTVITNQSISPHESPQKSNSICSTALDDKNIKLFNDEKNLRVLRSSHRTG
VTSVERSSNNSSPQMQSSSPSPASSNHANDPADVKLSYSNMTSSPIPQGH
QFDQEAITNVPSPSTSSTSSSKDINPSNVELHPRKRKIRPKNTDDSSKNS
NAADSGVNSEESHPHDHPFTNGFQMFLSIRRQIEKKWKSLYPVKPRPPQG
YNEYLLTKKSYLLRRNATISVPDIPRTVPQAMERIYQDQEKARRDLIEAH
TVEREKLCMNVEQEIIRVHSKAARSISGQPAPYSVCTYLKDDEVYNMITP
EQDEKEKSARCRFNGRLLLSWLQDVDDKWEKIKESMVLRHHNEAESLHAV
QVMDWNIFAKRNRLCDNPIEVNLEHVPIVSVGDDFDTLPT*

LD07457.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10984-PD 640 CG10984-PD 1..640 1..640 3316 100 Plus
CG10984-PA 640 CG10984-PA 1..640 1..640 3316 100 Plus
CG10984-PC 640 CG10984-PC 1..640 1..640 3316 100 Plus
CG10984-PB 658 CG10984-PB 1..658 1..640 3280 97.1 Plus
Muc68D-PB 1514 CG6004-PB 786..1159 15..416 177 23.3 Plus