Clone LD07624 Report

Search the DGRC for LD07624

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:76
Well:24
Vector:pBS SK-
Associated Gene/TranscriptCG10927-RA
Protein status:LD07624.pep: gold
Preliminary Size:1441
Sequenced Size:1255

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10927 2001-01-01 Release 2 assignment
CG10927 2001-11-09 Blastp of sequenced clone
CG10927 2008-04-29 Release 5.5 accounting
CG10927 2008-08-15 Release 5.9 accounting
CG10927 2008-12-18 5.12 accounting

Clone Sequence Records

LD07624.complete Sequence

1255 bp (1255 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069369

> LD07624.complete
ATCGATTCCAATTGGCATTCTTCTAATTGAAGAATTAAGTAAATAATGGA
TATATCCGCGCCACCAAACAAACGTGCTCGAAAATCACCCAATCTGGATG
AAGACATAACTGGGATCCGGGCCATCCTCTCCGATGAGTTCGACGAGGAT
ATTGCGCTCATCAAGGCGCACAGTTGCGAGTTGGAGACGAAACAGCAGCT
CCAGGCGGTCATCCAGGAGCTCTCACAGAAATTGCCCCACTTTCAACACC
TAAAGCGCGTCCAGGATCGCAGCGTGCTCATATGTCCCAGCTCAGAGATC
GGAGTGTCTCAAAGCCTGGAACAACACCTTGAACAGTTTGCCTTTTCGGA
GCACGTGCTCCGTGCTTTGTGCCAGGGAGTCCGGGTGGTGGAGGTGCCGG
AACGGATGCCCCGACTGCGGGTGCAGTACGAGAAGACCCTTAAGCACTGG
CCCTGCAAGTTTCACCCTAATCACTACTCGGAGTCACTGAGGAATGGCAG
CAACTTTAGCTCCGCACAACGCACATTTCACAAAAGGATCGGGCAATTGC
TTGTGAGGCTCTCGCGGGATGTCAATGCCAATCGTCCGGTGGGCATCTGC
GTGGATCCGCGACAACCCAGCATTGTGTCCATTGCTGGAACTGGTGAAGT
TTGTAGGCCGCACGAGCACTGCTGCATGATGCTCGTCGATTTTGTGGCTC
GCAGTCAAGAAGGAGGCGCCACAAAAACGGAGGTTACATTCACCGAAGAT
TTCAAGAAGGATACCACTCTGCGGGGTATTCCTAAAGCCTACTACGATTA
CCTGATGAACAATGAAGACTACAAAGACCTGACATTCGGAGCGGAAAAGT
CGAGAGAATGCAAAGAAGTGGACGCAGTTCAAGGAGCAGATAACCTGGCC
AAATTCGGACCCTATCTGTGCACCGGCTACGATATCTATCTGCTGCAGGA
ACCCTGCCTTATGTGCTCCATGGCCCTGGTACATAGCAGGGCGAAAAGAG
TATTTTTCGTTAAGAACTCTGAAAACGGAGCTCTAGCCACGAGATTCCAA
CTGCATTCGGTGCGGGAACTCAACCATCACTACGAAGTGTTCCAGTTCAC
AACCAAGGAGGATGAAGACTTGACGTAACGTTTAACAAACCTTGGTTTTA
ATAAAGGATTTATAGGATATCTTCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA

LD07624.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10927-RA 1174 CG10927-RA 1..1174 1..1174 5870 100 Plus
mRpS28-RA 767 mRpS28-RA 650..767 1174..1057 590 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14500201..14501374 1..1174 5870 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18613082..18614255 1..1174 5870 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18614281..18615454 1..1174 5870 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:14:46 has no hits.

LD07624.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:15:36 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14500201..14501374 1..1174 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:39:51 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG10927-RA 1..1083 46..1128 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:21 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG10927-RA 1..1083 46..1128 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:11:14 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG10927-RA 1..1083 46..1128 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:58 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG10927-RA 1..1083 46..1128 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:28 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG10927-RA 1..1083 46..1128 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:08:16 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG10927-RA 1..1173 1..1173 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:21 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG10927-RA 1..1173 1..1173 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:11:14 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG10927-RA 1..1166 9..1174 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:58 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG10927-RA 1..1173 1..1173 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:28 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG10927-RA 1..1166 9..1174 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:36 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18613082..18614255 1..1174 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:36 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18613082..18614255 1..1174 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:36 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18613082..18614255 1..1174 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:11:14 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14500587..14501760 1..1174 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:20 Download gff for LD07624.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18614281..18615454 1..1174 100   Plus

LD07624.pep Sequence

Translation from 45 to 1127

> LD07624.pep
MDISAPPNKRARKSPNLDEDITGIRAILSDEFDEDIALIKAHSCELETKQ
QLQAVIQELSQKLPHFQHLKRVQDRSVLICPSSEIGVSQSLEQHLEQFAF
SEHVLRALCQGVRVVEVPERMPRLRVQYEKTLKHWPCKFHPNHYSESLRN
GSNFSSAQRTFHKRIGQLLVRLSRDVNANRPVGICVDPRQPSIVSIAGTG
EVCRPHEHCCMMLVDFVARSQEGGATKTEVTFTEDFKKDTTLRGIPKAYY
DYLMNNEDYKDLTFGAEKSRECKEVDAVQGADNLAKFGPYLCTGYDIYLL
QEPCLMCSMALVHSRAKRVFFVKNSENGALATRFQLHSVRELNHHYEVFQ
FTTKEDEDLT*

LD07624.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11973-PA 361 GF11973-PA 1..361 1..360 1488 76 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21908-PA 360 GG21908-PA 1..360 1..360 1835 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20299-PA 356 GH20299-PA 1..355 1..353 1128 60.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10927-PA 360 CG10927-PA 1..360 1..360 1896 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19969-PA 358 GI19969-PA 12..357 6..352 1094 58.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17026-PA 369 GL17026-PA 6..369 4..360 1389 70.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10648-PA 369 GA10648-PA 6..369 4..360 1373 69.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21898-PA 360 GM21898-PA 1..360 1..360 1860 95.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11395-PA 360 GD11395-PA 1..360 1..360 1884 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21218-PA 358 GJ21218-PA 8..358 2..353 1183 62.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15805-PA 352 GK15805-PA 8..350 4..356 1183 63.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11982-PA 360 GE11982-PA 1..360 1..360 1842 93.6 Plus

LD07624.hyp Sequence

Translation from 45 to 1127

> LD07624.hyp
MDISAPPNKRARKSPNLDEDITGIRAILSDEFDEDIALIKAHSCELETKQ
QLQAVIQELSQKLPHFQHLKRVQDRSVLICPSSEIGVSQSLEQHLEQFAF
SEHVLRALCQGVRVVEVPERMPRLRVQYEKTLKHWPCKFHPNHYSESLRN
GSNFSSAQRTFHKRIGQLLVRLSRDVNANRPVGICVDPRQPSIVSIAGTG
EVCRPHEHCCMMLVDFVARSQEGGATKTEVTFTEDFKKDTTLRGIPKAYY
DYLMNNEDYKDLTFGAEKSRECKEVDAVQGADNLAKFGPYLCTGYDIYLL
QEPCLMCSMALVHSRAKRVFFVKNSENGALATRFQLHSVRELNHHYEVFQ
FTTKEDEDLT*

LD07624.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10927-PA 360 CG10927-PA 1..360 1..360 1896 100 Plus