Clone LD07633 Report

Search the DGRC for LD07633

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:76
Well:33
Vector:pBS SK-
Associated Gene/TranscriptHaspin-RA
Protein status:LD07633.pep: gold
Preliminary Size:2063
Sequenced Size:1864

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17397 2002-01-01 Sim4 clustering to Release 2
CG40080 2002-05-18 Blastp of sequenced clone
CG40080 2003-01-01 Sim4 clustering to Release 3
Haspin 2008-04-29 Release 5.5 accounting
Haspin 2008-08-15 Release 5.9 accounting
Haspin 2008-12-18 5.12 accounting

Clone Sequence Records

LD07633.complete Sequence

1864 bp (1864 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118897

> LD07633.complete
TTTTACATTATCGATTGCGGCTGTTATCGAACCATCAATCGTAATTCTTT
AAAAATTGAAAATACATAGAGCATTTAATTTAATGCTCAGCATTAGCAAA
ACAAAAATGGATTTTTTAGAGGAAGGTAGATGGAAGGATCCGTTTGATGA
ACTTTTGGACTCCAGAACGAAACTAAGTAAAATGAACATAGTAAAACAAA
ATGTACGAGTAACCTATAACATTGACTCTAGTGTTGAAAATAGCAGCTAT
ATAGAAATAAAAGAACCAAATCACAAAAACGAACCTTTAACTCTTGAAGA
TTGCTCTATAAAAGTGTATTGCCCCAGTGATTCTATATCAACTCCTTGCG
ATAAACGATTAGGAGGCACAACAGGATTATTTGAAACCGACCTCTCTCCA
ATTACTCGCTTAAAACTTGAAGGTGTGGAAGACAGTAGAGACAAATGCGC
TGATACTAATGAGGCAGATTTATATGTAAATGTTGAAATTCTTTTTCAAA
ACATAAATTCCAGCCCTAAAAAATGTTCTAATTTTGGGAAAAAACGATTG
AGTAATTTAAATAAGATGGTTACTGCTGTACACCCTTCGATTTCATTAAA
TCCGGGAAAATGGAGAAAATCGCTAAACAATTTTATCAGATCAAAAATAA
CCGAAACAAATTTCACGAAAAAGGTAGAACGTCGAAGCTCAATATGCCAG
GATCGAAAATCATTAGTTTTGAAAGGCGAACATAAATTTGAGAATAAATA
TGAAGAAGATGTTCTTAAATATTGCCATCAGTGTACACCACTTCCGTTTA
ATACTGCATACGAACAACATAAATTATTGAATACTAAGAAGATTGGCGAA
GGGGCTTATGGAGAAGTATTTCGTTGTTCGAGAAATCAAGAAGTACTGAA
AGACCACATCTCTGATATTGTATTAAAGATTATACCTTTGGAGGGTTCCA
CTGTAATTAATGGAGAAAAGCAAAAAACATTCAGTCAAATTTTACCAGAA
ATAATTATAACTAAAAAAATGTGCAGCCTTCGAACAAGTAAAACTAATTC
TACGAATGGATTTGTGAGCATACAAAAGGTATCACTAGTTAAAGGAAGGT
ATCCACCACATTTTATAAAGCTTTGGGAAAAGTATGACAACGAAAAGGGA
TCTGAAAATGACCATCCGGAACTTTTTGGAGACAATCAACTTTTTGCAGT
CCTAGAACTGAAGTTTGCCGGAAGTGACATGGCAAATTTTAAATTTTTAA
ATTCCGAACAATCATATTACGCTTTACAACAGATTATTCTAGCGCTTGCT
GTTGGTGAAGAAGAGTATCAATTTGAGCACAGGGACCTTCATTTGGGAAA
CATATTAATTGAATACACCAATAAGAAGCACATAGTTTGTACATTCAAAA
GCAGTAATTTAACTTTGCTTTCAAAAGGAGTGAACGTTACTATTATTGAC
TACACACTTTCAAGAGTTACAATTAATGACTGCTGCTATTTTAATGATCT
CTCAAGAGATGAGGAACTTTTCCAGGCAACAGGAGATTATCAATACGATG
TCTATCGAATGATGCGGAATGAGTTAAAGAACAACTGGTCATCGTTTTCA
CCCAAAACAAATATCATATGGCTATCATATGTTATCGTTAAGGTACTGGA
TAGCGTGAAATACAAAAGCATCAATACGAAAGTTCACAGGATGTACATTG
ATAAAATAAAGGAATTGAAAAACATTATAATGACATTTGAAAGTGCTTCT
CATTGCGCAAATTATCTGTTTAATTTAAATTAAGATGCATGTACTGATTG
AAAAGATTTCGAAATATATATAAAAGTGAACTTAAAAAAATTCAAAAAAA
AAAAAAAAAAAAAA

LD07633.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
Haspin-RA 2400 Haspin-RA 351..2197 1..1847 9235 100 Plus
Haspin.f 2529 Haspin.f 682..2528 1..1847 9235 100 Plus
Haspin.c 1797 Haspin.c 182..1797 228..1843 8065 99.9 Plus
Haspin.c 1797 Haspin.c 10..185 1..176 880 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2RHet 3288813 chr2RHet 3199624..3200536 169..1081 4565 100 Plus
chr2RHet 3288813 chr2RHet 3215317..3215615 1281..1579 1495 100 Plus
chr2RHet 3288813 chr2RHet 3234390..3234659 1574..1843 1335 99.6 Plus
chr2RHet 3288813 chr2RHet 3215055..3215261 1076..1282 1035 100 Plus
chr2RHet 3288813 chr2RHet 3199402..3199570 1..169 845 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4014305..4015217 169..1081 4565 100 Plus
2R 25286936 2R 4030000..4030298 1281..1579 1495 100 Plus
2R 25286936 2R 4049073..4049346 1574..1847 1355 99.6 Plus
2R 25286936 2R 4072689..4072962 1574..1847 1355 99.6 Plus
2R 25286936 2R 4029738..4029944 1076..1282 1035 100 Plus
2R 25286936 2R 4014083..4014251 1..169 845 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 4015504..4016416 169..1081 4565 100 Plus
2R 25260384 2R 4031199..4031497 1281..1579 1495 100 Plus
2R 25260384 2R 4073888..4074161 1574..1847 1355 99.6 Plus
2R 25260384 2R 4050272..4050545 1574..1847 1355 99.6 Plus
2R 25260384 2R 4030937..4031143 1076..1282 1035 100 Plus
2R 25260384 2R 4015282..4015450 1..169 845 100 Plus
Blast to na_te.dros performed 2019-03-16 16:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6798..6985 1658..1842 167 58.9 Plus
Stalker 7256 Stalker STALKER 7256bp 1360..1424 679..616 115 66.2 Minus
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1030..1086 521..465 114 66.7 Minus

LD07633.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:32:30 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
chr2RHet 3215058..3215261 1079..1282 100 -> Plus
chr2RHet 3199402..3199569 1..168 100 -> Plus
chr2RHet 3199624..3200533 169..1078 100 -> Plus
chr2RHet 3215319..3215614 1283..1578 100 -> Plus
chr2RHet 3234395..3234659 1579..1843 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:29:35 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
Haspin-RA 1..1701 83..1783 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:47:14 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
Haspin-RA 1..1701 83..1783 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:16:10 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
Haspin-RA 1..1701 83..1783 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:39:34 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
Haspin-RA 1..1701 83..1783 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:32:07 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
Haspin-RA 1..1701 83..1783 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:29:35 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
Haspin-RA 1..1843 1..1843 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:47:14 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
Haspin-RA 1..1843 1..1843 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:16:10 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
Haspin-RA 1..1815 29..1843 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:39:34 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
Haspin-RA 1..1843 1..1843 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:32:07 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
Haspin-RA 1..1815 29..1843 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:30 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4014083..4014250 1..168 100 -> Plus
2R 4014305..4015214 169..1078 100 -> Plus
2R 4029741..4029944 1079..1282 100 -> Plus
2R 4030002..4030297 1283..1578 100 -> Plus
2R 4049078..4049342 1579..1843 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:30 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4014083..4014250 1..168 100 -> Plus
2R 4014305..4015214 169..1078 100 -> Plus
2R 4029741..4029944 1079..1282 100 -> Plus
2R 4030002..4030297 1283..1578 100 -> Plus
2R 4049078..4049342 1579..1843 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:30 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4014083..4014250 1..168 100 -> Plus
2R 4014305..4015214 169..1078 100 -> Plus
2R 4029741..4029944 1079..1282 100 -> Plus
2R 4030002..4030297 1283..1578 100 -> Plus
2R 4049078..4049342 1579..1843 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:16:10 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
2RHet 3199348..3199515 1..168 100 -> Plus
2RHet 3215006..3215209 1079..1282 100 -> Plus
2RHet 3199570..3200479 169..1078 100 -> Plus
2RHet 3215267..3215562 1283..1578 100 -> Plus
2RHet 3234343..3234607 1579..1843 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:11:56 Download gff for LD07633.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4015504..4016413 169..1078 100 -> Plus
2R 4030940..4031143 1079..1282 100 -> Plus
2R 4031201..4031496 1283..1578 100 -> Plus
2R 4050277..4050541 1579..1843 100   Plus
2R 4015282..4015449 1..168 100 -> Plus

LD07633.pep Sequence

Translation from 82 to 1782

> LD07633.pep
MLSISKTKMDFLEEGRWKDPFDELLDSRTKLSKMNIVKQNVRVTYNIDSS
VENSSYIEIKEPNHKNEPLTLEDCSIKVYCPSDSISTPCDKRLGGTTGLF
ETDLSPITRLKLEGVEDSRDKCADTNEADLYVNVEILFQNINSSPKKCSN
FGKKRLSNLNKMVTAVHPSISLNPGKWRKSLNNFIRSKITETNFTKKVER
RSSICQDRKSLVLKGEHKFENKYEEDVLKYCHQCTPLPFNTAYEQHKLLN
TKKIGEGAYGEVFRCSRNQEVLKDHISDIVLKIIPLEGSTVINGEKQKTF
SQILPEIIITKKMCSLRTSKTNSTNGFVSIQKVSLVKGRYPPHFIKLWEK
YDNEKGSENDHPELFGDNQLFAVLELKFAGSDMANFKFLNSEQSYYALQQ
IILALAVGEEEYQFEHRDLHLGNILIEYTNKKHIVCTFKSSNLTLLSKGV
NVTIIDYTLSRVTINDCCYFNDLSRDEELFQATGDYQYDVYRMMRNELKN
NWSSFSPKTNIIWLSYVIVKVLDSVKYKSINTKVHRMYIDKIKELKNIIM
TFESASHCANYLFNLN*

LD07633.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16653-PA 535 GF16653-PA 20..534 30..565 1207 47 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13564-PA 548 GH13564-PA 141..547 166..562 1197 54.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
Haspin-PA 566 CG40080-PA 1..566 1..566 2963 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19532-PA 456 GI19532-PA 38..456 158..566 1186 52.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21152-PA 469 GL21152-PA 59..469 165..566 1306 58.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25640-PA 416 GA25640-PA 59..416 165..566 1012 49.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22035-PA 576 GJ22035-PA 5..572 12..562 1307 48.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23382-PA 256 GK23382-PA 7..255 320..564 800 58.2 Plus

LD07633.hyp Sequence

Translation from 82 to 1782

> LD07633.hyp
MLSISKTKMDFLEEGRWKDPFDELLDSRTKLSKMNIVKQNVRVTYNIDSS
VENSSYIEIKEPNHKNEPLTLEDCSIKVYCPSDSISTPCDKRLGGTTGLF
ETDLSPITRLKLEGVEDSRDKCADTNEADLYVNVEILFQNINSSPKKCSN
FGKKRLSNLNKMVTAVHPSISLNPGKWRKSLNNFIRSKITETNFTKKVER
RSSICQDRKSLVLKGEHKFENKYEEDVLKYCHQCTPLPFNTAYEQHKLLN
TKKIGEGAYGEVFRCSRNQEVLKDHISDIVLKIIPLEGSTVINGEKQKTF
SQILPEIIITKKMCSLRTSKTNSTNGFVSIQKVSLVKGRYPPHFIKLWEK
YDNEKGSENDHPELFGDNQLFAVLELKFAGSDMANFKFLNSEQSYYALQQ
IILALAVGEEEYQFEHRDLHLGNILIEYTNKKHIVCTFKSSNLTLLSKGV
NVTIIDYTLSRVTINDCCYFNDLSRDEELFQATGDYQYDVYRMMRNELKN
NWSSFSPKTNIIWLSYVIVKVLDSVKYKSINTKVHRMYIDKIKELKNIIM
TFESASHCANYLFNLN*

LD07633.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Haspin-PA 566 CG40080-PA 1..566 1..566 2963 100 Plus