Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD07633.complete Sequence
1864 bp (1864 high quality bases) assembled on 2002-05-18
GenBank Submission: AY118897
> LD07633.complete
TTTTACATTATCGATTGCGGCTGTTATCGAACCATCAATCGTAATTCTTT
AAAAATTGAAAATACATAGAGCATTTAATTTAATGCTCAGCATTAGCAAA
ACAAAAATGGATTTTTTAGAGGAAGGTAGATGGAAGGATCCGTTTGATGA
ACTTTTGGACTCCAGAACGAAACTAAGTAAAATGAACATAGTAAAACAAA
ATGTACGAGTAACCTATAACATTGACTCTAGTGTTGAAAATAGCAGCTAT
ATAGAAATAAAAGAACCAAATCACAAAAACGAACCTTTAACTCTTGAAGA
TTGCTCTATAAAAGTGTATTGCCCCAGTGATTCTATATCAACTCCTTGCG
ATAAACGATTAGGAGGCACAACAGGATTATTTGAAACCGACCTCTCTCCA
ATTACTCGCTTAAAACTTGAAGGTGTGGAAGACAGTAGAGACAAATGCGC
TGATACTAATGAGGCAGATTTATATGTAAATGTTGAAATTCTTTTTCAAA
ACATAAATTCCAGCCCTAAAAAATGTTCTAATTTTGGGAAAAAACGATTG
AGTAATTTAAATAAGATGGTTACTGCTGTACACCCTTCGATTTCATTAAA
TCCGGGAAAATGGAGAAAATCGCTAAACAATTTTATCAGATCAAAAATAA
CCGAAACAAATTTCACGAAAAAGGTAGAACGTCGAAGCTCAATATGCCAG
GATCGAAAATCATTAGTTTTGAAAGGCGAACATAAATTTGAGAATAAATA
TGAAGAAGATGTTCTTAAATATTGCCATCAGTGTACACCACTTCCGTTTA
ATACTGCATACGAACAACATAAATTATTGAATACTAAGAAGATTGGCGAA
GGGGCTTATGGAGAAGTATTTCGTTGTTCGAGAAATCAAGAAGTACTGAA
AGACCACATCTCTGATATTGTATTAAAGATTATACCTTTGGAGGGTTCCA
CTGTAATTAATGGAGAAAAGCAAAAAACATTCAGTCAAATTTTACCAGAA
ATAATTATAACTAAAAAAATGTGCAGCCTTCGAACAAGTAAAACTAATTC
TACGAATGGATTTGTGAGCATACAAAAGGTATCACTAGTTAAAGGAAGGT
ATCCACCACATTTTATAAAGCTTTGGGAAAAGTATGACAACGAAAAGGGA
TCTGAAAATGACCATCCGGAACTTTTTGGAGACAATCAACTTTTTGCAGT
CCTAGAACTGAAGTTTGCCGGAAGTGACATGGCAAATTTTAAATTTTTAA
ATTCCGAACAATCATATTACGCTTTACAACAGATTATTCTAGCGCTTGCT
GTTGGTGAAGAAGAGTATCAATTTGAGCACAGGGACCTTCATTTGGGAAA
CATATTAATTGAATACACCAATAAGAAGCACATAGTTTGTACATTCAAAA
GCAGTAATTTAACTTTGCTTTCAAAAGGAGTGAACGTTACTATTATTGAC
TACACACTTTCAAGAGTTACAATTAATGACTGCTGCTATTTTAATGATCT
CTCAAGAGATGAGGAACTTTTCCAGGCAACAGGAGATTATCAATACGATG
TCTATCGAATGATGCGGAATGAGTTAAAGAACAACTGGTCATCGTTTTCA
CCCAAAACAAATATCATATGGCTATCATATGTTATCGTTAAGGTACTGGA
TAGCGTGAAATACAAAAGCATCAATACGAAAGTTCACAGGATGTACATTG
ATAAAATAAAGGAATTGAAAAACATTATAATGACATTTGAAAGTGCTTCT
CATTGCGCAAATTATCTGTTTAATTTAAATTAAGATGCATGTACTGATTG
AAAAGATTTCGAAATATATATAAAAGTGAACTTAAAAAAATTCAAAAAAA
AAAAAAAAAAAAAA
LD07633.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Haspin-RA | 2400 | Haspin-RA | 351..2197 | 1..1847 | 9235 | 100 | Plus |
Haspin.f | 2529 | Haspin.f | 682..2528 | 1..1847 | 9235 | 100 | Plus |
Haspin.c | 1797 | Haspin.c | 182..1797 | 228..1843 | 8065 | 99.9 | Plus |
Haspin.c | 1797 | Haspin.c | 10..185 | 1..176 | 880 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:31:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2RHet | 3288813 | chr2RHet | 3199624..3200536 | 169..1081 | 4565 | 100 | Plus |
chr2RHet | 3288813 | chr2RHet | 3215317..3215615 | 1281..1579 | 1495 | 100 | Plus |
chr2RHet | 3288813 | chr2RHet | 3234390..3234659 | 1574..1843 | 1335 | 99.6 | Plus |
chr2RHet | 3288813 | chr2RHet | 3215055..3215261 | 1076..1282 | 1035 | 100 | Plus |
chr2RHet | 3288813 | chr2RHet | 3199402..3199570 | 1..169 | 845 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4014305..4015217 | 169..1081 | 4565 | 100 | Plus |
2R | 25286936 | 2R | 4030000..4030298 | 1281..1579 | 1495 | 100 | Plus |
2R | 25286936 | 2R | 4049073..4049346 | 1574..1847 | 1355 | 99.6 | Plus |
2R | 25286936 | 2R | 4072689..4072962 | 1574..1847 | 1355 | 99.6 | Plus |
2R | 25286936 | 2R | 4029738..4029944 | 1076..1282 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 4014083..4014251 | 1..169 | 845 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 4015504..4016416 | 169..1081 | 4565 | 100 | Plus |
2R | 25260384 | 2R | 4031199..4031497 | 1281..1579 | 1495 | 100 | Plus |
2R | 25260384 | 2R | 4073888..4074161 | 1574..1847 | 1355 | 99.6 | Plus |
2R | 25260384 | 2R | 4050272..4050545 | 1574..1847 | 1355 | 99.6 | Plus |
2R | 25260384 | 2R | 4030937..4031143 | 1076..1282 | 1035 | 100 | Plus |
2R | 25260384 | 2R | 4015282..4015450 | 1..169 | 845 | 100 | Plus |
Blast to na_te.dros performed 2019-03-16 16:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 6798..6985 | 1658..1842 | 167 | 58.9 | Plus |
Stalker | 7256 | Stalker STALKER 7256bp | 1360..1424 | 679..616 | 115 | 66.2 | Minus |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 1030..1086 | 521..465 | 114 | 66.7 | Minus |
LD07633.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:32:30 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2RHet | 3215058..3215261 | 1079..1282 | 100 | -> | Plus |
chr2RHet | 3199402..3199569 | 1..168 | 100 | -> | Plus |
chr2RHet | 3199624..3200533 | 169..1078 | 100 | -> | Plus |
chr2RHet | 3215319..3215614 | 1283..1578 | 100 | -> | Plus |
chr2RHet | 3234395..3234659 | 1579..1843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:29:35 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Haspin-RA | 1..1701 | 83..1783 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:47:14 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Haspin-RA | 1..1701 | 83..1783 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:16:10 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Haspin-RA | 1..1701 | 83..1783 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:39:34 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Haspin-RA | 1..1701 | 83..1783 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:32:07 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Haspin-RA | 1..1701 | 83..1783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:29:35 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Haspin-RA | 1..1843 | 1..1843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:47:14 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Haspin-RA | 1..1843 | 1..1843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:16:10 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Haspin-RA | 1..1815 | 29..1843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:39:34 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Haspin-RA | 1..1843 | 1..1843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:32:07 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Haspin-RA | 1..1815 | 29..1843 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:30 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4014083..4014250 | 1..168 | 100 | -> | Plus |
2R | 4014305..4015214 | 169..1078 | 100 | -> | Plus |
2R | 4029741..4029944 | 1079..1282 | 100 | -> | Plus |
2R | 4030002..4030297 | 1283..1578 | 100 | -> | Plus |
2R | 4049078..4049342 | 1579..1843 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:30 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4014083..4014250 | 1..168 | 100 | -> | Plus |
2R | 4014305..4015214 | 169..1078 | 100 | -> | Plus |
2R | 4029741..4029944 | 1079..1282 | 100 | -> | Plus |
2R | 4030002..4030297 | 1283..1578 | 100 | -> | Plus |
2R | 4049078..4049342 | 1579..1843 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:30 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4014083..4014250 | 1..168 | 100 | -> | Plus |
2R | 4014305..4015214 | 169..1078 | 100 | -> | Plus |
2R | 4029741..4029944 | 1079..1282 | 100 | -> | Plus |
2R | 4030002..4030297 | 1283..1578 | 100 | -> | Plus |
2R | 4049078..4049342 | 1579..1843 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:16:10 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 3199348..3199515 | 1..168 | 100 | -> | Plus |
2RHet | 3215006..3215209 | 1079..1282 | 100 | -> | Plus |
2RHet | 3199570..3200479 | 169..1078 | 100 | -> | Plus |
2RHet | 3215267..3215562 | 1283..1578 | 100 | -> | Plus |
2RHet | 3234343..3234607 | 1579..1843 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:11:56 Download gff for
LD07633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4015504..4016413 | 169..1078 | 100 | -> | Plus |
2R | 4030940..4031143 | 1079..1282 | 100 | -> | Plus |
2R | 4031201..4031496 | 1283..1578 | 100 | -> | Plus |
2R | 4050277..4050541 | 1579..1843 | 100 | | Plus |
2R | 4015282..4015449 | 1..168 | 100 | -> | Plus |
LD07633.pep Sequence
Translation from 82 to 1782
> LD07633.pep
MLSISKTKMDFLEEGRWKDPFDELLDSRTKLSKMNIVKQNVRVTYNIDSS
VENSSYIEIKEPNHKNEPLTLEDCSIKVYCPSDSISTPCDKRLGGTTGLF
ETDLSPITRLKLEGVEDSRDKCADTNEADLYVNVEILFQNINSSPKKCSN
FGKKRLSNLNKMVTAVHPSISLNPGKWRKSLNNFIRSKITETNFTKKVER
RSSICQDRKSLVLKGEHKFENKYEEDVLKYCHQCTPLPFNTAYEQHKLLN
TKKIGEGAYGEVFRCSRNQEVLKDHISDIVLKIIPLEGSTVINGEKQKTF
SQILPEIIITKKMCSLRTSKTNSTNGFVSIQKVSLVKGRYPPHFIKLWEK
YDNEKGSENDHPELFGDNQLFAVLELKFAGSDMANFKFLNSEQSYYALQQ
IILALAVGEEEYQFEHRDLHLGNILIEYTNKKHIVCTFKSSNLTLLSKGV
NVTIIDYTLSRVTINDCCYFNDLSRDEELFQATGDYQYDVYRMMRNELKN
NWSSFSPKTNIIWLSYVIVKVLDSVKYKSINTKVHRMYIDKIKELKNIIM
TFESASHCANYLFNLN*
LD07633.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF16653-PA | 535 | GF16653-PA | 20..534 | 30..565 | 1207 | 47 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH13564-PA | 548 | GH13564-PA | 141..547 | 166..562 | 1197 | 54.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Haspin-PA | 566 | CG40080-PA | 1..566 | 1..566 | 2963 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI19532-PA | 456 | GI19532-PA | 38..456 | 158..566 | 1186 | 52.7 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL21152-PA | 469 | GL21152-PA | 59..469 | 165..566 | 1306 | 58.9 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA25640-PA | 416 | GA25640-PA | 59..416 | 165..566 | 1012 | 49.6 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ22035-PA | 576 | GJ22035-PA | 5..572 | 12..562 | 1307 | 48.6 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK23382-PA | 256 | GK23382-PA | 7..255 | 320..564 | 800 | 58.2 | Plus |
LD07633.hyp Sequence
Translation from 82 to 1782
> LD07633.hyp
MLSISKTKMDFLEEGRWKDPFDELLDSRTKLSKMNIVKQNVRVTYNIDSS
VENSSYIEIKEPNHKNEPLTLEDCSIKVYCPSDSISTPCDKRLGGTTGLF
ETDLSPITRLKLEGVEDSRDKCADTNEADLYVNVEILFQNINSSPKKCSN
FGKKRLSNLNKMVTAVHPSISLNPGKWRKSLNNFIRSKITETNFTKKVER
RSSICQDRKSLVLKGEHKFENKYEEDVLKYCHQCTPLPFNTAYEQHKLLN
TKKIGEGAYGEVFRCSRNQEVLKDHISDIVLKIIPLEGSTVINGEKQKTF
SQILPEIIITKKMCSLRTSKTNSTNGFVSIQKVSLVKGRYPPHFIKLWEK
YDNEKGSENDHPELFGDNQLFAVLELKFAGSDMANFKFLNSEQSYYALQQ
IILALAVGEEEYQFEHRDLHLGNILIEYTNKKHIVCTFKSSNLTLLSKGV
NVTIIDYTLSRVTINDCCYFNDLSRDEELFQATGDYQYDVYRMMRNELKN
NWSSFSPKTNIIWLSYVIVKVLDSVKYKSINTKVHRMYIDKIKELKNIIM
TFESASHCANYLFNLN*
LD07633.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Haspin-PA | 566 | CG40080-PA | 1..566 | 1..566 | 2963 | 100 | Plus |