Clone LD07634 Report

Search the DGRC for LD07634

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:76
Well:34
Vector:pBS SK-
Associated Gene/Transcriptcsul-RA
Protein status:LD07634.pep: gold
Preliminary Size:2526
Sequenced Size:1999

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3730 2002-01-01 Sim4 clustering to Release 2
CG3730 2002-06-13 Blastp of sequenced clone
CG3730 2003-01-01 Sim4 clustering to Release 3
csul 2008-04-29 Release 5.5 accounting
csul 2008-08-15 Release 5.9 accounting
csul 2008-12-18 5.12 accounting

Clone Sequence Records

LD07634.complete Sequence

1999 bp (1999 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122153

> LD07634.complete
TCACACTGCTGCCGGTCACCGCATTTTTTGGACTTTTTGAAGAGGCGGTG
TGCGGATTGAAAGATGAATTACTACGTCTGTCTGCACCAGGAGGGTGTTA
ATAGCATACCCAAGTTAATCGAGAAGGCCTTCGCGAACAACTATAATGTG
GTTTCCACCTCTATCAACGCCAATATGTTGCCCTTCGAACCACACGAATC
GGATCCCACATATCCGGCCACAATTTTGAGCGGCAGCGACTGGAATTCCA
AGGTGATATTTACCATGTCCGACGTGAATGTGGACTCGCCGAATGACAAG
CTGCGCGAACACGCAAAGGAGGTATTCATGAGGGACGTGGCCTGGGCGGA
GCACCTGCAAAATGTGGGCAACCTGATGGTACGGCTGCGCGGTCCGGAAA
ACGAGAATCTGGCCTCCATTGTGCTGGCCAAAACAAAGGATGATTTTCCT
TCAGGGAACTGGTTCATCCAAGTGCCCATCACCAATCCAGAACTGGCCAC
ATTCGAGCACCGAAAGGATGCCACCGCCGAGGAGGTGGCTGAAGCGGAAT
CGAATGACCCGTGGAACTGGTGGAATAACCTGCGCATGGTCACCAAACAC
AGCACCAAAGTGAAGGTTGTGATAGAGCTAAACGATGCTGATCGACCCAG
CAAGGAAACAGTGCGTCGCTGGTTGGGCGAACCAATCGAGGCAATCATCA
TTCCGTCTTCCCTGTTCGTCAGAAACCGCTCCAACTACTGTGTGCTGAAG
AAGGAGTGGCAGCTCATCGTCGGGCACTTCATCTCGGTACGGGCCAACAT
CATCATCTCCACAAATCCCAACGATAAGGCTTTGTGCCAGTACGCGGATT
ACGTAAATAAGCTAATTAATGATAACTGCGATAAGCACATGCTAAACAGC
TATGAAAACATGCTGGAAATTCCACTGCAGCCTCTTTGCGATAATCTGGA
CACCTATACCTATGAGGTATTCGAAACTGATCCTGTCAAATACAAACTCT
ATCAGGATGCCGTACAAGCGGCCCTGTTGGATCGAGTAAGCGCTGCGGAG
GCTAAAACGAAACTGACAGTTGTAATGCTACTGGGTGGAGGACGAGGTCC
TTTAGCGAGAGCTGTTTTCAATGCTGCCGAGTTAACGAAGCGCAAAGTTC
GCCTCTACATCATAGAAAAGAATCCCAATGCCATCCGCACCCTCTCCAAC
ATGGTTAAAACGCTTTGGGCCGATAAGGATGTTCACATTTTTTCAAAGGA
CATGCGGGACTTTTCCCCTCCAGAGCTGGCTGACATCATGGTTTCGGAGT
TACTTGGTTCCTTTGGCGATAATGAACTTTCGCCCGAGTGCCTTGATGGA
GCACTGAAGCTGCTCAAACCGGATGGAATCAGTATACCCTACAAATCCAC
CTCCTACATTAATCCACTGATGTCAGCAGTGCTGCACCAAAATGTCTGCC
AATTGTTACCAACCTATCCTGCCTTCGACTACGGCTATGTGTCGCTGCTA
AAGAATATTTACCATATTGACGAGCCGCAGGCTCTGTTTGAATTCGTACA
TCCTAATCGAGCGGAAAATATTGACAATACTCGCTGCAAGACGGTTTCAT
TTAAAGTCAATAAAGATTGCGTGCTGCACGGAATCGGCGGATACTTTGAT
ACCCATTTGTACAAGGACATCTGCCTAAGCATCAATCCTCTGACCCATAC
GCCTGGCATGTTCTCCTGGTTCCCCATGTTCTTCGCAACGCGTCCAAGAA
CTCTGAGGGAGGGACAGACTATATCCATCCAGTTTTGGCGATGCGTGGAT
GCAACCAAAGTGTGGTACGAATGGCAGGTGGTCAATTCTCCAGACGATTG
GGAGCACCATAACACACGCGGGACAGGTTACAACATGCGATTGTAACAGC
AGACGATGTAATAACAACCAATAGCCAAATAATCGGCATAATTTTTTTGA
ACTGCAATAAGAATCAAACTAAAGAGACCTTAAAAAAAAAAAAAAAAAA

LD07634.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
csul-RA 2173 csul-RA 14..1996 1..1983 9915 100 Plus
csul-RB 1979 csul-RB 452..1979 454..1981 7640 100 Plus
csul.a 1957 csul.a 448..1957 472..1981 7550 100 Plus
csul-RB 1979 csul-RB 14..452 1..439 2195 100 Plus
csul.a 1957 csul.a 10..448 1..439 2195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12153494..12154006 1228..1740 2565 100 Plus
chr2R 21145070 chr2R 12152519..12152979 439..899 2305 100 Plus
chr2R 21145070 chr2R 12152037..12152475 1..439 2195 100 Plus
chr2R 21145070 chr2R 12154071..12154312 1740..1981 1210 100 Plus
chr2R 21145070 chr2R 12153039..12153206 898..1065 840 100 Plus
chr2R 21145070 chr2R 12153266..12153429 1065..1228 820 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16266141..16266653 1228..1740 2565 100 Plus
2R 25286936 2R 16265166..16265626 439..899 2305 100 Plus
2R 25286936 2R 16264684..16265122 1..439 2195 100 Plus
2R 25286936 2R 16266718..16266961 1740..1983 1220 100 Plus
2R 25286936 2R 16265686..16265853 898..1065 840 100 Plus
2R 25286936 2R 16265913..16266076 1065..1228 820 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16267340..16267852 1228..1740 2565 100 Plus
2R 25260384 2R 16266365..16266825 439..899 2305 100 Plus
2R 25260384 2R 16265883..16266321 1..439 2195 100 Plus
2R 25260384 2R 16267917..16268160 1740..1983 1220 100 Plus
2R 25260384 2R 16266885..16267052 898..1065 840 100 Plus
2R 25260384 2R 16267112..16267275 1065..1228 820 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:41:49 has no hits.

LD07634.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:42:51 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12154072..12154312 1741..1981 100   Plus
chr2R 12152037..12152475 1..439 100 -> Plus
chr2R 12152520..12152979 440..899 100 -> Plus
chr2R 12153041..12153206 900..1065 100 -> Plus
chr2R 12153267..12153429 1066..1228 100 -> Plus
chr2R 12153495..12154006 1229..1740 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:39:58 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RA 1..1833 64..1896 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:20:43 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RA 1..1833 64..1896 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:38:47 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RA 1..1833 64..1896 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:11:41 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RA 1..1833 64..1896 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:48:00 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RA 1..1833 64..1896 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:46:37 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RA 10..1990 1..1981 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:20:43 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RA 10..1990 1..1981 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:47 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RA 33..2013 1..1981 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:11:42 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RA 10..1990 1..1981 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:48:00 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RA 33..2013 1..1981 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:51 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16266719..16266959 1741..1981 100   Plus
2R 16264684..16265122 1..439 100 -> Plus
2R 16265167..16265626 440..899 100 -> Plus
2R 16265688..16265853 900..1065 100 -> Plus
2R 16265914..16266076 1066..1228 100 -> Plus
2R 16266142..16266653 1229..1740 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:51 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16266719..16266959 1741..1981 100   Plus
2R 16264684..16265122 1..439 100 -> Plus
2R 16265167..16265626 440..899 100 -> Plus
2R 16265688..16265853 900..1065 100 -> Plus
2R 16265914..16266076 1066..1228 100 -> Plus
2R 16266142..16266653 1229..1740 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:51 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16266719..16266959 1741..1981 100   Plus
2R 16264684..16265122 1..439 100 -> Plus
2R 16265167..16265626 440..899 100 -> Plus
2R 16265688..16265853 900..1065 100 -> Plus
2R 16265914..16266076 1066..1228 100 -> Plus
2R 16266142..16266653 1229..1740 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:47 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12152189..12152627 1..439 100 -> Plus
arm_2R 12152672..12153131 440..899 100 -> Plus
arm_2R 12153193..12153358 900..1065 100 -> Plus
arm_2R 12153419..12153581 1066..1228 100 -> Plus
arm_2R 12153647..12154158 1229..1740 100 -> Plus
arm_2R 12154224..12154464 1741..1981 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:44:10 Download gff for LD07634.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16267918..16268158 1741..1981 100   Plus
2R 16265883..16266321 1..439 100 -> Plus
2R 16266366..16266825 440..899 100 -> Plus
2R 16266887..16267052 900..1065 100 -> Plus
2R 16267113..16267275 1066..1228 100 -> Plus
2R 16267341..16267852 1229..1740 100 -> Plus

LD07634.pep Sequence

Translation from 63 to 1895

> LD07634.pep
MNYYVCLHQEGVNSIPKLIEKAFANNYNVVSTSINANMLPFEPHESDPTY
PATILSGSDWNSKVIFTMSDVNVDSPNDKLREHAKEVFMRDVAWAEHLQN
VGNLMVRLRGPENENLASIVLAKTKDDFPSGNWFIQVPITNPELATFEHR
KDATAEEVAEAESNDPWNWWNNLRMVTKHSTKVKVVIELNDADRPSKETV
RRWLGEPIEAIIIPSSLFVRNRSNYCVLKKEWQLIVGHFISVRANIIIST
NPNDKALCQYADYVNKLINDNCDKHMLNSYENMLEIPLQPLCDNLDTYTY
EVFETDPVKYKLYQDAVQAALLDRVSAAEAKTKLTVVMLLGGGRGPLARA
VFNAAELTKRKVRLYIIEKNPNAIRTLSNMVKTLWADKDVHIFSKDMRDF
SPPELADIMVSELLGSFGDNELSPECLDGALKLLKPDGISIPYKSTSYIN
PLMSAVLHQNVCQLLPTYPAFDYGYVSLLKNIYHIDEPQALFEFVHPNRA
ENIDNTRCKTVSFKVNKDCVLHGIGGYFDTHLYKDICLSINPLTHTPGMF
SWFPMFFATRPRTLREGQTISIQFWRCVDATKVWYEWQVVNSPDDWEHHN
TRGTGYNMRL*

LD07634.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13582-PA 605 GF13582-PA 1..605 1..610 2773 82 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20586-PA 605 GG20586-PA 1..605 1..610 3033 91.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22107-PA 604 GH22107-PA 1..604 1..610 2559 76.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
csul-PA 610 CG3730-PA 1..610 1..610 3264 100 Plus
csul-PB 605 CG3730-PB 1..605 1..610 3219 99.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19242-PA 604 GI19242-PA 1..604 1..610 2519 76.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10719-PA 604 GL10719-PA 1..604 1..610 2568 76.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17646-PA 604 GA17646-PA 1..604 1..610 2585 77 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21676-PA 605 GM21676-PA 1..605 1..610 3059 92.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11176-PA 605 GD11176-PA 1..605 1..610 3014 91.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20318-PA 604 GJ20318-PA 1..604 1..610 2580 77.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20749-PA 606 GK20749-PA 5..606 1..610 2568 75.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11771-PA 605 GE11771-PA 1..605 1..610 3008 92.6 Plus

LD07634.hyp Sequence

Translation from 63 to 1895

> LD07634.hyp
MNYYVCLHQEGVNSIPKLIEKAFANNYNVVSTSINANMLPFEPHESDPTY
PATILSGSDWNSKVIFTMSDVNVDSPNDKLREHAKEVFMRDVAWAEHLQN
VGNLMVRLRGPENENLASIVLAKTKDDFPSGNWFIQVPITNPELATFEHR
KDATAEEVAEAESNDPWNWWNNLRMVTKHSTKVKVVIELNDADRPSKETV
RRWLGEPIEAIIIPSSLFVRNRSNYCVLKKEWQLIVGHFISVRANIIIST
NPNDKALCQYADYVNKLINDNCDKHMLNSYENMLEIPLQPLCDNLDTYTY
EVFETDPVKYKLYQDAVQAALLDRVSAAEAKTKLTVVMLLGGGRGPLARA
VFNAAELTKRKVRLYIIEKNPNAIRTLSNMVKTLWADKDVHIFSKDMRDF
SPPELADIMVSELLGSFGDNELSPECLDGALKLLKPDGISIPYKSTSYIN
PLMSAVLHQNVCQLLPTYPAFDYGYVSLLKNIYHIDEPQALFEFVHPNRA
ENIDNTRCKTVSFKVNKDCVLHGIGGYFDTHLYKDICLSINPLTHTPGMF
SWFPMFFATRPRTLREGQTISIQFWRCVDATKVWYEWQVVNSPDDWEHHN
TRGTGYNMRL*

LD07634.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
csul-PA 610 CG3730-PA 1..610 1..610 3264 100 Plus
csul-PB 605 CG3730-PB 1..605 1..610 3219 99.2 Plus