Clone LD07767 Report

Search the DGRC for LD07767

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:77
Well:67
Vector:pBS SK-
Associated Gene/TranscriptHydr2-RA
Protein status:LD07767.pep: gold
Preliminary Size:2184
Sequenced Size:2291

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3488 2001-01-01 Release 2 assignment
CG3488 2003-01-01 Sim4 clustering to Release 3
CG3488 2003-04-28 Blastp of sequenced clone
CG3488 2008-04-29 Release 5.5 accounting
CG3488 2008-08-15 Release 5.9 accounting
CG3488 2008-12-18 5.12 accounting

Clone Sequence Records

LD07767.complete Sequence

2291 bp (2291 high quality bases) assembled on 2003-04-28

GenBank Submission: BT010082

> LD07767.complete
AAAATCGCAGCAGGCGAATTTTCGGAAATTTCGAGCAGCATTTAAATCCG
GTTCTCGTGGAAAGTGTTAACTTATTTACGCCAGCCAAAAAACGTAGCAA
ACGCACATAGAAAGGACGAAAGCAACGCAGATTGCCCTGGGAAACACGAA
GAGAAGCCGCAAGGAGGCGCGCCAAATAGCAGGATAAGTGGAGTTCGATT
GGATGACAAGGCGGGTCACTTCCTCGGATCCTGGCTAAAAACTCGCAGCA
CCCAGCGCCACCATGTCCACCGCCTTCCTTACCCTCATCGCCGTCATCGT
GTGCATCCTGTTCCGCATCCTTAATGTTCACAGCCAGCCGCTGAAGCCCA
GTGTGTGGTGCCTTGATGCCCACTTCCTCGACTGCCTCTACAAGATCGCG
CCCGTCCTAAGGGAACCATACATTCCCCCGCGACTTTGGGGCTTTAGTGG
CCATGTGCAGACGGTCTTGCACAGCATTGTTGGCCGGGTACGATGTCCCT
GGCCACTCGGAGAACGTGTTTACATGTCGCTAAAGGATGGCTCCACATTG
ACCTACGACTTGTACCAGCCACTCAACGAACAGGAGGATGACATCACGGT
GGCCATTTGCCCGGGCATCGCCAACAGCTCGGAATCGGTGTACATTCGCA
CCTTCGTGCACTTGGCCCAGTGCAATGGATACCGCTGTGCGGTGCTAAAT
CACATTGGCGCACTGCGCAGTGTCCAGGTGACCTCCACACGCATTTTCAC
CTACGGCCACACGGAGGATTTCGCGGCCATGGTAGAGCATTTGCACCAGA
AGTACCGCCAAAGTCGAATTGTCGCGGTTGGTTTCAGTCTGGGCGGCAAT
CTGGTCACCAAGTACATGGGCGAGGACCAGAAGACAAAGCCAGACAAGGT
CATTGGAGGCATATCCATATGTCAAGGCTACAATGCCGTCGAAGGCACCA
AGTGGCTGCTCAACTGGCAGAATTTCCGCCGCTTTTACCTATACATCATG
ACTGAGAACGTAAAGAGCATTATCCTGCGACATCGACATATCCTCCTGTC
CGACGAGGTCAAGGCTCGGCATAATCTCAACGAGCGCGAAATCATCGCGG
CTGCCACTCTGCCCGAGTTGGATGAGGCTTACACGCGGAGAGTGTACAAC
TTTCCCTCCACCCAGGAGTTGTACAAGTGGAGCTCGTCGCTGTTTTACTT
CGATACGATCAAGAAGCCAATGATCTTCATCAACGCCAAGGATGATCCCT
TGATCCCGGAGGATTTGCTGCATCCCATCAAGGAGTATGCCACGACGCGT
CAAAACACCGCCTATGTGGAGGTGGCCCATGGCGGTCATCTGGGCTTCTA
TGAGGGCGGCTTCCTGTACCCGAACCCTGTCACTTGGCTGGACCGTACGC
TTGTGGCGATGGTTGGGTCCTTGGTCATGATGCACGAAGTCGGCAAGGTG
GCCCCTTAGGCCTGGTTGCTATTTTCACACGCATACACGACTATTTAACG
CTTCTGTGTCAAAATTGGTTGTCGCTGTCGAATATAAATCTTTGAAGAAC
CATCGGAACGGAAGAGAGCCCGAAAGACCCCATACATATAGTTCTAACAT
ATGATATCGTTGTGCAGCAATTATAAATTATCAGCCGCGCAAGCATAAAT
TGATGTATACTTTTGCAAAGTGCATTTAAAACAGAAATTGTAGTTTTTTG
AGAACGATTTTTATGCTTTTTAATGACTTTTTGAAGAGCCAAACATACAA
TGTATCAGTTGAACTCGTACCTTAGTTAGTTAACGCGACCACATGTATCC
ATGTACTTATGTCTAAGCAAATTCCTATTTATTAGCATTTTCCTTTGTGA
TCTAACAGTTTTTAATTACGTACATTTTTATATGTGAAATGTACACCACA
CGCCGCACACAATATACGATGTATGACAGTAATTATAAATTATAAGTCCT
CGACCGCACCACAAGCATATAAAATAGCAAGAATATTGCCTTAGTGTAGA
CCTCGTTTTGTATGTGTGAATATGATTTGAACTATTCATTTTGTACTATG
ATGCATTTCACGGAAATCAAAGAGAAACCAAATGAAAGTTTGCCCAACGT
CGGCTTCATTTTTGTATACTTTTTTTGAACTTTACCAAGTTGATAGTCAG
ATTTGTTTACCAATGTAGTGGAGTGGAGAATATTTATAAATGTATTTGTA
AATGTATTTATAAATGTATATTGAAACAAATAAATAACAGTTGGCCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD07767.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
Hydr2.d 2971 Hydr2.d 134..2384 1..2251 11225 99.9 Plus
Hydr2-RA 2391 Hydr2-RA 134..2384 1..2251 11225 99.9 Plus
Hydr2.b 2392 Hydr2.b 553..2386 418..2251 9140 99.8 Plus
Hydr2.b 2392 Hydr2.b 12..429 1..418 2090 100 Plus
Hydr2.d 2971 Hydr2.d 2495..2860 1886..2251 1785 99.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3167660..3168611 1293..2244 4730 99.8 Plus
chr2L 23010047 chr2L 3163285..3163701 1..417 2085 100 Plus
chr2L 23010047 chr2L 3168729..3169087 1886..2244 1780 99.7 Plus
chr2L 23010047 chr2L 3166828..3167183 587..942 1765 99.7 Plus
chr2L 23010047 chr2L 3167249..3167598 943..1292 1735 99.7 Plus
chr2L 23010047 chr2L 3166595..3166764 418..587 850 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3168035..3168993 1293..2251 4765 99.8 Plus
2L 23513712 2L 3163658..3164074 1..417 2085 100 Plus
2L 23513712 2L 3169104..3169469 1886..2251 1785 99.2 Plus
2L 23513712 2L 3167203..3167558 587..942 1780 100 Plus
2L 23513712 2L 3167624..3167973 943..1292 1750 100 Plus
2L 23513712 2L 3166970..3167139 418..587 850 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3168035..3168993 1293..2251 4765 99.7 Plus
2L 23513712 2L 3163658..3164074 1..417 2085 100 Plus
2L 23513712 2L 3169104..3169469 1886..2251 1785 99.1 Plus
2L 23513712 2L 3167203..3167558 587..942 1780 100 Plus
2L 23513712 2L 3167624..3167973 943..1292 1750 100 Plus
2L 23513712 2L 3166970..3167139 418..587 850 100 Plus
Blast to na_te.dros performed 2019-03-15 22:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
Porto1 4682 Porto1 DOC5 4682bp 1324..1381 2209..2149 125 73.8 Minus

LD07767.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:15:36 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3166829..3167183 588..942 99 -> Plus
chr2L 3163285..3163701 1..417 100 -> Plus
chr2L 3166595..3166764 418..587 100 -> Plus
chr2L 3167249..3167598 943..1292 99 -> Plus
chr2L 3167660..3168613 1293..2246 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:40:34 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
CG3488-RA 1..1197 263..1459 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:44:35 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
Hydr2-RA 1..1197 263..1459 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:12:19 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
Hydr2-RA 1..1197 263..1459 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:36:03 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
CG3488-RA 1..1197 263..1459 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:23 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
Hydr2-RA 1..1197 263..1459 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:55:17 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
CG3488-RA 12..2257 1..2246 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:44:34 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
Hydr2-RA 12..2257 1..2246 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:12:19 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
Hydr2-RA 14..2259 1..2246 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:36:03 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
CG3488-RA 12..2257 1..2246 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:23 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
Hydr2-RA 14..2259 1..2246 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:36 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3163658..3164074 1..417 100 -> Plus
2L 3166970..3167139 418..587 100 -> Plus
2L 3167204..3167558 588..942 100 -> Plus
2L 3167624..3167973 943..1292 100 -> Plus
2L 3168035..3168988 1293..2246 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:36 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3163658..3164074 1..417 100 -> Plus
2L 3166970..3167139 418..587 100 -> Plus
2L 3167204..3167558 588..942 100 -> Plus
2L 3167624..3167973 943..1292 100 -> Plus
2L 3168035..3168988 1293..2246 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:36 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3163658..3164074 1..417 100 -> Plus
2L 3166970..3167139 418..587 100 -> Plus
2L 3167204..3167558 588..942 100 -> Plus
2L 3167624..3167973 943..1292 100 -> Plus
2L 3168035..3168988 1293..2246 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:12:19 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3163658..3164074 1..417 100 -> Plus
arm_2L 3166970..3167139 418..587 100 -> Plus
arm_2L 3167204..3167558 588..942 100 -> Plus
arm_2L 3167624..3167973 943..1292 100 -> Plus
arm_2L 3168035..3168988 1293..2246 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:06:03 Download gff for LD07767.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3167204..3167558 588..942 100 -> Plus
2L 3163658..3164074 1..417 100 -> Plus
2L 3166970..3167139 418..587 100 -> Plus
2L 3167624..3167973 943..1292 100 -> Plus
2L 3168035..3168988 1293..2246 99   Plus

LD07767.pep Sequence

Translation from 262 to 1458

> LD07767.pep
MSTAFLTLIAVIVCILFRILNVHSQPLKPSVWCLDAHFLDCLYKIAPVLR
EPYIPPRLWGFSGHVQTVLHSIVGRVRCPWPLGERVYMSLKDGSTLTYDL
YQPLNEQEDDITVAICPGIANSSESVYIRTFVHLAQCNGYRCAVLNHIGA
LRSVQVTSTRIFTYGHTEDFAAMVEHLHQKYRQSRIVAVGFSLGGNLVTK
YMGEDQKTKPDKVIGGISICQGYNAVEGTKWLLNWQNFRRFYLYIMTENV
KSIILRHRHILLSDEVKARHNLNEREIIAAATLPELDEAYTRRVYNFPST
QELYKWSSSLFYFDTIKKPMIFINAKDDPLIPEDLLHPIKEYATTRQNTA
YVEVAHGGHLGFYEGGFLYPNPVTWLDRTLVAMVGSLVMMHEVGKVAP*

LD07767.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20607-PA 344 GF20607-PA 1..344 1..344 1766 94.5 Plus
Dana\GF11959-PA 534 GF11959-PA 116..462 6..365 280 24.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24924-PA 398 GG24924-PA 1..398 1..398 2111 97.5 Plus
Dere\GG23418-PA 521 GG23418-PA 103..449 9..365 283 24.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11186-PA 350 GH11186-PA 4..345 53..394 1676 93 Plus
Dgri\GH13900-PA 52 GH13900-PA 1..52 1..52 269 94.2 Plus
Dgri\GH20397-PA 439 GH20397-PA 20..366 9..365 269 24.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Hydr2-PB 398 CG3488-PB 1..398 1..398 2118 100 Plus
Hydr2-PA 398 CG3488-PA 1..398 1..398 2118 100 Plus
Hydr2-PC 311 CG3488-PC 1..311 88..398 1642 100 Plus
Hydr1-PE 438 CG8058-PE 20..366 9..365 278 24.7 Plus
Hydr1-PD 438 CG8058-PD 20..366 9..365 278 24.7 Plus
Hydr1-PB 438 CG8058-PB 20..366 9..365 278 24.7 Plus
Hydr1-PC 525 CG8058-PC 107..453 9..365 278 24.7 Plus
Hydr1-PA 525 CG8058-PA 107..453 9..365 278 24.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18063-PA 399 GI18063-PA 1..399 1..398 2011 92.5 Plus
Dmoj\GI19583-PA 438 GI19583-PA 20..366 9..365 275 25.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26497-PA 401 GL26497-PA 1..396 1..395 1983 92.9 Plus
Dper\GL17624-PA 527 GL17624-PA 109..455 9..365 281 24.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17475-PA 401 GA17475-PA 1..396 1..395 1983 92.9 Plus
Dpse\GA24851-PA 527 GA24851-PA 109..455 9..365 281 24.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18400-PA 398 GM18400-PA 1..398 1..398 2130 98.5 Plus
Dsec\GM21099-PA 523 GM21099-PA 105..451 9..365 284 24.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23213-PA 398 GD23213-PA 1..398 1..398 2130 98.5 Plus
Dsim\GD10634-PA 525 GD10634-PA 107..453 9..365 286 24.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16506-PA 399 GJ16506-PA 1..395 1..395 2009 92.9 Plus
Dvir\GJ14963-PA 539 GJ14963-PA 116..462 9..365 287 25.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15564-PA 399 GK15564-PA 1..391 1..391 2018 94.1 Plus
Dwil\GK22950-PA 432 GK22950-PA 20..366 9..365 282 23.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18216-PA 398 GE18216-PA 1..398 1..398 2114 97.7 Plus
Dyak\GE19258-PA 521 GE19258-PA 103..449 9..365 283 24.7 Plus

LD07767.hyp Sequence

Translation from 262 to 1458

> LD07767.hyp
MSTAFLTLIAVIVCILFRILNVHSQPLKPSVWCLDAHFLDCLYKIAPVLR
EPYIPPRLWGFSGHVQTVLHSIVGRVRCPWPLGERVYMSLKDGSTLTYDL
YQPLNEQEDDITVAICPGIANSSESVYIRTFVHLAQCNGYRCAVLNHIGA
LRSVQVTSTRIFTYGHTEDFAAMVEHLHQKYRQSRIVAVGFSLGGNLVTK
YMGEDQKTKPDKVIGGISICQGYNAVEGTKWLLNWQNFRRFYLYIMTENV
KSIILRHRHILLSDEVKARHNLNEREIIAAATLPELDEAYTRRVYNFPST
QELYKWSSSLFYFDTIKKPMIFINAKDDPLIPEDLLHPIKEYATTRQNTA
YVEVAHGGHLGFYEGGFLYPNPVTWLDRTLVAMVGSLVMMHEVGKVAP*

LD07767.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Hydr2-PB 398 CG3488-PB 1..398 1..398 2118 100 Plus
Hydr2-PA 398 CG3488-PA 1..398 1..398 2118 100 Plus
Hydr2-PC 311 CG3488-PC 1..311 88..398 1642 100 Plus
Hydr1-PE 438 CG8058-PE 20..366 9..365 278 24.7 Plus
Hydr1-PD 438 CG8058-PD 20..366 9..365 278 24.7 Plus