BDGP Sequence Production Resources |
Search the DGRC for LD07775
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 77 |
Well: | 75 |
Vector: | pBS SK- |
Associated Gene/Transcript | smt3-RA |
Protein status: | LD07775.pep: gold |
Preliminary Size: | 897 |
Sequenced Size: | 689 |
Gene | Date | Evidence |
---|---|---|
CG4494 | 2001-01-01 | Release 2 assignment |
CG4494 | 2001-10-10 | Blastp of sequenced clone |
smt3 | 2008-04-29 | Release 5.5 accounting |
smt3 | 2008-08-15 | Release 5.9 accounting |
smt3 | 2008-12-18 | 5.12 accounting |
689 bp (689 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061090
> LD07775.complete CAAAAGGAAGCCGCTTGTGATAAATTTCAACTTCCATCAGCAAGCACTGA ATTTGAGGAAATCAGCACGCCCGGCATTCGACGCTCCGCAAAAGAAAAAA AAAACTTTTTTGACCACTTAGCAGCTTCAACAAGCAACCAAAAAATCAAC ATGTCTGACGAAAAGAAGGGAGGTGAGACCGAGCACATCAACCTGAAGGT CCTCGGCCAGGACAACGCCGTCGTCCAGTTCAAGATCAAGAAGCACACAC CCTTGAGGAAGCTGATGAACGCCTACTGCGACCGTGCCGGACTCTCCATG CAGGTGGTGCGCTTCCGTTTCGACGGACAGCCCATCAACGAGAACGACAC TCCGACCTCGCTGGAGATGGAGGAGGGCGACACCATCGAGGTTTACCAGC AGCAGACTGGTGGCGCTCCATAAGATTACTTAGTTAAGTTAGTTACTCCT CTTACAACTACACACTTAAAACGAAAAAGAAAAAAATACAAGAAAAACCA CAAAAGCAAAAACACAACAACAACAACATGAAGAATCCAACAAACCAGGC CCTAAGAATCGATTGAATATGCTTTTAGTACAACTGTAGATTCTAAATGC GTCTGTGTGCGTAAATAACAAAAACATTTGCAGACAAGAAAATGGTAAAT AAAGCATTTTATAAACTACACAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
smt3-RA | 953 | smt3-RA | 180..854 | 1..675 | 3375 | 100 | Plus |
smt3.a | 640 | smt3.a | 85..640 | 120..675 | 2780 | 100 | Plus |
nc_1515.a | 503 | nc_1515.a | 1..401 | 469..69 | 2005 | 100 | Minus |
smt3.a | 640 | smt3.a | 22..88 | 1..67 | 335 | 100 | Plus |
nc_1515.a | 503 | nc_1515.a | 418..482 | 65..1 | 325 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 6965857..6966463 | 671..63 | 2965 | 99.5 | Minus |
chr2L | 23010047 | chr2L | 6966584..6966648 | 65..1 | 325 | 100 | Minus |
chrU | 10048995 | chrU | 7157988..7158072 | 1..85 | 320 | 91.8 | Plus |
chr3RHet | 2517486 | chr3RHet | 138663..138747 | 1..85 | 320 | 91.8 | Plus |
chrU | 10048995 | chrU | 900519..900603 | 85..1 | 305 | 90.6 | Minus |
chrU | 10048995 | chrU | 8275220..8275304 | 85..1 | 305 | 90.6 | Minus |
chrU | 10048995 | chrU | 8784409..8784493 | 1..85 | 305 | 90.6 | Plus |
chrU | 10048995 | chrU | 9980195..9980279 | 1..85 | 305 | 90.6 | Plus |
chr2RHet | 3288813 | chr2RHet | 3077848..3077932 | 1..85 | 305 | 90.6 | Plus |
chrU | 10048995 | chrU | 3036545..3036587 | 1..43 | 200 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6966776..6967388 | 675..63 | 3065 | 100 | Minus |
2L | 23513712 | 2L | 6967508..6967572 | 65..1 | 325 | 100 | Minus |
U | 3151297 | U | 1159436..1159520 | 1..85 | 320 | 91.8 | Plus |
3R | 32079331 | 3R | 1295636..1295720 | 85..1 | 320 | 91.8 | Minus |
U | 3151297 | U | 2193912..2193996 | 1..85 | 305 | 90.6 | Plus |
U | 3151297 | U | 2395891..2395975 | 85..1 | 305 | 90.6 | Minus |
Y | 3667352 | Y | 2005149..2005233 | 1..85 | 305 | 90.6 | Plus |
Y | 3667352 | Y | 2114725..2114809 | 1..85 | 305 | 90.6 | Plus |
3L | 28110227 | 3L | 27654227..27654311 | 85..1 | 305 | 90.6 | Minus |
3CEN | 744266 | 3CEN | 24788..24830 | 1..43 | 200 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6966776..6967388 | 675..63 | 3065 | 100 | Minus |
2L | 23513712 | 2L | 6967508..6967572 | 65..1 | 325 | 100 | Minus |
3R | 31820162 | 3R | 1093214..1093298 | 85..1 | 320 | 91.7 | Minus |
Y | 3410481 | Y | 2213834..2213918 | 1..85 | 305 | 90.5 | Plus |
Y | 3410481 | Y | 2104258..2104342 | 1..85 | 305 | 90.5 | Plus |
3L | 28103327 | 3L | 27647327..27647411 | 85..1 | 305 | 90.5 | Minus |
Unmapped_scaffold_01 | 76224 | Unmapped_scaffold_01 | 24788..24830 | 1..43 | 200 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 484..547 | 1..64 | 158 | 71.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 6965857..6966001 | 527..671 | 100 | == | Minus |
chr2L | 6966061..6966460 | 66..467 | 99 | <- | Minus |
chr2L | 6966584..6966611 | 38..65 | 100 | == | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smt3-RA | 1..273 | 151..423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smt3-RA | 1..273 | 151..423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smt3-RA | 1..273 | 151..423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smt3-RA | 1..273 | 151..423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smt3-RA | 1..273 | 151..423 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smt3-RA | 22..692 | 1..671 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smt3-RA | 22..692 | 1..671 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smt3-RA | 73..743 | 1..671 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smt3-RA | 22..692 | 1..671 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smt3-RA | 73..743 | 1..671 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6966780..6967385 | 66..671 | 100 | <- | Minus |
2L | 6967508..6967572 | 1..65 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6966780..6967385 | 66..671 | 100 | <- | Minus |
2L | 6967508..6967572 | 1..65 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6966780..6967385 | 66..671 | 100 | <- | Minus |
2L | 6967508..6967572 | 1..65 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 6966780..6967385 | 66..671 | 100 | <- | Minus |
arm_2L | 6967508..6967572 | 1..65 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6966780..6967385 | 66..671 | 100 | <- | Minus |
2L | 6967508..6967572 | 1..65 | 100 | Minus |
Translation from 0 to 422
> LD07775.hyp QKEAACDKFQLPSASTEFEEISTPGIRRSAKEKKNFFDHLAASTSNQKIN MSDEKKGGETEHINLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRAGLSM QVVRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGGAP*
Translation from 150 to 422
> LD07775.pep MSDEKKGGETEHINLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRAGLSM QVVRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGGAP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14461-PA | 91 | GF14461-PA | 1..89 | 1..89 | 475 | 100 | Plus |
Dana\GF12436-PA | 376 | GF12436-PA | 45..128 | 2..85 | 204 | 46.4 | Plus |
Dana\GF19440-PA | 90 | GF19440-PA | 2..79 | 11..88 | 183 | 41 | Plus |
Dana\GF22492-PA | 164 | GF22492-PA | 73..158 | 2..87 | 137 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23561-PA | 90 | GG23561-PA | 1..89 | 1..89 | 476 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13578-PA | 96 | GH13578-PA | 1..89 | 1..89 | 469 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
smt3-PB | 90 | CG4494-PB | 1..90 | 1..90 | 471 | 100 | Plus |
smt3-PA | 90 | CG4494-PA | 1..90 | 1..90 | 471 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24172-PA | 90 | GI24172-PA | 1..89 | 1..89 | 470 | 98.9 | Plus |
Dmoj\GI10913-PA | 101 | GI10913-PA | 1..88 | 1..89 | 446 | 96.6 | Plus |
Dmoj\GI19359-PA | 102 | GI19359-PA | 13..94 | 12..90 | 166 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25593-PA | 90 | GL25593-PA | 1..88 | 1..88 | 469 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18220-PA | 90 | GA18220-PA | 1..88 | 1..88 | 469 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13677-PA | 90 | GM13677-PA | 1..90 | 1..90 | 481 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22523-PA | 90 | GD22523-PA | 1..90 | 1..90 | 481 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21441-PA | 90 | GJ21441-PA | 1..89 | 1..89 | 470 | 98.9 | Plus |
Dvir\GJ18559-PA | 101 | GJ18559-PA | 1..87 | 1..88 | 442 | 96.6 | Plus |
Dvir\GJ19914-PA | 102 | GJ19914-PA | 12..89 | 12..89 | 177 | 42.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18100-PA | 96 | GK18100-PA | 1..89 | 1..89 | 463 | 97.8 | Plus |
Dwil\GK24974-PA | 92 | GK24974-PA | 1..87 | 1..88 | 447 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18385-PA | 90 | GE18385-PA | 1..89 | 1..89 | 476 | 100 | Plus |