Clone LD07917 Report

Search the DGRC for LD07917

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:79
Well:17
Vector:pBS SK-
Associated Gene/TranscriptCG1637-RC
Protein status:LD07917.pep: gold
Preliminary Size:1829
Sequenced Size:1720

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1637 2001-01-01 Release 2 assignment
CG1637 2002-05-30 Blastp of sequenced clone
CG1637 2003-01-01 Sim4 clustering to Release 3
CG1637 2008-04-29 Release 5.5 accounting
CG1637 2008-08-15 Release 5.9 accounting
CG1637 2008-12-18 5.12 accounting

Clone Sequence Records

LD07917.complete Sequence

1720 bp (1720 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118497

> LD07917.complete
TCACACTGCACCCGGATTGTTTTTGTTGTGGCTGCGCTTATAAATTGCTG
GATATTTCCATATTAGTGCTCATTTTTTGTTGTTCCCGCAAGCGAATTTG
TCGATTCCCCCGTTTAACTCCAACGACTCCCCGAGCCAAGTGTCCCCACT
TTGACAACGACGCAATTGTGATTTGGCAATGTTTTTGCTGACTGCGTTAC
TGTGCAACAACAAACACAAGTAAATACAAAACGGTAAAAATGCAGAGACT
GCAATTCGCTCTGCTAGCGTCGCTGCTCCTGCTGGTGCTGCTTCTTCCGG
GGATTAGGAGCACTCCCATCGACCAGGACGTCGACATTGTTCACTATCAG
CCGGAGCAAGTGCATCTGTCCTTTGGAGACAATCTTCGTGATATTGTGGT
GACATGGTCGACTCGAAGTTCCCCCAACGCCTCGGTGGTTAAATTCTCGC
GGAACTATCTAAAAGACGAGCCGATAATGGTGAACGGCACCTGGCAGCGA
TTCGTCGATGGTGGAAAGAAGGCTCGCACTCAGTACATACACAATGTGGA
ACTGAAGGATCTGGAGCCGGACACGCGGTACGAGTACAGCTGCGGCAGTC
CGCTCGGTTGGTCGGCGGTGTTCAATTTCAAGACGCCACCGGCGGGTGAG
AAGTGGTCGCCCTCGTTGGCCATTTTCGGTGACATGGGCAACGAGAATGC
CCAGTCGATGGGCCGACTACAGCAGGACACTGAGCGAGGCATGTACGATG
CCATCATCCATGTGGGTGACTTTGCCTACGACATGGACACCTCCAACGCT
GCCGTGGGTGATGCATTCATGCGCCAGATCGAGTCGGTGGCTGCCTATGT
GCCCTACATGGTTTGTCCGGGCAATCACGAGGAGAAGTACAACTTCTCCA
ACTATCGCGCCCGCTTCAATATGCCCGGCGAAACGGACAGCTTGTGGTAC
AGCTTCAACTTGGGACCCGTGCACTTTGTCTCCTTCTCCACGGAGGTCTA
CTACTTCCTCAGCTATGGCTTCAAGTTGCTGACCAAGCAATTCGAGTGGC
TGGAACGTGACCTGGCCGAGGCCAATCTGCCCGAGAATCGGGCCAAACGT
CCGTGGATCATCACCTACGGTCATCGACCGATGTACTGCAGCGACGACAA
GGAGTACGATTGCAATAGCCAACTGGAGACGTACATTCGCCAGGGTCTGC
CCATGCTCAAGTGGTTCGGCCTGGAGGATCTGTTCTACAAGCACGGCGTC
GACGTGGAGATCTTTGCGCATGAACACTTCTACACTCGCCTGTGGCCAAT
CTACGACTACAAGGTGTACAATGGCAGTGCCGAGGCGCCATACACTAATC
CCAAGGCGCCCATCCAGATCATCACGGGTTCCGCCGGCTGCAAGGAGGAG
CGCGAGCCCTTCTCCAACGATTTGCCCATCTGGAATGCCTACCATAGCAA
TGATTACGGATACACCCGCTTGAAGGCACATAATGGCACGCATCTTCACT
TCGAGCAGGTGTCCGATGACCAGAACGGCGCCATTGTCGACTCCTTCTGG
GTGATCAAGGACAAGCATGGCGCATATCCATCGCCCCAATGAGATTACAT
GCATATATAAATATATACTTTCTAGTTAAATGACGATTATGATAATGTAT
TTTTTTGTAGCATCTTTTAATAAAAATAAAGTTAGAAAAAAATATATCGA
TGAAAAAAAAAAAAAAAAAA

LD07917.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1637-RC 1837 CG1637-RC 124..1837 1..1714 8555 99.9 Plus
CG1637-RB 2319 CG1637-RB 124..502 1..379 1895 100 Plus
CG1637.a 2208 CG1637.a 16..393 1..378 1890 100 Plus
CG1637-RB 2319 CG1637-RB 807..1129 654..976 760 82.3 Plus
CG1637.a 2208 CG1637.a 702..1024 654..976 760 82.3 Plus
CG1637-RB 2319 CG1637-RB 1215..1300 1062..1147 280 88.3 Plus
CG1637.a 2208 CG1637.a 1110..1195 1062..1147 280 88.3 Plus
CG1637-RB 2319 CG1637-RB 1626..1687 1473..1534 160 83.8 Plus
CG1637.a 2208 CG1637.a 1521..1582 1473..1534 160 83.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10762214..10762776 1452..890 2800 99.8 Minus
chrX 22417052 chrX 10762840..10763356 889..373 2570 99.8 Minus
chrX 22417052 chrX 10768725..10769102 378..1 1800 98.4 Minus
chrX 22417052 chrX 10761905..10762155 1702..1452 1255 100 Minus
chrX 22417052 chrX 10766553..10766787 888..654 560 82.6 Minus
chrX 22417052 chrX 10766224..10766481 1147..890 465 78.7 Minus
chrX 22417052 chrX 10763689..10763788 1570..1471 230 82 Minus
chrX 22417052 chrX 10764447..10764593 889..743 195 75.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10870903..10871465 1452..890 2815 100 Minus
X 23542271 X 10871529..10872045 889..373 2570 99.8 Minus
X 23542271 X 10877415..10877792 378..1 1890 100 Minus
X 23542271 X 10870582..10870844 1714..1452 1300 99.6 Minus
X 23542271 X 10875242..10875476 888..654 560 82.6 Minus
X 23542271 X 10874913..10875170 1147..890 465 78.7 Minus
X 23542271 X 10872378..10872477 1570..1471 230 82 Minus
X 23542271 X 10873136..10873282 889..743 195 75.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10879001..10879563 1452..890 2815 100 Minus
X 23527363 X 10879627..10880143 889..373 2570 99.8 Minus
X 23527363 X 10885513..10885890 378..1 1890 100 Minus
X 23527363 X 10878680..10878942 1714..1452 1300 99.6 Minus
X 23527363 X 10883340..10883574 888..654 560 82.5 Minus
X 23527363 X 10883011..10883096 1147..1062 280 88.3 Minus
X 23527363 X 10883182..10883268 976..890 210 82.7 Minus
X 23527363 X 10881335..10881380 788..743 185 93.4 Minus
X 23527363 X 10880516..10880575 1530..1471 180 86.6 Minus
X 23527363 X 10880893..10881000 1150..1043 165 76.8 Minus
X 23527363 X 10882624..10882685 1534..1473 160 83.8 Minus
Blast to na_te.dros performed on 2019-03-16 08:47:49 has no hits.

LD07917.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:48:56 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10768725..10769102 1..378 98   Minus
chrX 10761905..10762155 1452..1702 100 <- Minus
chrX 10762215..10762776 890..1451 99 <- Minus
chrX 10762840..10763350 379..889 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:40:49 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 1..1353 240..1592 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:37:05 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 1..1353 240..1592 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:57:10 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 1..1353 240..1592 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:28:42 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 1..1353 240..1592 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:50:51 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 1..1353 240..1592 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:09:26 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 16..1717 1..1702 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:37:05 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 16..1717 1..1702 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:57:10 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 7..1708 1..1702 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:28:42 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 16..1717 1..1702 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:50:51 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG1637-RC 7..1708 1..1702 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:48:56 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
X 10870594..10870844 1452..1702 100 <- Minus
X 10870904..10871465 890..1451 100 <- Minus
X 10871529..10872039 379..889 100 <- Minus
X 10877415..10877792 1..378 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:48:56 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
X 10870594..10870844 1452..1702 100 <- Minus
X 10870904..10871465 890..1451 100 <- Minus
X 10871529..10872039 379..889 100 <- Minus
X 10877415..10877792 1..378 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:48:56 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
X 10870594..10870844 1452..1702 100 <- Minus
X 10870904..10871465 890..1451 100 <- Minus
X 10871529..10872039 379..889 100 <- Minus
X 10877415..10877792 1..378 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:57:10 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10764627..10764877 1452..1702 100 <- Minus
arm_X 10764937..10765498 890..1451 100 <- Minus
arm_X 10765562..10766072 379..889 100 <- Minus
arm_X 10771448..10771825 1..378 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:01:16 Download gff for LD07917.complete
Subject Subject Range Query Range Percent Splice Strand
X 10878692..10878942 1452..1702 100 <- Minus
X 10879002..10879563 890..1451 100 <- Minus
X 10879627..10880137 379..889 100 <- Minus
X 10885513..10885890 1..378 100   Minus

LD07917.pep Sequence

Translation from 239 to 1591

> LD07917.pep
MQRLQFALLASLLLLVLLLPGIRSTPIDQDVDIVHYQPEQVHLSFGDNLR
DIVVTWSTRSSPNASVVKFSRNYLKDEPIMVNGTWQRFVDGGKKARTQYI
HNVELKDLEPDTRYEYSCGSPLGWSAVFNFKTPPAGEKWSPSLAIFGDMG
NENAQSMGRLQQDTERGMYDAIIHVGDFAYDMDTSNAAVGDAFMRQIESV
AAYVPYMVCPGNHEEKYNFSNYRARFNMPGETDSLWYSFNLGPVHFVSFS
TEVYYFLSYGFKLLTKQFEWLERDLAEANLPENRAKRPWIITYGHRPMYC
SDDKEYDCNSQLETYIRQGLPMLKWFGLEDLFYKHGVDVEIFAHEHFYTR
LWPIYDYKVYNGSAEAPYTNPKAPIQIITGSAGCKEEREPFSNDLPIWNA
YHSNDYGYTRLKAHNGTHLHFEQVSDDQNGAIVDSFWVIKDKHGAYPSPQ
*

LD07917.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20210-PA 411 GF20210-PA 9..411 48..450 1996 89.1 Plus
Dana\GF20208-PA 461 GF20208-PA 1..459 1..446 1493 60.7 Plus
Dana\GF20209-PA 404 GF20209-PA 2..400 47..446 1344 60 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18893-PA 459 GG18893-PA 1..459 1..450 1924 80.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24660-PA 404 GH24660-PA 2..403 45..446 1895 84.3 Plus
Dgri\GH24658-PA 430 GH24658-PA 6..429 29..449 1504 66 Plus
Dgri\GH24659-PA 412 GH24659-PA 8..402 51..446 1306 59.8 Plus
Dgri\GH24661-PA 228 GH24661-PA 1..218 228..446 797 64.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1637-PC 450 CG1637-PC 1..450 1..450 2457 100 Plus
CG1637-PB 458 CG1637-PB 1..456 1..446 1659 68.4 Plus
CG1637-PD 459 CG1637-PD 1..457 1..446 1657 68.5 Plus
CG1637-PE 453 CG1637-PE 1..446 1..448 1604 65.4 Plus
CG1637-PA 453 CG1637-PA 1..446 1..448 1604 65.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16123-PA 407 GI16123-PA 1..406 41..446 1861 81.5 Plus
Dmoj\GI16121-PA 456 GI16121-PA 15..453 9..446 1501 63.9 Plus
Dmoj\GI16122-PA 402 GI16122-PA 2..400 47..446 1347 61 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14294-PA 417 GL14294-PA 16..415 47..446 1957 87.2 Plus
Dper\GL14292-PA 462 GL14292-PA 33..458 29..446 1501 65.3 Plus
Dper\GL14293-PA 404 GL14293-PA 3..402 47..448 1340 60.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22739-PA 417 GA22739-PA 16..415 47..446 1963 87.5 Plus
Dpse\GA14064-PA 462 GA14064-PA 33..458 29..446 1501 65.3 Plus
Dpse\GA22738-PA 404 GA22738-PA 3..402 47..448 1323 59.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11279-PA 449 GM11279-PA 1..449 1..450 1904 81.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16010-PA 460 GD16010-PA 1..460 1..450 1942 82.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16402-PA 414 GJ16402-PA 14..413 47..446 1874 83.5 Plus
Dvir\GJ16400-PA 457 GJ16400-PA 35..454 27..446 1489 65.3 Plus
Dvir\GJ16401-PA 405 GJ16401-PA 4..402 47..446 1357 62 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25791-PA 407 GK25791-PA 12..406 48..442 1846 84.8 Plus
Dwil\GK25789-PA 454 GK25789-PA 13..451 19..446 1470 62.5 Plus
Dwil\GK25790-PA 410 GK25790-PA 7..407 44..446 1345 60.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17338-PA 409 GE17338-PA 6..409 47..450 2114 94.8 Plus
Dyak\GE17336-PA 459 GE17336-PA 1..457 1..446 1532 65.6 Plus
Dyak\GE17337-PA 417 GE17337-PA 14..414 46..448 1339 61 Plus

LD07917.hyp Sequence

Translation from 239 to 1591

> LD07917.hyp
MQRLQFALLASLLLLVLLLPGIRSTPIDQDVDIVHYQPEQVHLSFGDNLR
DIVVTWSTRSSPNASVVKFSRNYLKDEPIMVNGTWQRFVDGGKKARTQYI
HNVELKDLEPDTRYEYSCGSPLGWSAVFNFKTPPAGEKWSPSLAIFGDMG
NENAQSMGRLQQDTERGMYDAIIHVGDFAYDMDTSNAAVGDAFMRQIESV
AAYVPYMVCPGNHEEKYNFSNYRARFNMPGETDSLWYSFNLGPVHFVSFS
TEVYYFLSYGFKLLTKQFEWLERDLAEANLPENRAKRPWIITYGHRPMYC
SDDKEYDCNSQLETYIRQGLPMLKWFGLEDLFYKHGVDVEIFAHEHFYTR
LWPIYDYKVYNGSAEAPYTNPKAPIQIITGSAGCKEEREPFSNDLPIWNA
YHSNDYGYTRLKAHNGTHLHFEQVSDDQNGAIVDSFWVIKDKHGAYPSPQ
*

LD07917.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1637-PC 450 CG1637-PC 1..450 1..450 2457 100 Plus
CG1637-PB 458 CG1637-PB 1..456 1..446 1659 68.4 Plus
CG1637-PD 459 CG1637-PD 1..457 1..446 1657 68.5 Plus
CG1637-PE 453 CG1637-PE 1..446 1..448 1604 65.4 Plus
CG1637-PA 453 CG1637-PA 1..446 1..448 1604 65.4 Plus