Clone LD07988 Report

Search the DGRC for LD07988

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:79
Well:88
Vector:pBS SK-
Associated Gene/TranscriptCG8578-RA
Protein status:LD07988.pep: gold
Preliminary Size:1744
Sequenced Size:1614

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8578 2001-11-09 Blastp of sequenced clone
CG8578 2003-01-01 Sim4 clustering to Release 3
CG8578 2008-04-29 Release 5.5 accounting
CG8578 2008-08-15 Release 5.9 accounting
CG8578 2008-12-18 5.12 accounting

Clone Sequence Records

LD07988.complete Sequence

1614 bp (1614 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069374

> LD07988.complete
CTTTCGCTTAAGGTGTCTCTTAAAACTTTTTATGTCGTGCGATCGCTTGC
GATTAATATATAAAATATAGTTAAATTGAGCACAGATTCAATGGAAAGTA
TCAGCACCACAGGTCGGCGACGGAACAACATGCGAATCAATGCCGAAGAC
AATGCGCTGGATCAAATTACGAAAGAGGCGGAAGCGCGACTTGCTGCGCG
TCGACAGGCGCGCGCCGAAGCCCGCGAGATTCGCATGAGGGAGCTGGAGC
GGCAGCAGAAAGAGCAGGAGATCACCGCCGACCGGGTCTTCGACATGCAA
AACTCCACGGCAGTGGGCAGCGAAACTCTGTCGGCGCATCCCGTGCGCCT
CGCCTACGGCGGACTGTTAAACGTGACCCGTGCATCAGCATCCCGCCGCA
GCAGTGAGGACTCCGTGGAGGAGGAGGGCAGAAGTTTTCGCGACTTCAAG
CACGAGCTTAAGGATGTTGAGGAGCGGTTTCGCAAAGCCATGATAACGAA
CGCCCAGTTGGACAACGATCGCGCCTCGCAGGCCTACGAAGTCAAGCTAC
TGAAGGACAAATGCGAAATAATGGAAGAGTCGTATGCACAACTACAGCGC
GAGTTCAAGGAGAAGATGCGTGACTGCAATGCCCTCAAACGCAACCTGGA
TCGCGCCAATCTCGAGCTTAAGCTAGTACAAGGGCAGTTAAACGAGCGCG
ACTCGTTGATCGCCGAACAGGGCCTTCTAATTGTAGCAGTTGAAAATGCC
GATGGCAGCGATGCCAAGCGAGCTCTAGTGAGTGTCGAGAATGCCAAGGT
GCTGGCCTCCGTGCAGGGTTCTTTAGACGTTAGACTTAAAAAGTTCAGTG
ACGAGAAGCAGCGGCTGCTGGCGGAGGTGCAGAAGCTTCACGAACAACTT
GACGAGTATAAAAGTGATGGAATTTCCGGACGCCGCAGTCTTTCGCAAGG
TTCCTTCGGCGATGAGAATGATTACGAGGCCCAACGGGAAACAAACAAAA
TCATTTCAGACCATAAATATAAGCTGCAAAAGGCGGAACAGGAAATCGCC
AACCTACAGTCGAGCCTAGCGCGCTCCGAAACTCAAGTAATCCGATACAA
AAGCACCGCAGAAGCTGCCGAAAAGGCGGAGGCTGAGCTGAAGCTGGAGC
GCCGCAAGCTGCAACGCGAGCACCGGGAACTCTTGGAGAAGTTGGAGGAA
GCTGAAACGTCCAACAACCATTTGTTGAAACGCCTCGATAAGTTGAAAAA
CGCAAAGAGTGCCATTCTAAAGGACTTATGATCTAAGATGGGAAATGCAA
TCTCGCCAACCATTGAAGGATCGCACCCGATGACATAGGAAACGCAAGTA
CACGACATCATCAACACACAAATCAACATGCTGCAATTGAAATAGCACTT
CGGTAGCAATTTAATCGGTCTTAGTGGTAGCAAATCGATAATTTTTGAAG
GATAATCCAAAATACTCTACCTTAAAAATATATATATATATATATTTAAA
TTAAAATATAAACTAACTGGATAATAATTAACATAAATAATGTCTATATG
TGTATATTTAAAGCGCAAAATATAAGTAACAATTCAATTGGTTCAAAAAA
AAAAAAAAAAAAAA

LD07988.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-RA 1683 CG8578-RA 52..1646 1..1595 7975 100 Plus
CG8578.e 1611 CG8578.e 87..1611 71..1595 7625 100 Plus
CG8578.f 1554 CG8578.f 62..1554 103..1595 7465 100 Plus
CG8578.e 1611 CG8578.e 52..86 1..35 175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15737042..15737467 1169..1594 2130 100 Plus
chrX 22417052 chrX 15735823..15736188 461..826 1830 100 Plus
chrX 22417052 chrX 15735481..15735768 176..463 1440 100 Plus
chrX 22417052 chrX 15736798..15736982 986..1170 910 99.5 Plus
chrX 22417052 chrX 15736248..15736409 825..986 795 99.4 Plus
chrX 22417052 chrX 15735168..15735310 36..178 715 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15847201..15847627 1169..1595 2135 100 Plus
X 23542271 X 15845982..15846347 461..826 1830 100 Plus
X 23542271 X 15845640..15845927 176..463 1440 100 Plus
X 23542271 X 15846957..15847141 986..1170 925 100 Plus
X 23542271 X 15846407..15846568 825..986 810 100 Plus
X 23542271 X 15845327..15845469 36..178 715 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15855299..15855725 1169..1595 2135 100 Plus
X 23527363 X 15854080..15854445 461..826 1830 100 Plus
X 23527363 X 15853738..15854025 176..463 1440 100 Plus
X 23527363 X 15855055..15855239 986..1170 925 100 Plus
X 23527363 X 15854505..15854666 825..986 810 100 Plus
X 23527363 X 15853425..15853567 36..178 715 100 Plus
X 23527363 X 15852595..15852629 1..35 175 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:19:34 has no hits.

LD07988.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:20:25 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15734337..15734371 1..35 100 -> Plus
chrX 15735168..15735309 36..177 100 -> Plus
chrX 15735483..15735767 178..462 100 -> Plus
chrX 15735825..15736188 463..826 100 -> Plus
chrX 15736250..15736408 827..985 99 -> Plus
chrX 15736798..15736982 986..1170 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:40:54 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 1..1191 91..1281 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:15 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 1..1191 91..1281 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:00:56 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 1..1191 91..1281 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:52 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 1..1191 91..1281 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:28:01 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 1..1191 91..1281 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:08:08 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 1..1594 1..1594 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:14 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 1..1594 1..1594 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:00:56 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 1..1594 1..1594 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:52 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 1..1594 1..1594 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:28:01 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 22..1615 1..1594 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:25 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
X 15845327..15845468 36..177 100 -> Plus
X 15845642..15845926 178..462 100 -> Plus
X 15844497..15844531 1..35 100 -> Plus
X 15845984..15846347 463..826 100 -> Plus
X 15846409..15846567 827..985 100 -> Plus
X 15846957..15847141 986..1170 100 -> Plus
X 15847203..15847626 1171..1594 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:25 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
X 15845327..15845468 36..177 100 -> Plus
X 15845642..15845926 178..462 100 -> Plus
X 15844497..15844531 1..35 100 -> Plus
X 15845984..15846347 463..826 100 -> Plus
X 15846409..15846567 827..985 100 -> Plus
X 15846957..15847141 986..1170 100 -> Plus
X 15847203..15847626 1171..1594 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:25 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
X 15845327..15845468 36..177 100 -> Plus
X 15845642..15845926 178..462 100 -> Plus
X 15844497..15844531 1..35 100 -> Plus
X 15845984..15846347 463..826 100 -> Plus
X 15846409..15846567 827..985 100 -> Plus
X 15846957..15847141 986..1170 100 -> Plus
X 15847203..15847626 1171..1594 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:00:56 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15740990..15741174 986..1170 100 -> Plus
arm_X 15738530..15738564 1..35 100 -> Plus
arm_X 15739360..15739501 36..177 100 -> Plus
arm_X 15739675..15739959 178..462 100 -> Plus
arm_X 15740017..15740380 463..826 100 -> Plus
arm_X 15740442..15740600 827..985 100 -> Plus
arm_X 15741236..15741659 1171..1594 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:13 Download gff for LD07988.complete
Subject Subject Range Query Range Percent Splice Strand
X 15853740..15854024 178..462 100 -> Plus
X 15854082..15854445 463..826 100 -> Plus
X 15854507..15854665 827..985 100 -> Plus
X 15855055..15855239 986..1170 100 -> Plus
X 15855301..15855724 1171..1594 100   Plus
X 15852595..15852629 1..35 100 -> Plus
X 15853425..15853566 36..177 100 -> Plus

LD07988.hyp Sequence

Translation from 90 to 1280

> LD07988.hyp
MESISTTGRRRNNMRINAEDNALDQITKEAEARLAARRQARAEAREIRMR
ELERQQKEQEITADRVFDMQNSTAVGSETLSAHPVRLAYGGLLNVTRASA
SRRSSEDSVEEEGRSFRDFKHELKDVEERFRKAMITNAQLDNDRASQAYE
VKLLKDKCEIMEESYAQLQREFKEKMRDCNALKRNLDRANLELKLVQGQL
NERDSLIAEQGLLIVAVENADGSDAKRALVSVENAKVLASVQGSLDVRLK
KFSDEKQRLLAEVQKLHEQLDEYKSDGISGRRSLSQGSFGDENDYEAQRE
TNKIISDHKYKLQKAEQEIANLQSSLARSETQVIRYKSTAEAAEKAEAEL
KLERRKLQREHRELLEKLEEAETSNNHLLKRLDKLKNAKSAILKDL*

LD07988.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-PC 396 CG8578-PC 1..396 1..396 1936 100 Plus
CG8578-PB 396 CG8578-PB 1..396 1..396 1936 100 Plus
CG8578-PA 396 CG8578-PA 1..396 1..396 1936 100 Plus
CLIP-190-PN 1598 CG5020-PN 845..1246 27..392 161 22.6 Plus
CLIP-190-PR 1601 CG5020-PR 848..1249 27..392 161 22.6 Plus

LD07988.pep Sequence

Translation from 90 to 1280

> LD07988.pep
MESISTTGRRRNNMRINAEDNALDQITKEAEARLAARRQARAEAREIRMR
ELERQQKEQEITADRVFDMQNSTAVGSETLSAHPVRLAYGGLLNVTRASA
SRRSSEDSVEEEGRSFRDFKHELKDVEERFRKAMITNAQLDNDRASQAYE
VKLLKDKCEIMEESYAQLQREFKEKMRDCNALKRNLDRANLELKLVQGQL
NERDSLIAEQGLLIVAVENADGSDAKRALVSVENAKVLASVQGSLDVRLK
KFSDEKQRLLAEVQKLHEQLDEYKSDGISGRRSLSQGSFGDENDYEAQRE
TNKIISDHKYKLQKAEQEIANLQSSLARSETQVIRYKSTAEAAEKAEAEL
KLERRKLQREHRELLEKLEEAETSNNHLLKRLDKLKNAKSAILKDL*

LD07988.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17405-PA 391 GF17405-PA 1..391 4..396 1483 79.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17921-PA 396 GG17921-PA 1..396 1..396 2015 99.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12175-PA 397 GH12175-PA 1..397 1..396 1451 78.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-PC 396 CG8578-PC 1..396 1..396 1936 100 Plus
CG8578-PB 396 CG8578-PB 1..396 1..396 1936 100 Plus
CG8578-PA 396 CG8578-PA 1..396 1..396 1936 100 Plus
CLIP-190-PN 1598 CG5020-PN 845..1246 27..392 161 22.6 Plus
CLIP-190-PR 1601 CG5020-PR 848..1249 27..392 161 22.6 Plus
CLIP-190-PP 1623 CG5020-PP 870..1271 27..392 161 22.6 Plus
CLIP-190-PC 1652 CG5020-PC 899..1300 27..392 161 22.6 Plus
CLIP-190-PS 1653 CG5020-PS 900..1301 27..392 161 22.6 Plus
CLIP-190-PM 1668 CG5020-PM 915..1316 27..392 161 22.6 Plus
CLIP-190-PB 1689 CG5020-PB 936..1337 27..392 161 22.6 Plus
CLIP-190-PA 1690 CG5020-PA 937..1338 27..392 161 22.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14176-PA 397 GI14176-PA 1..397 1..396 1391 76.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11920-PA 349 GL11920-PA 1..349 49..396 1501 83.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29177-PA 240 GA29177-PA 18..225 47..253 928 85.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22589-PA 396 GM22589-PA 1..396 1..396 2022 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24680-PA 396 GD24680-PA 1..396 1..396 2022 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18437-PA 396 GJ18437-PA 7..396 8..396 1402 77.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17757-PA 468 GK17757-PA 118..468 47..396 1424 83.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17228-PA 396 GE17228-PA 1..396 1..396 2016 99.5 Plus