Clone LD08056 Report

Search the DGRC for LD08056

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:80
Well:56
Vector:pBS SK-
Associated Gene/Transcriptsip2-RB
Protein status:LD08056.pep: gold
Sequenced Size:2178

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
sip2 2008-04-29 Release 5.5 accounting
sip2 2008-04-29 Picked prior to 5.5
sip2 2008-08-15 Release 5.9 accounting
sip2 2008-12-18 5.12 accounting

Clone Sequence Records

LD08056.complete Sequence

2178 bp assembled on 2007-11-15

GenBank Submission: BT031251

> LD08056.complete
AAGAAATCCATGAAATATTTGCGTGTGCGCCTTGAAGATTAAGGAAGATC
TGCGTGAATACTATTGCCAGAAGTTTTGCACCCAGGACACACGCACACTC
GCACACTCACGATGTCTGGCCTCAAGAAATTCCAAAACACTGAGGAATGG
CGTCAGAAACTCCGTCAGTTTCTAATGACCGAGCGCTTGCCGAAAAAGCC
CGTGAAAATGGACGAAACGAAGGATATGCGCTATAGTTTGGAGATCGACG
AGGATTTGAGGAGACCCTTGGAGGCGCGGGCCAAGAAAGTTCTGGCCGTT
AATTCTGCCAGTCAAAGGACTGTTAATCTCGGCGAGGATACTATGTACGA
GGCAGGTGACTTGGAGCACTTGGACGATGGCGATGATAGCTTCAGTGCCT
TTGAGCGCATGTGCGACAAAACCGGTTCCGATCCGGATAGCACTCTTTTC
CAGTACCTGCACAGCGAGGACCGGAGTCAGGTGATGGCCAGGGCTAGGGA
TCATAGCACCGACGATCAGAAAGAGATCGATGCACTGCGTCGCATGCTAG
AGGCAGTGGGTACAGAAGACGATCTATTGGAGAACGAAAGTCCCGTCAAG
GGGGCGGAGTGCACTCACCTGGAGGACATTGAGGCGCCGTCGCGCTTTTG
GGACAACACCCTGGCCGGAATGGACGAGACCTCATCCGACTCTGGGCTGA
CTCCTAAAGCATTGACCAAGGTTTCGCCTGTCAAAATGGTGGGGCTGCTT
CGCCCCTCAACCATCATCGAAGACAGCGAACTGGAGTCGTCTGATGTGTC
TTCACACACAAGCTTCCAAAGCGCTCGCACCCTAAAGACAAATGCATCTA
GTTCTTACGAAACAGCCACGGATACTTCCCTCAGTGGAACGCTCCTAAAC
GTCGACGAATTGTTTTACGCCGCAATTGCCAAGGCCAAGCCACCAGGAAT
GTCCAAGGGAGAGGAGCTGGAGCTCTTAAGCGATCTTCATGGCAGTCTTA
GAGAGCTGGCCTCACTTCCGAAGGATGAGGTCGAGGAGGAAGAGGACGAT
ATAGAGGATACAATAATCGAGCTATCCTCTTCTGACGATGAAGAAGTGCA
GCTAGTTCCAGAAGTAAAACAAGAAGACACGTCCCGTGTGTCCTCAGTCC
ACGGAAAAGATCACACTGAGCAGAAACCAGCGGAGAAGAGCGTTGAAAAT
AAGGAAAATTCGTTGCATTTCAATGATACCATGGAAGAAATGGAGTACAT
GATGCAAAAGGGTATGGAGTACATGGCAGGTGGGGCTCCTTCAGTCGCCG
CAGTCAAGGCAGATTGCCCTGTGCTGCCCAAGACCAAACAAAGCACGTTC
GTTGTTTCACCGAAGCCGGAACCAAAATCACCGGCTGTAGCCTTTTTGCA
GCCATCAATTCCGCTGCGGTCATCTAATCAGCCACAAACAGTTGTAGGTT
CATCTAGCACGGGTAGAAAGCCGCTCAATGTCGGCCTCACCATGGAGTGG
ACCAAAAAGAAATTTTTCAGTGCAGCCTCTGGTATTCCTCAGCGTCGCCA
AAATCAGATAAAGCAGCCATACGCCAACATAGTCAGTCCCATACGCACCT
ACACCCAGAAGTCTGGTACTGCTCCGCTAATGAGTACATTCCGTCCAACG
AGTTCTGATATGCTATCTACACTGGCCATCAGTGAGTTGGAGCAGGAGTC
TCGCTTGTGTCATCCTAAAGCACTTTTCGCAACAAAGGACGAAACACCCA
AGTCCAGTGAAGCGGAATCTTTAATTATCAATGGAATCGATTCAGCCGCT
GATCTGCTTCCCAAAAAGGCTTACATATCTTCCGAAATCAAGCATGTGGT
TGATGAACGAACTCCTTTGCCCATGCCGAAGGTACCTCAAATTCAAAAAT
ACCTCAACTCCGCCGTGGAGCCTACTGTTATGCGCCACGATGGCAAAATG
AAAATGCCCGGCGAGGCAGTCCGCAATCCGTCGTCTTCGCATATCCCACG
ACGCGCCAATCACAGCCTGGCTGATCTGTCGCTCGCCTCAGGCGACGTGT
CCTTATACACAATAAGAGATGCCCAAAAGTTTTAAGGCCCATAAAAGTAC
TTCACGCTCCTTGACTAAATATTGCAACGATAATAAATGTATTGTGTAAC
TAGTGCTAGTAAAAAAAAAAAAAAAAAA

LD08056.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
sip2_CG9188-RB 2303 sip2_CG9188-RB 142..2303 1..2162 10810 100 Plus
sip2_CG9188-RA 2288 sip2_CG9188-RA 268..2246 185..2163 9895 100 Plus
sip2_CG9188.a 2124 sip2_CG9188.a 149..2124 185..2160 9880 100 Plus
sip2_CG9188.a 2124 sip2_CG9188.a 63..139 1..77 385 100 Plus
sip2_CG9188-RA 2288 sip2_CG9188-RA 196..268 1..73 365 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6960977..6962639 1847..185 8300 99.9 Minus
chr2L 23010047 chr2L 6960600..6960914 2160..1846 1575 100 Minus
chr2L 23010047 chr2L 6962828..6962941 185..72 570 100 Minus
chr2L 23010047 chr2L 6963023..6963095 73..1 365 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6961893..6963555 1847..185 8315 100 Minus
2L 23513712 2L 6961513..6961830 2163..1846 1590 100 Minus
2L 23513712 2L 6963744..6963857 185..72 570 100 Minus
2L 23513712 2L 6963939..6964011 73..1 365 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6961893..6963555 1847..185 8315 100 Minus
2L 23513712 2L 6961513..6961830 2163..1846 1590 100 Minus
2L 23513712 2L 6963744..6963857 185..72 570 100 Minus
2L 23513712 2L 6963939..6964011 73..1 365 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:35:13 has no hits.

LD08056.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:36:05 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6960600..6960914 1846..2160 100 <- Minus
chr2L 6960979..6962638 186..1845 99 <- Minus
chr2L 6962828..6962939 74..185 100 <- Minus
chr2L 6963023..6963095 1..73 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:40:58 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RB 1..1974 112..2085 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:03:57 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RB 1..1974 112..2085 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:49:22 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RB 1..1974 112..2085 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:49:18 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RB 1..1974 112..2085 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:49:52 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RB 1..1974 112..2085 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:54:54 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RB 63..2222 1..2160 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:03:57 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RB 63..2222 1..2160 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:49:22 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RB 64..2223 1..2160 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:49:19 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RB 63..2222 1..2160 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:49:52 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
sip2-RB 64..2223 1..2160 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:05 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6961516..6961830 1846..2160 100 <- Minus
2L 6961895..6963554 186..1845 100 <- Minus
2L 6963744..6963855 74..185 100 <- Minus
2L 6963939..6964011 1..73 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:05 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6961516..6961830 1846..2160 100 <- Minus
2L 6961895..6963554 186..1845 100 <- Minus
2L 6963744..6963855 74..185 100 <- Minus
2L 6963939..6964011 1..73 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:05 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6961516..6961830 1846..2160 100 <- Minus
2L 6961895..6963554 186..1845 100 <- Minus
2L 6963744..6963855 74..185 100 <- Minus
2L 6963939..6964011 1..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:49:22 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6961516..6961830 1846..2160 100 <- Minus
arm_2L 6961895..6963554 186..1845 100 <- Minus
arm_2L 6963744..6963855 74..185 100 <- Minus
arm_2L 6963939..6964011 1..73 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:55:59 Download gff for LD08056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6961516..6961830 1846..2160 100 <- Minus
2L 6961895..6963554 186..1845 100 <- Minus
2L 6963744..6963855 74..185 100 <- Minus
2L 6963939..6964011 1..73 100   Minus

LD08056.pep Sequence

Translation from 111 to 2084

> LD08056.pep
MSGLKKFQNTEEWRQKLRQFLMTERLPKKPVKMDETKDMRYSLEIDEDLR
RPLEARAKKVLAVNSASQRTVNLGEDTMYEAGDLEHLDDGDDSFSAFERM
CDKTGSDPDSTLFQYLHSEDRSQVMARARDHSTDDQKEIDALRRMLEAVG
TEDDLLENESPVKGAECTHLEDIEAPSRFWDNTLAGMDETSSDSGLTPKA
LTKVSPVKMVGLLRPSTIIEDSELESSDVSSHTSFQSARTLKTNASSSYE
TATDTSLSGTLLNVDELFYAAIAKAKPPGMSKGEELELLSDLHGSLRELA
SLPKDEVEEEEDDIEDTIIELSSSDDEEVQLVPEVKQEDTSRVSSVHGKD
HTEQKPAEKSVENKENSLHFNDTMEEMEYMMQKGMEYMAGGAPSVAAVKA
DCPVLPKTKQSTFVVSPKPEPKSPAVAFLQPSIPLRSSNQPQTVVGSSST
GRKPLNVGLTMEWTKKKFFSAASGIPQRRQNQIKQPYANIVSPIRTYTQK
SGTAPLMSTFRPTSSDMLSTLAISELEQESRLCHPKALFATKDETPKSSE
AESLIINGIDSAADLLPKKAYISSEIKHVVDERTPLPMPKVPQIQKYLNS
AVEPTVMRHDGKMKMPGEAVRNPSSSHIPRRANHSLADLSLASGDVSLYT
IRDAQKF*

LD08056.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14462-PA 669 GF14462-PA 1..669 1..657 2210 67.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23562-PA 655 GG23562-PA 1..655 1..657 2985 88.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13579-PA 688 GH13579-PA 1..688 1..657 1183 44.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
sip2-PB 657 CG9188-PB 1..657 1..657 3335 100 Plus
sip2-PC 640 CG9188-PC 4..640 21..657 3210 99.4 Plus
sip2-PE 625 CG9188-PE 1..625 33..657 3167 100 Plus
sip2-PD 625 CG9188-PD 1..625 33..657 3167 100 Plus
sip2-PA 625 CG9188-PA 1..625 33..657 3167 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24183-PA 648 GI24183-PA 1..648 1..657 1067 43.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25594-PA 641 GL25594-PA 1..638 1..657 1771 59.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21599-PA 641 GA21599-PA 1..638 1..657 1769 59.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13688-PA 638 GM13688-PA 4..638 21..657 3095 95 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21452-PA 666 GJ21452-PA 1..666 1..657 1345 47.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18101-PA 669 GK18101-PA 1..669 1..657 1108 42.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\sip2-PA 655 GE18386-PA 1..655 1..657 2922 86.3 Plus

LD08056.hyp Sequence

Translation from 111 to 2084

> LD08056.hyp
MSGLKKFQNTEEWRQKLRQFLMTERLPKKPVKMDETKDMRYSLEIDEDLR
RPLEARAKKVLAVNSASQRTVNLGEDTMYEAGDLEHLDDGDDSFSAFERM
CDKTGSDPDSTLFQYLHSEDRSQVMARARDHSTDDQKEIDALRRMLEAVG
TEDDLLENESPVKGAECTHLEDIEAPSRFWDNTLAGMDETSSDSGLTPKA
LTKVSPVKMVGLLRPSTIIEDSELESSDVSSHTSFQSARTLKTNASSSYE
TATDTSLSGTLLNVDELFYAAIAKAKPPGMSKGEELELLSDLHGSLRELA
SLPKDEVEEEEDDIEDTIIELSSSDDEEVQLVPEVKQEDTSRVSSVHGKD
HTEQKPAEKSVENKENSLHFNDTMEEMEYMMQKGMEYMAGGAPSVAAVKA
DCPVLPKTKQSTFVVSPKPEPKSPAVAFLQPSIPLRSSNQPQTVVGSSST
GRKPLNVGLTMEWTKKKFFSAASGIPQRRQNQIKQPYANIVSPIRTYTQK
SGTAPLMSTFRPTSSDMLSTLAISELEQESRLCHPKALFATKDETPKSSE
AESLIINGIDSAADLLPKKAYISSEIKHVVDERTPLPMPKVPQIQKYLNS
AVEPTVMRHDGKMKMPGEAVRNPSSSHIPRRANHSLADLSLASGDVSLYT
IRDAQKF*

LD08056.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
sip2-PB 657 CG9188-PB 1..657 1..657 3335 100 Plus
sip2-PC 640 CG9188-PC 4..640 21..657 3210 99.4 Plus
sip2-PE 625 CG9188-PE 1..625 33..657 3167 100 Plus
sip2-PD 625 CG9188-PD 1..625 33..657 3167 100 Plus
sip2-PA 625 CG9188-PA 1..625 33..657 3167 100 Plus