Clone LD08195 Report

Search the DGRC for LD08195

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:81
Well:95
Vector:pBS SK-
Associated Gene/TranscriptUnc-76-RA
Protein status:LD08195.pep: gold
Preliminary Size:2908
Sequenced Size:2963

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3981 2001-11-09 Blastp of sequenced clone
CG3981 2003-01-01 Sim4 clustering to Release 3
Unc-76 2008-04-29 Release 5.5 accounting
Unc-76 2008-08-15 Release 5.9 accounting
Unc-76 2008-12-18 5.12 accounting

Clone Sequence Records

LD08195.complete Sequence

2963 bp (2963 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069376

> LD08195.complete
CGGTTCGCTGGCTGGTCGCAGAAACGCAAATTGTAGAAAGAAAACATTAT
AATCAGCCGCGTCTAAGTGCAAGTGTGATTTATTTCTTTTTTGTTTGGTG
TTTAGTGTGCTCGTGAGCAGATCAGTGGATCAAACAAACAGCCAGAAAAT
CGAGCGCTGGGCAAGCGGAATAAATCCAATTGGAATTGTCCGAACCGCAG
TTTTACGGAGTCGAGTGTTCCGTGTTTCGTATTCCGGGGCATTTTCCCCG
CCGAAAGCCCCGCTCAACCCCCCAAGCAAACAGCCGAATTAGGGGTTGCA
AAGTTTTTGCAGCCAGCCCGGAAAAGTCAGAGGAACTTGTTTTCTAAGGG
AAGAAAAGGGAAGCACGCAAGCGACGACTGCCCCCAAAGACCAAACGGAA
TCGGAGTCTGAATCGGAATCGGAAGGGGACTCCGCCGAATCCTTGAGAGA
ATCTTTTGCGCGTGCCATGCGTGACCTCGGCACCAAAATGGCCGAGCTAA
AATTCGAGGCTCCATTGGCAAAGTTCGAGGAAACGGACGAGTGGGGCGGC
TGCGACTTCATCTCGAGTCAGAATGCCATAAACGACACGCTCAACCTGAA
TCTGAAGGACTCCTCCGCCGGCGGCAAGCCGGATGCCACCAAGCTGCGGC
TCCTAGAGGATGCTGTACGCGATGCGCACGTGAGCAAGAACGGAGGAGGA
GTAGTGGGAGGAGGAGCTGGCTCCATTAGCCCCAATTGCAACACGCTCCA
GGGTGGGTCGCTTATTGAAATCGGCCTGTCCGATGTGGGATTGGTGCCGG
GCGAGGGAGCCGGCGTTGGTCTGGACGGTCTGGAGAAGCGCTCCCTGGCC
GTCGGCGACCATGTGGACAACTTCACGGAGACCTTCGGCGGAAGTCTGGA
GGATCTGGTCAATACGTTCGACGAAAAGATAACCAAGTGTTTCGGCAACT
ACGAAGAGAACGTCGAGGAGCTGGCTCCGGTGCAGGTGCGCAGCCAGGAG
GAGATCATGAACGAATGCCAAATGTGGTGGACCATCACAGGAAACTTTGG
CAACATTCTGCCCATCGACTGGTCCAAGTCGTACACCCGTCAGATGCACA
TGCCCACACTGAATCTGGGCCAGAACCACACGAAGCAGCAGCAGCAGAAT
CGCAACCAGCAGCAGCAGTTGCACAACCAGAGCCATCAGGCGTATCCACA
CACCAACGGTTTGGGATCCGGATCCGGATCCGGCCTGGATGCCCAGACTC
CGGGCGATGAGTTCAACGATCTGACCAGTGAGGACGAGGCGGTGGCCAAC
GATTTGGACATGCACGCCCTCATCCTTAACGGCTTGAACGGTGACATGGA
CGACCAGCCGATTAAGACGGTAGAGGAGGTGATCAAGGAGATCGACGACA
TCATGGACGAGGCCGAGAGCCCGCTGGACGAGCCGGAGACCTGCGATTCG
GAGGTGATCGAGAAGGCGCGAGAGGTGCTGGGCGCCCCCCTCTATGCGGA
AAAACTGCAATATCTGACCACGACACAGCTGAACGAGCTGTACATGGAGA
TGGAGGTGCTGATCCAGGAGCTGAGCGAGACGTTGATCAACGAGCTGGCC
CTGCGCGACGAGCTGGAGTTCGAGAAGGAGCTGAAGAACTCGTTCATCTC
TCTGCTCCTCGCCGTTCAGAACAAAAGGCGGCAGTACCATGTGGAGAAGA
AGCGCGGCAAGTTCCAGGGTCCCGAGCCCAAGTACTTGACCACAGTCATT
CCGTATCACCTGGAGAACGGCACGCCCAACAATCAGTCTCTGCAGGTCCT
GATCAAGATTCTCAAGGCCATCAACGAGGACAGCCCGACGGTTCCGGCCC
TCCTTACGGACTACATCCTGAAGGTGCTCTGCCCTACATAAGCGCCGCAA
GCGGTAGTCGCCGAGGAGCAGGAACCCCAGCTGTCGCTCCATCTCTCTGT
CTGTGTTTATACAATTATACAACTTGCATATACACACCGAACACACCACA
CATAATTTAATGATTAGTTCGTACTTTAAATTATTGTTTAAATGCAATCC
GTGTACTCTCCGCGGAGAAGAAGATTTGCCGCATAAAGAGAGGACTCTAG
TGATTCGTCTGTCGAATATGAGGCACCCAAAGTGGGGTCTTCTTCTCAAC
GGAGTGCTTTTCCCGGCCGATTCGACCGACAGAACAAAATATGCAACAAA
ACATACATGCAATACACATACATATATAGACACATATATATATATATAAA
CCGAAAAATTTACCGAGAGCGCGCTCTACGAACTCAGCCAGTCCTCCCAT
GGCAATAATACTCAATTCTCTCCGCCGCCTCTCTTTCTCTTTAAGGAGCA
TTCGTATTGTTAAAGAGCCGACTCCAACTAAGCTTAAAATACATACATAC
ATATATGGTAAATGCATGTGGGCCAGTTGCAAGTCCGCCTGCCGGTGCAG
CTTCAATTTTTTCGTCTATATGTGAAATATGCAGATCTAAATCGATACAC
GCTTGCATTATGTTCGCCCAGCTATCTGCGATCGAACGGACAGCCAATCA
CTAGGTTTTACAATAAGGATCTTATCTTGTATGTAATATATAATCTGATT
ATAAGAGGTGTGTGGCCTGCAGTCCCTGGAAAATCCGCCGTTTCGAAATG
TGTTCCGAGTGCAATTTACAAAAATATGATTTGAGATGGCATCAGAATCA
GACTCAGAATCGGAAAATCAGAATTAGTTGCAGCAATTGTTTTCGCATCG
CTTTAAGTTTACGACGCCTAATTTACTCATTTTTTTATTGTTTACGAGGC
CATAAAACGCGTTCTATTTTGTTCAAAACAATTGTTTAATGTAAATGGAG
GAAACACAAATTTAATTTTAATTTGCATAGAAAACGCTGTGTTATTTACT
TTTACCAAACAAGCATAAATAAAACGCTAATGATAATGCTAAAAAAAAAA
AAAAAAAAAAAAA

LD08195.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Unc-76.b 3922 Unc-76.b 127..3068 1..2942 14710 100 Plus
Unc-76.a 3911 Unc-76.a 127..3068 1..2942 14710 100 Plus
Unc-76-RB 3100 Unc-76-RB 127..3068 1..2942 14710 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1985899..1987030 1809..2940 5630 99.8 Plus
chrX 22417052 chrX 1974554..1975573 1..1020 5100 100 Plus
chrX 22417052 chrX 1984906..1985387 1021..1502 2395 99.8 Plus
chrX 22417052 chrX 1985455..1985672 1503..1720 1075 99.5 Plus
chrX 22417052 chrX 1985738..1985828 1718..1808 455 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2091962..2093095 1809..2942 5670 100 Plus
X 23542271 X 2080640..2081659 1..1020 5100 100 Plus
X 23542271 X 2090969..2091450 1021..1502 2410 100 Plus
X 23542271 X 2091518..2091735 1503..1720 1090 100 Plus
X 23542271 X 2091801..2091891 1718..1808 455 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2100060..2101193 1809..2942 5670 100 Plus
X 23527363 X 2088738..2089757 1..1020 5100 100 Plus
X 23527363 X 2099067..2099548 1021..1502 2410 100 Plus
X 23527363 X 2099616..2099833 1503..1720 1090 100 Plus
X 23527363 X 2099899..2099989 1718..1808 455 100 Plus
Blast to na_te.dros performed 2019-03-16 10:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 4389..4496 2386..2492 123 58.3 Plus
Dbuz\BuT2 2775 Dbuz\BuT2 BUT2 2775bp 2142..2246 2805..2911 116 59.3 Plus

LD08195.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:15:57 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1974554..1975573 1..1020 100 -> Plus
chrX 1984906..1985387 1021..1502 99 -> Plus
chrX 1985455..1985670 1503..1718 99 -> Plus
chrX 1985739..1985828 1719..1808 100 -> Plus
chrX 1985899..1987030 1809..2940 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:50:06 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RA 1..1425 467..1891 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:55 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RA 1..1425 467..1891 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:57 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RB 1..1425 467..1891 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:31 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RA 1..1425 467..1891 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:03 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RB 1..1425 467..1891 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:06 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RB 29..2968 1..2940 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:55 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RB 29..2968 1..2940 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:57 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RB 31..2970 1..2940 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:31 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RB 29..2968 1..2940 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:03 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RB 31..2970 1..2940 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:57 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
X 2080640..2081659 1..1020 100 -> Plus
X 2090969..2091450 1021..1502 100 -> Plus
X 2091518..2091733 1503..1718 100 -> Plus
X 2091802..2091891 1719..1808 100 -> Plus
X 2091962..2093093 1809..2940 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:57 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
X 2080640..2081659 1..1020 100 -> Plus
X 2090969..2091450 1021..1502 100 -> Plus
X 2091518..2091733 1503..1718 100 -> Plus
X 2091802..2091891 1719..1808 100 -> Plus
X 2091962..2093093 1809..2940 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:57 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
X 2080640..2081659 1..1020 100 -> Plus
X 2090969..2091450 1021..1502 100 -> Plus
X 2091518..2091733 1503..1718 100 -> Plus
X 2091802..2091891 1719..1808 100 -> Plus
X 2091962..2093093 1809..2940 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:57 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1974673..1975692 1..1020 100 -> Plus
arm_X 1985002..1985483 1021..1502 100 -> Plus
arm_X 1985551..1985766 1503..1718 100 -> Plus
arm_X 1985835..1985924 1719..1808 100 -> Plus
arm_X 1985995..1987126 1809..2940 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:50 Download gff for LD08195.complete
Subject Subject Range Query Range Percent Splice Strand
X 2088738..2089757 1..1020 100 -> Plus
X 2099067..2099548 1021..1502 100 -> Plus
X 2099616..2099831 1503..1718 100 -> Plus
X 2099900..2099989 1719..1808 100 -> Plus
X 2100060..2101191 1809..2940 100   Plus

LD08195.pep Sequence

Translation from 466 to 1890

> LD08195.pep
MRDLGTKMAELKFEAPLAKFEETDEWGGCDFISSQNAINDTLNLNLKDSS
AGGKPDATKLRLLEDAVRDAHVSKNGGGVVGGGAGSISPNCNTLQGGSLI
EIGLSDVGLVPGEGAGVGLDGLEKRSLAVGDHVDNFTETFGGSLEDLVNT
FDEKITKCFGNYEENVEELAPVQVRSQEEIMNECQMWWTITGNFGNILPI
DWSKSYTRQMHMPTLNLGQNHTKQQQQNRNQQQQLHNQSHQAYPHTNGLG
SGSGSGLDAQTPGDEFNDLTSEDEAVANDLDMHALILNGLNGDMDDQPIK
TVEEVIKEIDDIMDEAESPLDEPETCDSEVIEKAREVLGAPLYAEKLQYL
TTTQLNELYMEMEVLIQELSETLINELALRDELEFEKELKNSFISLLLAV
QNKRRQYHVEKKRGKFQGPEPKYLTTVIPYHLENGTPNNQSLQVLIKILK
AINEDSPTVPALLTDYILKVLCPT*

LD08195.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21457-PA 473 GF21457-PA 1..473 1..474 1983 86.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12905-PA 473 GG12905-PA 1..473 1..474 2460 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24577-PA 459 GH24577-PA 1..459 8..474 1748 77 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
Unc-76-PC 474 CG3981-PC 1..474 1..474 2468 100 Plus
Unc-76-PA 474 CG3981-PA 1..474 1..474 2468 100 Plus
Unc-76-PB 474 CG3981-PB 1..474 1..474 2468 100 Plus
Unc-76-PD 289 CG3981-PD 1..289 186..474 1508 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15282-PA 463 GI15282-PA 1..463 1..474 1848 78.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18226-PA 431 GL18226-PA 1..406 1..435 1360 66.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17820-PA 447 GA17820-PA 1..447 8..474 2022 86.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19195-PA 465 GM19195-PA 1..465 8..474 2438 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16583-PA 691 GD16583-PA 561..691 186..316 495 90.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16936-PA 453 GJ16936-PA 1..453 8..474 1839 81.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25735-PA 465 GK25735-PA 1..465 1..474 1934 84.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16233-PA 472 GE16233-PA 1..472 1..474 2439 97.1 Plus

LD08195.hyp Sequence

Translation from 466 to 1890

> LD08195.hyp
MRDLGTKMAELKFEAPLAKFEETDEWGGCDFISSQNAINDTLNLNLKDSS
AGGKPDATKLRLLEDAVRDAHVSKNGGGVVGGGAGSISPNCNTLQGGSLI
EIGLSDVGLVPGEGAGVGLDGLEKRSLAVGDHVDNFTETFGGSLEDLVNT
FDEKITKCFGNYEENVEELAPVQVRSQEEIMNECQMWWTITGNFGNILPI
DWSKSYTRQMHMPTLNLGQNHTKQQQQNRNQQQQLHNQSHQAYPHTNGLG
SGSGSGLDAQTPGDEFNDLTSEDEAVANDLDMHALILNGLNGDMDDQPIK
TVEEVIKEIDDIMDEAESPLDEPETCDSEVIEKAREVLGAPLYAEKLQYL
TTTQLNELYMEMEVLIQELSETLINELALRDELEFEKELKNSFISLLLAV
QNKRRQYHVEKKRGKFQGPEPKYLTTVIPYHLENGTPNNQSLQVLIKILK
AINEDSPTVPALLTDYILKVLCPT*

LD08195.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Unc-76-PC 474 CG3981-PC 1..474 1..474 2468 100 Plus
Unc-76-PA 474 CG3981-PA 1..474 1..474 2468 100 Plus
Unc-76-PB 474 CG3981-PB 1..474 1..474 2468 100 Plus
Unc-76-PD 289 CG3981-PD 1..289 186..474 1508 100 Plus