BDGP Sequence Production Resources |
Search the DGRC for LD08230
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 82 |
Well: | 30 |
Vector: | pBS SK- |
Associated Gene/Transcript | Sdc-RA |
Protein status: | LD08230.pep: gold |
Preliminary Size: | 1970 |
Sequenced Size: | 1884 |
Gene | Date | Evidence |
---|---|---|
CG10497 | 2001-11-09 | Blastp of sequenced clone |
CG10497 | 2003-01-01 | Sim4 clustering to Release 3 |
Sdc | 2008-04-29 | Release 5.5 accounting |
Sdc | 2008-08-15 | Release 5.9 accounting |
Sdc | 2008-12-18 | 5.12 accounting |
1884 bp (1884 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069377
> LD08230.complete CGAAGAAGGCACGGTTACGTCCGGATTTTAGCGCGATTTCGTGTCTGTTG TTTGGTCGGCACTCGAGTGTAAAGAAATTTGTACATCCCCGAAAAGAATC GCGAGTGCAATTTTGTAAATACGGAGAGGAAAAGTTTCATGTGTGTATTT AAACAGCGTTCTTCTAGTGTGAAACCAGTTTAAAAAGCTGCAAGAAATAT ATATAGCTCAATATATATATTTATATATGTGTGCCGCCGCCAGTTCTAAT CTTTAAATCAATAAACAAAACTGGAAGCCATTAGCTGAAATCACAACAAC AGCAACCGCAGAAGAAACCAACGGGGAAAATGAAGCCAAAGCAGAAGATT TCCGTAGAGCCGCTATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGC CGCCACCCACGCTCAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGC CATCAGCAGCAGCTTCTCGGCCCCATGATGAAATCTATATCGACGATGAT AGCATCGAGGGATCCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAA AGATCCGGACTATTCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCG AACCCGATCAGCATTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGC AGCAACTCCGGCATAAACACAGCTCATACACCAACACAAACCTCATCCAC AATCCCAACAACATCGACTTCGACACCAATGCCGACAACAACCCCCACAG CGACAACCCCCGCATCCACCACAACGGCGGCAGCAACCCAGATATCGTCC TTTGCCAATAGCAGTAGCACCACCACCACCACGTTGGCTCCCACGATTCC CGCAGAACCGCAGCAACCGCTGTTCCCGCCATTCGACAAGGATCTGGATA CGGAGTCCAGCGGCGATGGCATCGATGCTGATGCTGAGGATGACGATGAG GACGATGGCGACGATAAGGACTATGACTATAACAAGGAGCTGGACAAAGA AATCGACATCGATGGTCCCGAGCCGGGACATCTGCCGCCAGTTGTCCATC ATAATACCGTTGAAACTGGTCACATACCCACTACGGATGAAATCGATGTG GATGGCGGCGATGAGGATGACAATGGGGATAGCGACATCGATGGTCCGCG GATCGGTGGCAACGATGGAGATATTACAGAGCGCGGACCGGGTGCAGGTG GCAGCAACGTGCACGAATTGGACCCCAATACGAACGTGAATAGCCAGCCC TCCGACACAAAGGGCATCGATCACAGGCCCAACGGCAACGAAGTGGTCAT CATGAGCGAGGACGATCGCACGTCGAGCTTCTTCTCGCAGCCCGGAATTC TGGCTGCTGTCATTGGCGGTGCCGTCGTTGGCCTGCTCTGCGCCATACTC GTGGTCATGTTCATCGTGTACCGCATGAGGAAAAAGGACGAGGGATCCTA TGCGCTGGACGAGCCAAAGAGATCGCCGGCCAACAATTCGTATGCGAAAA ATGCGAATAACCGCGAGTTCTACGCCTGAGATAATGGCACGTCGCGCAGG TATTAAGTTGACCACAAGTGCAGGAACAAAGTGTGCGTAAGGACGGAACG GTGTGCGTATGACTGGACGAAGGCGGAGCGACTGGGTTTGGTTTGGCTCA ACTGAATACACTGTGCGGAGTGGTGGGGGTGCAGCATCATCGGCAAACCA CTGAAACAAGGATTAATCATCCGCAGCAGCAGCTACAAAACTAACACAAA AACAAATGAAAATTTCAAACGTTTTCAAACACACACAATTTTTCGTGAGG GGTAAATTAAATTAAAACAAAACAAGAAAAGAACACAAATCGGCAATATA ATAACGAGGAAAAACAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sdc-RF | 2503 | Sdc-RF | 29..1906 | 1..1878 | 9390 | 100 | Plus |
Sdc.a | 2661 | Sdc.a | 322..2064 | 133..1878 | 8660 | 99.8 | Plus |
Sdc-RA | 2605 | Sdc-RA | 270..1993 | 155..1878 | 8620 | 100 | Plus |
Sdc.a | 2661 | Sdc.a | 29..162 | 1..134 | 670 | 100 | Plus |
Sdc-RA | 2605 | Sdc-RA | 138..271 | 1..134 | 670 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 17284613..17285134 | 1188..670 | 2515 | 99.2 | Minus |
chr2R | 21145070 | chr2R | 17280773..17281283 | 1865..1356 | 2475 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 17366599..17366888 | 422..133 | 1450 | 100 | Minus |
chr2R | 21145070 | chr2R | 17281425..17281592 | 1356..1189 | 825 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 17285726..17285864 | 669..531 | 695 | 100 | Minus |
chr2R | 21145070 | chr2R | 17367522..17367655 | 134..1 | 655 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 17298835..17298945 | 530..420 | 555 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 21394214..21394736 | 1878..1356 | 2615 | 100 | Minus |
2R | 25286936 | 2R | 21398065..21398583 | 1188..670 | 2595 | 100 | Minus |
2R | 25286936 | 2R | 21480091..21480380 | 422..133 | 1450 | 100 | Minus |
2R | 25286936 | 2R | 21394878..21395045 | 1356..1189 | 840 | 100 | Minus |
2R | 25286936 | 2R | 21399175..21399313 | 669..531 | 695 | 100 | Minus |
2R | 25286936 | 2R | 21481014..21481147 | 134..1 | 670 | 100 | Minus |
2R | 25286936 | 2R | 21412311..21412421 | 530..420 | 555 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 21395413..21395935 | 1878..1356 | 2615 | 100 | Minus |
2R | 25260384 | 2R | 21399264..21399782 | 1188..670 | 2595 | 100 | Minus |
2R | 25260384 | 2R | 21481290..21481579 | 422..133 | 1450 | 100 | Minus |
2R | 25260384 | 2R | 21396077..21396244 | 1356..1189 | 840 | 100 | Minus |
2R | 25260384 | 2R | 21400374..21400512 | 669..531 | 695 | 100 | Minus |
2R | 25260384 | 2R | 21482213..21482346 | 134..1 | 670 | 100 | Minus |
2R | 25260384 | 2R | 21413510..21413620 | 530..420 | 555 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2533 | 607..771 | 173 | 60.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2459..2530 | 1681..1749 | 118 | 68.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1060..1132 | 278..347 | 114 | 65.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17284613..17284812 | 989..1188 | 99 | == | Minus |
chr2R | 17366599..17366886 | 135..422 | 100 | <- | Minus |
chr2R | 17367522..17367655 | 1..134 | 99 | Minus | |
chr2R | 17284891..17285134 | 670..910 | 98 | <- | Minus |
chr2R | 17285726..17285864 | 531..669 | 100 | <- | Minus |
chr2R | 17298835..17298942 | 423..530 | 100 | <- | Minus |
chr2R | 17280837..17281282 | 1357..1801 | 99 | <- | Minus |
chr2R | 17281425..17281592 | 1189..1356 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RA | 1..1200 | 330..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RF | 1..1200 | 330..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RA | 1..1200 | 330..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RA | 1..1200 | 330..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RA | 1..1200 | 330..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RA | 22..153 | 1..132 | 100 | == | Plus |
Sdc-RA | 154..1864 | 155..1865 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RF | 29..1893 | 1..1865 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RA | 30..161 | 1..132 | 100 | == | Plus |
Sdc-RA | 162..1872 | 155..1865 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RA | 22..153 | 1..132 | 100 | == | Plus |
Sdc-RA | 154..1864 | 155..1865 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RA | 30..161 | 1..132 | 100 | == | Plus |
Sdc-RA | 162..1872 | 155..1865 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21394227..21394735 | 1357..1865 | 100 | <- | Minus |
2R | 21394878..21395045 | 1189..1356 | 100 | <- | Minus |
2R | 21398065..21398583 | 670..1188 | 100 | <- | Minus |
2R | 21399175..21399313 | 531..669 | 100 | <- | Minus |
2R | 21412311..21412418 | 423..530 | 100 | <- | Minus |
2R | 21480091..21480378 | 135..422 | 100 | <- | Minus |
2R | 21481014..21481147 | 1..134 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21394227..21394735 | 1357..1865 | 100 | <- | Minus |
2R | 21394878..21395045 | 1189..1356 | 100 | <- | Minus |
2R | 21398065..21398583 | 670..1188 | 100 | <- | Minus |
2R | 21399175..21399313 | 531..669 | 100 | <- | Minus |
2R | 21412311..21412418 | 423..530 | 100 | <- | Minus |
2R | 21480091..21480378 | 135..422 | 100 | <- | Minus |
2R | 21481014..21481147 | 1..134 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21394227..21394735 | 1357..1865 | 100 | <- | Minus |
2R | 21394878..21395045 | 1189..1356 | 100 | <- | Minus |
2R | 21398065..21398583 | 670..1188 | 100 | <- | Minus |
2R | 21399175..21399313 | 531..669 | 100 | <- | Minus |
2R | 21412311..21412418 | 423..530 | 100 | <- | Minus |
2R | 21480091..21480378 | 135..422 | 100 | <- | Minus |
2R | 21481014..21481147 | 1..134 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17281732..17282240 | 1357..1865 | 100 | <- | Minus |
arm_2R | 17282383..17282550 | 1189..1356 | 100 | <- | Minus |
arm_2R | 17285570..17286088 | 670..1188 | 100 | <- | Minus |
arm_2R | 17286680..17286818 | 531..669 | 100 | <- | Minus |
arm_2R | 17299816..17299923 | 423..530 | 100 | <- | Minus |
arm_2R | 17367596..17367883 | 135..422 | 100 | <- | Minus |
arm_2R | 17368519..17368652 | 1..134 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21481290..21481577 | 135..422 | 100 | <- | Minus |
2R | 21482213..21482346 | 1..134 | 100 | Minus | |
2R | 21395426..21395934 | 1357..1865 | 100 | <- | Minus |
2R | 21396077..21396244 | 1189..1356 | 100 | <- | Minus |
2R | 21399264..21399782 | 670..1188 | 100 | <- | Minus |
2R | 21400374..21400512 | 531..669 | 100 | <- | Minus |
2R | 21413510..21413617 | 423..530 | 100 | <- | Minus |
Translation from 329 to 1528
> LD08230.hyp MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH NTRISQSSNSGINTAHTPTQTSSTIPTTSTSTPMPTTTPTATTPASTTTA AATQISSFANSSSTTTTTLAPTIPAEPQQPLFPPFDKDLDTESSGDGIDA DAEDDDEDDGDDKDYDYNKELDKEIDIDGPEPGHLPPVVHHNTVETGHIP TTDEIDVDGGDEDDNGDSDIDGPRIGGNDGDITERGPGAGGSNVHELDPN TNVNSQPSDTKGIDHRPNGNEVVIMSEDDRTSSFFSQPGILAAVIGGAVV GLLCAILVVMFIVYRMRKKDEGSYALDEPKRSPANNSYAKNANNREFYA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sdc-PA | 399 | CG10497-PA | 1..399 | 1..399 | 2096 | 100 | Plus |
Sdc-PD | 398 | CG10497-PD | 1..398 | 1..399 | 2080 | 99.7 | Plus |
Sdc-PI | 494 | CG10497-PI | 1..494 | 1..399 | 1553 | 67.4 | Plus |
Sdc-PJ | 495 | CG10497-PJ | 1..495 | 1..399 | 1535 | 66.3 | Plus |
Sdc-PH | 266 | CG10497-PH | 1..266 | 134..399 | 1411 | 100 | Plus |
Translation from 329 to 1528
> LD08230.pep MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH NTRISQSSNSGINTAHTPTQTSSTIPTTSTSTPMPTTTPTATTPASTTTA AATQISSFANSSSTTTTTLAPTIPAEPQQPLFPPFDKDLDTESSGDGIDA DAEDDDEDDGDDKDYDYNKELDKEIDIDGPEPGHLPPVVHHNTVETGHIP TTDEIDVDGGDEDDNGDSDIDGPRIGGNDGDITERGPGAGGSNVHELDPN TNVNSQPSDTKGIDHRPNGNEVVIMSEDDRTSSFFSQPGILAAVIGGAVV GLLCAILVVMFIVYRMRKKDEGSYALDEPKRSPANNSYAKNANNREFYA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12095-PA | 438 | GF12095-PA | 314..438 | 277..399 | 583 | 92 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20776-PA | 406 | GG20776-PA | 190..406 | 186..399 | 911 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20057-PA | 120 | GH20057-PA | 5..120 | 276..399 | 533 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sdc-PA | 399 | CG10497-PA | 1..399 | 1..399 | 2096 | 100 | Plus |
Sdc-PD | 398 | CG10497-PD | 1..398 | 1..399 | 2080 | 99.7 | Plus |
Sdc-PI | 494 | CG10497-PI | 1..494 | 1..399 | 1553 | 67.4 | Plus |
Sdc-PJ | 495 | CG10497-PJ | 1..495 | 1..399 | 1535 | 66.3 | Plus |
Sdc-PH | 266 | CG10497-PH | 1..266 | 134..399 | 1411 | 100 | Plus |
Sdc-PB | 226 | CG10497-PB | 1..132 | 1..132 | 592 | 87.9 | Plus |
Sdc-PK | 322 | CG10497-PK | 1..120 | 1..120 | 591 | 95 | Plus |
Sdc-PK | 322 | CG10497-PK | 189..322 | 265..399 | 589 | 88.1 | Plus |
Sdc-PB | 226 | CG10497-PB | 57..226 | 253..399 | 582 | 72.9 | Plus |
Sdc-PG | 75 | CG10497-PG | 1..75 | 325..399 | 380 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20467-PA | 426 | GI20467-PA | 45..426 | 30..399 | 690 | 54 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17492-PA | 468 | GL17492-PA | 353..468 | 283..399 | 604 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10355-PB | 423 | GA10355-PB | 308..423 | 283..399 | 601 | 97.4 | Plus |
Dpse\GA10355-PD | 223 | GA10355-PD | 113..223 | 289..399 | 580 | 97.3 | Plus |
Dpse\GA10355-PD | 223 | GA10355-PD | 34..113 | 37..115 | 312 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15720-PA | 388 | GM15720-PA | 1..388 | 1..399 | 1901 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25198-PA | 398 | GD25198-PA | 1..398 | 1..399 | 1993 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22317-PA | 433 | GJ22317-PA | 327..433 | 294..399 | 523 | 89.7 | Plus |