Clone LD08230 Report

Search the DGRC for LD08230

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:82
Well:30
Vector:pBS SK-
Associated Gene/TranscriptSdc-RA
Protein status:LD08230.pep: gold
Preliminary Size:1970
Sequenced Size:1884

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10497 2001-11-09 Blastp of sequenced clone
CG10497 2003-01-01 Sim4 clustering to Release 3
Sdc 2008-04-29 Release 5.5 accounting
Sdc 2008-08-15 Release 5.9 accounting
Sdc 2008-12-18 5.12 accounting

Clone Sequence Records

LD08230.complete Sequence

1884 bp (1884 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069377

> LD08230.complete
CGAAGAAGGCACGGTTACGTCCGGATTTTAGCGCGATTTCGTGTCTGTTG
TTTGGTCGGCACTCGAGTGTAAAGAAATTTGTACATCCCCGAAAAGAATC
GCGAGTGCAATTTTGTAAATACGGAGAGGAAAAGTTTCATGTGTGTATTT
AAACAGCGTTCTTCTAGTGTGAAACCAGTTTAAAAAGCTGCAAGAAATAT
ATATAGCTCAATATATATATTTATATATGTGTGCCGCCGCCAGTTCTAAT
CTTTAAATCAATAAACAAAACTGGAAGCCATTAGCTGAAATCACAACAAC
AGCAACCGCAGAAGAAACCAACGGGGAAAATGAAGCCAAAGCAGAAGATT
TCCGTAGAGCCGCTATTGCTAGTCGCAATTCTCATCGGAGTTCTGGTAGC
CGCCACCCACGCTCAAGATCAGAAATCGGTGAAACCATCGGCGGCAGCGC
CATCAGCAGCAGCTTCTCGGCCCCATGATGAAATCTATATCGACGATGAT
AGCATCGAGGGATCCGGCGGACGCGGCGGTATACACGAAGATCTAGAGAA
AGATCCGGACTATTCTGGCTCCGGCTTTGGACCCGATGACGAGGACGCCG
AACCCGATCAGCATTCGCACAGTTCGCACAACACGCGCATCTCGCAGAGC
AGCAACTCCGGCATAAACACAGCTCATACACCAACACAAACCTCATCCAC
AATCCCAACAACATCGACTTCGACACCAATGCCGACAACAACCCCCACAG
CGACAACCCCCGCATCCACCACAACGGCGGCAGCAACCCAGATATCGTCC
TTTGCCAATAGCAGTAGCACCACCACCACCACGTTGGCTCCCACGATTCC
CGCAGAACCGCAGCAACCGCTGTTCCCGCCATTCGACAAGGATCTGGATA
CGGAGTCCAGCGGCGATGGCATCGATGCTGATGCTGAGGATGACGATGAG
GACGATGGCGACGATAAGGACTATGACTATAACAAGGAGCTGGACAAAGA
AATCGACATCGATGGTCCCGAGCCGGGACATCTGCCGCCAGTTGTCCATC
ATAATACCGTTGAAACTGGTCACATACCCACTACGGATGAAATCGATGTG
GATGGCGGCGATGAGGATGACAATGGGGATAGCGACATCGATGGTCCGCG
GATCGGTGGCAACGATGGAGATATTACAGAGCGCGGACCGGGTGCAGGTG
GCAGCAACGTGCACGAATTGGACCCCAATACGAACGTGAATAGCCAGCCC
TCCGACACAAAGGGCATCGATCACAGGCCCAACGGCAACGAAGTGGTCAT
CATGAGCGAGGACGATCGCACGTCGAGCTTCTTCTCGCAGCCCGGAATTC
TGGCTGCTGTCATTGGCGGTGCCGTCGTTGGCCTGCTCTGCGCCATACTC
GTGGTCATGTTCATCGTGTACCGCATGAGGAAAAAGGACGAGGGATCCTA
TGCGCTGGACGAGCCAAAGAGATCGCCGGCCAACAATTCGTATGCGAAAA
ATGCGAATAACCGCGAGTTCTACGCCTGAGATAATGGCACGTCGCGCAGG
TATTAAGTTGACCACAAGTGCAGGAACAAAGTGTGCGTAAGGACGGAACG
GTGTGCGTATGACTGGACGAAGGCGGAGCGACTGGGTTTGGTTTGGCTCA
ACTGAATACACTGTGCGGAGTGGTGGGGGTGCAGCATCATCGGCAAACCA
CTGAAACAAGGATTAATCATCCGCAGCAGCAGCTACAAAACTAACACAAA
AACAAATGAAAATTTCAAACGTTTTCAAACACACACAATTTTTCGTGAGG
GGTAAATTAAATTAAAACAAAACAAGAAAAGAACACAAATCGGCAATATA
ATAACGAGGAAAAACAAAAAAAAAAAAAAAAAAA

LD08230.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-RF 2503 Sdc-RF 29..1906 1..1878 9390 100 Plus
Sdc.a 2661 Sdc.a 322..2064 133..1878 8660 99.8 Plus
Sdc-RA 2605 Sdc-RA 270..1993 155..1878 8620 100 Plus
Sdc.a 2661 Sdc.a 29..162 1..134 670 100 Plus
Sdc-RA 2605 Sdc-RA 138..271 1..134 670 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17284613..17285134 1188..670 2515 99.2 Minus
chr2R 21145070 chr2R 17280773..17281283 1865..1356 2475 99.4 Minus
chr2R 21145070 chr2R 17366599..17366888 422..133 1450 100 Minus
chr2R 21145070 chr2R 17281425..17281592 1356..1189 825 99.4 Minus
chr2R 21145070 chr2R 17285726..17285864 669..531 695 100 Minus
chr2R 21145070 chr2R 17367522..17367655 134..1 655 99.3 Minus
chr2R 21145070 chr2R 17298835..17298945 530..420 555 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21394214..21394736 1878..1356 2615 100 Minus
2R 25286936 2R 21398065..21398583 1188..670 2595 100 Minus
2R 25286936 2R 21480091..21480380 422..133 1450 100 Minus
2R 25286936 2R 21394878..21395045 1356..1189 840 100 Minus
2R 25286936 2R 21399175..21399313 669..531 695 100 Minus
2R 25286936 2R 21481014..21481147 134..1 670 100 Minus
2R 25286936 2R 21412311..21412421 530..420 555 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21395413..21395935 1878..1356 2615 100 Minus
2R 25260384 2R 21399264..21399782 1188..670 2595 100 Minus
2R 25260384 2R 21481290..21481579 422..133 1450 100 Minus
2R 25260384 2R 21396077..21396244 1356..1189 840 100 Minus
2R 25260384 2R 21400374..21400512 669..531 695 100 Minus
2R 25260384 2R 21482213..21482346 134..1 670 100 Minus
2R 25260384 2R 21413510..21413620 530..420 555 100 Minus
Blast to na_te.dros performed 2019-03-16 15:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2533 607..771 173 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2459..2530 1681..1749 118 68.5 Plus
roo 9092 roo DM_ROO 9092bp 1060..1132 278..347 114 65.8 Plus

LD08230.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:09:29 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17284613..17284812 989..1188 99 == Minus
chr2R 17366599..17366886 135..422 100 <- Minus
chr2R 17367522..17367655 1..134 99   Minus
chr2R 17284891..17285134 670..910 98 <- Minus
chr2R 17285726..17285864 531..669 100 <- Minus
chr2R 17298835..17298942 423..530 100 <- Minus
chr2R 17280837..17281282 1357..1801 99 <- Minus
chr2R 17281425..17281592 1189..1356 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:09:59 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 1..1200 330..1529 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:09 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RF 1..1200 330..1529 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:49 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 1..1200 330..1529 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:46 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 1..1200 330..1529 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:41:20 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 1..1200 330..1529 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:09:58 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 22..153 1..132 100 == Plus
Sdc-RA 154..1864 155..1865 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:09 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RF 29..1893 1..1865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:49 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 30..161 1..132 100 == Plus
Sdc-RA 162..1872 155..1865 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:46 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 22..153 1..132 100 == Plus
Sdc-RA 154..1864 155..1865 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:41:20 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RA 30..161 1..132 100 == Plus
Sdc-RA 162..1872 155..1865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:29 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21394227..21394735 1357..1865 100 <- Minus
2R 21394878..21395045 1189..1356 100 <- Minus
2R 21398065..21398583 670..1188 100 <- Minus
2R 21399175..21399313 531..669 100 <- Minus
2R 21412311..21412418 423..530 100 <- Minus
2R 21480091..21480378 135..422 100 <- Minus
2R 21481014..21481147 1..134 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:29 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21394227..21394735 1357..1865 100 <- Minus
2R 21394878..21395045 1189..1356 100 <- Minus
2R 21398065..21398583 670..1188 100 <- Minus
2R 21399175..21399313 531..669 100 <- Minus
2R 21412311..21412418 423..530 100 <- Minus
2R 21480091..21480378 135..422 100 <- Minus
2R 21481014..21481147 1..134 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:29 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21394227..21394735 1357..1865 100 <- Minus
2R 21394878..21395045 1189..1356 100 <- Minus
2R 21398065..21398583 670..1188 100 <- Minus
2R 21399175..21399313 531..669 100 <- Minus
2R 21412311..21412418 423..530 100 <- Minus
2R 21480091..21480378 135..422 100 <- Minus
2R 21481014..21481147 1..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:49 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17281732..17282240 1357..1865 100 <- Minus
arm_2R 17282383..17282550 1189..1356 100 <- Minus
arm_2R 17285570..17286088 670..1188 100 <- Minus
arm_2R 17286680..17286818 531..669 100 <- Minus
arm_2R 17299816..17299923 423..530 100 <- Minus
arm_2R 17367596..17367883 135..422 100 <- Minus
arm_2R 17368519..17368652 1..134 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:05 Download gff for LD08230.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21481290..21481577 135..422 100 <- Minus
2R 21482213..21482346 1..134 100   Minus
2R 21395426..21395934 1357..1865 100 <- Minus
2R 21396077..21396244 1189..1356 100 <- Minus
2R 21399264..21399782 670..1188 100 <- Minus
2R 21400374..21400512 531..669 100 <- Minus
2R 21413510..21413617 423..530 100 <- Minus

LD08230.hyp Sequence

Translation from 329 to 1528

> LD08230.hyp
MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD
EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH
NTRISQSSNSGINTAHTPTQTSSTIPTTSTSTPMPTTTPTATTPASTTTA
AATQISSFANSSSTTTTTLAPTIPAEPQQPLFPPFDKDLDTESSGDGIDA
DAEDDDEDDGDDKDYDYNKELDKEIDIDGPEPGHLPPVVHHNTVETGHIP
TTDEIDVDGGDEDDNGDSDIDGPRIGGNDGDITERGPGAGGSNVHELDPN
TNVNSQPSDTKGIDHRPNGNEVVIMSEDDRTSSFFSQPGILAAVIGGAVV
GLLCAILVVMFIVYRMRKKDEGSYALDEPKRSPANNSYAKNANNREFYA*

LD08230.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-PA 399 CG10497-PA 1..399 1..399 2096 100 Plus
Sdc-PD 398 CG10497-PD 1..398 1..399 2080 99.7 Plus
Sdc-PI 494 CG10497-PI 1..494 1..399 1553 67.4 Plus
Sdc-PJ 495 CG10497-PJ 1..495 1..399 1535 66.3 Plus
Sdc-PH 266 CG10497-PH 1..266 134..399 1411 100 Plus

LD08230.pep Sequence

Translation from 329 to 1528

> LD08230.pep
MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD
EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH
NTRISQSSNSGINTAHTPTQTSSTIPTTSTSTPMPTTTPTATTPASTTTA
AATQISSFANSSSTTTTTLAPTIPAEPQQPLFPPFDKDLDTESSGDGIDA
DAEDDDEDDGDDKDYDYNKELDKEIDIDGPEPGHLPPVVHHNTVETGHIP
TTDEIDVDGGDEDDNGDSDIDGPRIGGNDGDITERGPGAGGSNVHELDPN
TNVNSQPSDTKGIDHRPNGNEVVIMSEDDRTSSFFSQPGILAAVIGGAVV
GLLCAILVVMFIVYRMRKKDEGSYALDEPKRSPANNSYAKNANNREFYA*

LD08230.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12095-PA 438 GF12095-PA 314..438 277..399 583 92 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20776-PA 406 GG20776-PA 190..406 186..399 911 91.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20057-PA 120 GH20057-PA 5..120 276..399 533 81.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-PA 399 CG10497-PA 1..399 1..399 2096 100 Plus
Sdc-PD 398 CG10497-PD 1..398 1..399 2080 99.7 Plus
Sdc-PI 494 CG10497-PI 1..494 1..399 1553 67.4 Plus
Sdc-PJ 495 CG10497-PJ 1..495 1..399 1535 66.3 Plus
Sdc-PH 266 CG10497-PH 1..266 134..399 1411 100 Plus
Sdc-PB 226 CG10497-PB 1..132 1..132 592 87.9 Plus
Sdc-PK 322 CG10497-PK 1..120 1..120 591 95 Plus
Sdc-PK 322 CG10497-PK 189..322 265..399 589 88.1 Plus
Sdc-PB 226 CG10497-PB 57..226 253..399 582 72.9 Plus
Sdc-PG 75 CG10497-PG 1..75 325..399 380 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20467-PA 426 GI20467-PA 45..426 30..399 690 54 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17492-PA 468 GL17492-PA 353..468 283..399 604 97.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10355-PB 423 GA10355-PB 308..423 283..399 601 97.4 Plus
Dpse\GA10355-PD 223 GA10355-PD 113..223 289..399 580 97.3 Plus
Dpse\GA10355-PD 223 GA10355-PD 34..113 37..115 312 81.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15720-PA 388 GM15720-PA 1..388 1..399 1901 94.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25198-PA 398 GD25198-PA 1..398 1..399 1993 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22317-PA 433 GJ22317-PA 327..433 294..399 523 89.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20743-PA 570 GK20743-PA 453..570 283..399 516 81.4 Plus
Dwil\GK20743-PA 570 GK20743-PA 32..142 12..110 247 61.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13713-PA 499 GE13713-PA 273..499 173..399 1050 96 Plus
Dyak\GE13713-PA 499 GE13713-PA 1..120 1..120 524 93.3 Plus