Clone LD08295 Report

Search the DGRC for LD08295

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:82
Well:95
Vector:pBS SK-
Associated Gene/Transcriptheix-RA
Protein status:LD08295.pep: gold
Preliminary Size:2862
Sequenced Size:3165

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5876 2001-01-01 Release 2 assignment
CG5876 2001-10-10 Blastp of sequenced clone
CG5876 2003-01-01 Sim4 clustering to Release 3
heix 2008-04-29 Release 5.5 accounting
heix 2008-08-15 Release 5.9 accounting
heix 2008-12-18 5.12 accounting

Clone Sequence Records

LD08295.complete Sequence

3165 bp (3165 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061093

> LD08295.complete
CCACCTTCAACGAAAAAGTGTAACCTTTTTTCGTTTTTGCGCTGACGTGA
CGTGACAGTTGATTTGTTTGATTAAAATAACTAAGAGTAAAATCGCAGCC
AAATCGATTTGCGCCACTAACCCGGAATCGATAGCCGGAAGCAAAGACGC
AGCCGGAAAAGGAGAGGCATATAAGAAGAACGATCCTCGCACCGGTCGAG
GAAAAGAGAGAGAGAGAGAGGGGCAGCGAGAGAGAGAGAGCGTGAGAAAC
TGGGAGCTGCACGGGTGAAATTTCGTGGTTTCGGGACCCCGACCACCTGA
GCTCTCCACCCCCCGCTGATAATATACATATCCCCGCATATATTCCCCAC
TTTCAAGATGCTGTGTATACAATATTAGCGATTATCGAGACCAGGCAGCG
CATGTGCCGGCATCCAAAAAGGCACAAATTGAATACTTTAACTATTGTAA
ACAAATTCTGGAGAGGAGGTGACCAAGGTCAAACAATCCGACGAATACGA
ATACCTGGCGGCTAGTCTCGTTTCACTCCACCGCAAAGTGCCAGTTAACC
AGTGCCGCTTGCCATGGCCACAAGCAGCCAGCTGTTGCCCAATGGCAACT
TGTCCAGGAATGGCAAGACCAAGACAGAGGACGGTGAGGAGGTGGAAGCC
GTTGTTGGAGCTCGTGCAGCAGGTGCAGATGCCGGAGTAGCACTAACGGG
ACGACTAACAGGACACCCATCCACATCCGGAACGTTTATGAAACTGAAAA
CCTATCTCCTAGCTCTGCGTCCCTGGTCGCTGTCCGCCAGTCTGGTTCCA
ACGCTGCTCGGCTCAGCCCTGGCCTACCGCTCCCAGTGGGCGGAGGAGTT
TTCGCTGGCCACCTTCTTTCTCACCGCCTTCACCGTGGTCACCGTCCACT
GCGCCGGCAACGTAGTTAACACCTATTTCGACTTCATCAAGGGCATTGAC
AAGCAGAAAGCCGACGACCGCACGCTGGTGGATCACATACTCACCAAGGA
TGAGGTGGTATCGCTGGGTGCCATTCTGTACATGGCTGGCTGTGGAGGAT
TTGTTTTGCTGGCTGTGCTCAGTCCGGCGAAAATGGAGCACCTGGCACTG
ATCTACTTCGGGGGATTGTCCTCGAGCTTCCTGTACACCGGAGGCATTGG
TTTCAAGTACATCGCCCTGGGAGATCTGGTTATACTGATACTCTTTGGAC
CCATCTCGGTGCTATTCGCCTTCATGTCGCAAACAGGTCATTTGGACTGG
ACGACAATGGGCTATGCGATTCCTTTGGCTCTCAACACGGAGGCCATCCT
GCACAGCAACAACACAAGGGATGCGGACAACGATCGCCGGGCTGGAATCG
TAACGCTCGCCATTTTGATAGGCCGTACAGCATCGCACGTTCTGTATGCC
ATGCTGCTCTTTGCACCCTACTCATTGTTCTTCATCTTCGGTTTGAAGTA
CTCTCTGTGGTTCCTGCTGCCGCTGGTAACCCTGCCGCAAGCGTTCCAGA
TTGAGAAACGTTTCCGCAACGAACAGACGATGCATCTGGTGCCTCGGCAA
ACAGCCAAGCTGAACTTCTTTTTTGGCATCTTGTACGTGGTGGCCTGCTG
TTGTGCCCATCAGTTGCCCACCTTTGGATTGCGAAGAAATTGATAGACGG
GTTAAACGTACGGATCTGGCGGAAAATCTGAATCAGTGAGAACCTGGTGC
AATGTTTTAGGGAATTTCATTAGGTTTTAGTCAATGTGAGTAACATAAAG
GATGGGAGAATGAAGCTTTGTCAGCTTCTCACAGTTTGACGTTGCGCAAA
TTTCGAATGCTGCTAGTCGCCCGTTTGATTCTAAACTTTTGAACTGAACA
TATCCTAGCCCTAATGGGTCGATTAACTTGAGAGAAAACCTATGGTTAAT
GTAAGACATTTTGAAATACGGATTACAGTCCTAGTATCAGCTTAACAGTT
TACTATTTCGTTTCCAAACGATAATCCATAGGCATTGTGCAAACATAAAT
GGAATTTAATCCAATTGGATAAGCTAAAAAGTCTCTAACCAAATGCATAC
TTAAAATAAATATTAACATTATTTGGCAAATATTTTGATAGTCAAATGTT
AAGATCTGAAACATTTTATTTGCTTTCAAGTTGTTTAAACCAAAAGTATG
ATATTAGACAATTAATTTCTATGTCAAAAATTGCTTAAATTGCCCAAAGG
TTTGGCGACCATCGACCTTAACCTATCCCACTCGCTTTTTATTTATTTCA
TATCGTCTCAATTTTAAGTCCTAACCAATCAATGTTATTAATAATAATCA
TACTCTTCCTCTCGCTCGTTGGGAATCACGGACCAAGAACGTTTTGTGCA
GCAGCAACCAACCAATAATTGTAATTCAACTCACTTTTATATTATTCGAA
ACAATATATATATTTATATATATCACCACATTCACACGGGTGCAGATACT
TAAGTTTCGCGAATCAAAATGCAGATTTACTTTATGAATAGAAGTGCTTG
AAAATGCGGCTAAGTTGAAAGTTTTTTTTCGGCAATTGGCTGGCTTGCTT
TGTGAGTTTTATATTATATAATATTTATAATATTATATACACGAACACGA
GCATATATATATATATTTATACACAAATCTAGATCATGTAAGCCCAGTGT
CTAGCGGCAGGCTCAGAGTGAGAATTATATAAAGGAAAAATCGTGGAAAA
AAGCAAAACGAAAACAGAACACAAATTACAATTTTTAAATAACTATATAC
GTATGTAGATGTCGAGGCGAAGGAGCAACAATTGTTTTCCATTAACAATA
GCGTATGCATATAAACAAATAGCTTTAAATAACAAACAGATGAGGAGAAA
GCCAAAACCCATTCGCATTATACATTATAATCTATTGTGTAACTGAACAT
TTGTGTGGCAATATTTATTTGTACGCTAGATTTTTGTATATTCATTCATT
CTTTTGTATATCGCATAAAGAAATGCTTCTGTTGGAATCGCTCAGTAACC
GAGTGGAATTGAACTAAGTGAAAACTTCGTAGACTACAAATCAACAACCA
GATGAACAATAATAATTATAATGCTATTGATAATTAAATGTTTAATTAGA
CAATGTAAACGAGAATTGTGTAATATAAACTGATTTATATTTTATTGAAA
AAAAAAAAAAAAAAA

LD08295.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
heix-RA 3229 heix-RA 40..3188 1..3149 15745 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16294902..16297050 3147..1003 10590 99.6 Minus
chr2L 23010047 chr2L 16297724..16298730 1007..1 5035 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16296049..16298195 3149..1003 10735 100 Minus
2L 23513712 2L 16298869..16299875 1007..1 5035 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16296049..16298195 3149..1003 10735 100 Minus
2L 23513712 2L 16298869..16299875 1007..1 5035 100 Minus
Blast to na_te.dros performed 2019-03-16 04:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6704..7117 2697..3100 165 53.7 Plus
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 2505..2616 2980..2870 151 65.2 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 22..79 3043..3100 137 70.7 Plus
S2 1735 S2 S2 1735bp 52..147 2880..2781 120 63.4 Minus

LD08295.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:42:53 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16294902..16295414 2635..3147 100 == Minus
chr2L 16295490..16297048 1005..2559 98 <- Minus
chr2L 16297727..16298730 1..1004 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:41:09 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 1..1080 564..1643 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:57 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 1..1080 564..1643 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:38:52 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 1..1080 564..1643 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:57 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 1..1080 564..1643 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:48:06 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 1..1080 564..1643 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:47 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 1..3147 1..3147 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:56 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 1..3147 1..3147 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:52 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 1..3130 18..3147 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:57 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 1..3147 1..3147 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:48:06 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 1..3130 18..3147 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:53 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16296051..16298193 1005..3147 100 <- Minus
2L 16298872..16299875 1..1004 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:53 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16296051..16298193 1005..3147 100 <- Minus
2L 16298872..16299875 1..1004 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:53 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16296051..16298193 1005..3147 100 <- Minus
2L 16298872..16299875 1..1004 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:52 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16296051..16298193 1005..3147 100 <- Minus
arm_2L 16298872..16299875 1..1004 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:05 Download gff for LD08295.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16296051..16298193 1005..3147 100 <- Minus
2L 16298872..16299875 1..1004 100   Minus

LD08295.pep Sequence

Translation from 563 to 1642

> LD08295.pep
MATSSQLLPNGNLSRNGKTKTEDGEEVEAVVGARAAGADAGVALTGRLTG
HPSTSGTFMKLKTYLLALRPWSLSASLVPTLLGSALAYRSQWAEEFSLAT
FFLTAFTVVTVHCAGNVVNTYFDFIKGIDKQKADDRTLVDHILTKDEVVS
LGAILYMAGCGGFVLLAVLSPAKMEHLALIYFGGLSSSFLYTGGIGFKYI
ALGDLVILILFGPISVLFAFMSQTGHLDWTTMGYAIPLALNTEAILHSNN
TRDADNDRRAGIVTLAILIGRTASHVLYAMLLFAPYSLFFIFGLKYSLWF
LLPLVTLPQAFQIEKRFRNEQTMHLVPRQTAKLNFFFGILYVVACCCAHQ
LPTFGLRRN*

LD08295.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15328-PA 370 GF15328-PA 12..369 3..358 1624 87.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24176-PA 358 GG24176-PA 1..358 1..359 1834 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11433-PA 375 GH11433-PA 27..375 11..359 1516 81.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
heix-PA 359 CG5876-PA 1..359 1..359 1841 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14725-PA 352 GI14725-PA 47..352 54..359 1517 92.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14097-PA 354 GL14097-PA 4..353 14..358 1548 84.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19197-PA 354 GA19197-PA 4..353 14..358 1548 84.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17914-PA 359 GM17914-PA 1..359 1..359 1873 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21924-PA 359 GD21924-PA 1..359 1..359 1873 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17166-PA 377 GJ17166-PA 51..377 28..359 1537 87.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24744-PA 359 GK24744-PA 29..359 13..359 1520 84.1 Plus
Dwil\GK23562-PA 331 GK23562-PA 29..331 13..359 1310 75.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19370-PA 358 GE19370-PA 1..358 1..359 1830 97.2 Plus

LD08295.hyp Sequence

Translation from 563 to 1642

> LD08295.hyp
MATSSQLLPNGNLSRNGKTKTEDGEEVEAVVGARAAGADAGVALTGRLTG
HPSTSGTFMKLKTYLLALRPWSLSASLVPTLLGSALAYRSQWAEEFSLAT
FFLTAFTVVTVHCAGNVVNTYFDFIKGIDKQKADDRTLVDHILTKDEVVS
LGAILYMAGCGGFVLLAVLSPAKMEHLALIYFGGLSSSFLYTGGIGFKYI
ALGDLVILILFGPISVLFAFMSQTGHLDWTTMGYAIPLALNTEAILHSNN
TRDADNDRRAGIVTLAILIGRTASHVLYAMLLFAPYSLFFIFGLKYSLWF
LLPLVTLPQAFQIEKRFRNEQTMHLVPRQTAKLNFFFGILYVVACCCAHQ
LPTFGLRRN*

LD08295.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
heix-PA 359 CG5876-PA 1..359 1..359 1841 100 Plus