Clone LD08328 Report

Search the DGRC for LD08328

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:83
Well:28
Vector:pBS SK-
Associated Gene/TranscriptCG11986-RA
Protein status:LD08328.pep: gold
Preliminary Size:1392
Sequenced Size:1241

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11986 2001-01-01 Release 2 assignment
CG11986 2001-11-29 Blastp of sequenced clone
CG11986 2003-01-01 Sim4 clustering to Release 3
CG11986 2008-04-29 Release 5.5 accounting
CG11986 2008-08-15 Release 5.9 accounting
CG11986 2008-12-18 5.12 accounting

Clone Sequence Records

LD08328.complete Sequence

1241 bp (1241 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069378

> LD08328.complete
CTTTGATAAGCAATGTGTGGACGCACCTGTCTAACTCTAGACCCTGATCA
GGTAATTTGTGCCTGTAAATATCCAAAAAAATCTACTCGAAAGGAGCCGG
ATTTCAAAGAGAAAGATGATATGAAAGATGGGGAAGGATCCGAAATGGAG
ACTCCCGAGTGGAGGGCGGAATACAACCTGGGTAGACGCTACCAGGCCTC
CTACAACATAGCCCCTACTGATATTACGCCCGTGATCGTGTCCGCAGCTC
ATTTTTCAGACGCCGAGGATCAAGAGTGCGCCCGCGTGGTAACGCCCATG
ATGTGGGGCATGATTCCCTTTTGGCACAAGGGTGACTATCGGCGGCATGG
CCTTACCACCAACAATTGCCGTCTGGAACACCTGATGGACTCCAAGCTCT
ATCGCGGTCCCTTCAAGCGAGGTCAGCGGTGTGTAGTTATTTGCGAAGGA
TTCTATGAGTGGCAGACGGCTGGACCTGCGAAGAAGCCATCGGAGCGTGA
GGCTTACCTGGTATTCGTACCCCAGGCGGCGGATGTGAAGATCTACGACA
AGAATACATGGTCGCCCCAGGATGTGAAGCTTTTGCGAATGGCTGGACTT
TTTGACGTCTGGGAGGATGAAAGTGGCGACAAGATGTACAGCTACAGTAT
TATCACCTTCCAGTCCAGCAAAATTATGTCCTGGATGCACTACCGCATGC
CAGCGATCCTGGAAACCGAGCAGCAGATGAATGATTGGCTGGACTTTAAG
CGAGTTAGCGACAAGGAGGCCTTGGCTACATTGCGTCCGGCTACCGAACT
GCAGTGGCATCGTGTTACCAAGCTGGTAAACAACTCGCGAAACAAAAGCG
AGGAGTGCAACAAGCCGATCGAATTGGCGGCTAAGCCCGCAAAGCCACCG
ATGAACAAAACGATGATGTCTTGGCTGAATGCCCGTAAGAAGCGGGAAGA
TCAAATCAAAGCAAAACAGAGCGACGATGAGGATCAGGAAAAAGAAGCTA
CGACCATGGGAGGGACCTCCGCTGACGGCTCACCCGTAGAGAGGCCCGCC
AAGCGACCCAGATTCAGGGACTTTAAGAGGAATCGTACGGCAGCTCCCCC
GCAGAGCAGCGGCAGCTAGATGAAATCGGGCAAAAGATAAACCTCATCAG
TAACTAAAGTTCCATAGTTTGTAGTACATTAAGTTTATTTTCAGTAAAAA
CCAAAATTTTTATTCTCAATAAAAAAAAAAAAAAAAAAAAA

LD08328.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11986-RA 1417 CG11986-RA 107..1328 1..1222 6110 100 Plus
CG11986.b 1258 CG11986.b 43..1258 1..1220 6015 99.6 Plus
CG11986.a 1051 CG11986.a 70..1051 239..1220 4880 99.7 Plus
CG11986.a 1051 CG11986.a 43..74 1..32 160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4841463..4842163 33..733 3490 99.9 Plus
chr3R 27901430 chr3R 4842229..4842716 733..1220 2425 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9015569..9016269 33..733 3505 100 Plus
3R 32079331 3R 9016335..9016824 733..1222 2450 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8756400..8757100 33..733 3505 100 Plus
3R 31820162 3R 8757166..8757655 733..1222 2450 100 Plus
3R 31820162 3R 8756319..8756350 1..32 160 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:14:44 has no hits.

LD08328.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:15:39 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4841382..4841413 1..32 100 -> Plus
chr3R 4841463..4842162 33..732 99 -> Plus
chr3R 4842229..4842716 733..1220 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:41:11 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 1..1107 13..1119 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:24:19 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 1..1107 13..1119 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:12:27 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 1..1107 13..1119 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:51:05 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 1..1107 13..1119 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:31 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 1..1107 13..1119 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:59:48 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 43..1262 1..1220 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:24:19 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 43..1262 1..1220 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:12:27 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 43..1262 1..1220 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:51:05 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 43..1262 1..1220 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:31 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
CG11986-RA 43..1262 1..1220 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:39 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9015488..9015519 1..32 100 -> Plus
3R 9015569..9016268 33..732 100 -> Plus
3R 9016335..9016822 733..1220 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:39 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9015488..9015519 1..32 100 -> Plus
3R 9015569..9016268 33..732 100 -> Plus
3R 9016335..9016822 733..1220 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:39 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9015488..9015519 1..32 100 -> Plus
3R 9015569..9016268 33..732 100 -> Plus
3R 9016335..9016822 733..1220 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:12:27 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4841210..4841241 1..32 100 -> Plus
arm_3R 4841291..4841990 33..732 100 -> Plus
arm_3R 4842057..4842544 733..1220 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:27:30 Download gff for LD08328.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8756400..8757099 33..732 100 -> Plus
3R 8757166..8757653 733..1220 100   Plus
3R 8756319..8756350 1..32 100 -> Plus

LD08328.hyp Sequence

Translation from 12 to 1118

> LD08328.hyp
MCGRTCLTLDPDQVICACKYPKKSTRKEPDFKEKDDMKDGEGSEMETPEW
RAEYNLGRRYQASYNIAPTDITPVIVSAAHFSDAEDQECARVVTPMMWGM
IPFWHKGDYRRHGLTTNNCRLEHLMDSKLYRGPFKRGQRCVVICEGFYEW
QTAGPAKKPSEREAYLVFVPQAADVKIYDKNTWSPQDVKLLRMAGLFDVW
EDESGDKMYSYSIITFQSSKIMSWMHYRMPAILETEQQMNDWLDFKRVSD
KEALATLRPATELQWHRVTKLVNNSRNKSEECNKPIELAAKPAKPPMNKT
MMSWLNARKKREDQIKAKQSDDEDQEKEATTMGGTSADGSPVERPAKRPR
FRDFKRNRTAAPPQSSGS*

LD08328.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11986-PA 368 CG11986-PA 1..368 1..368 1993 100 Plus

LD08328.pep Sequence

Translation from 12 to 1118

> LD08328.pep
MCGRTCLTLDPDQVICACKYPKKSTRKEPDFKEKDDMKDGEGSEMETPEW
RAEYNLGRRYQASYNIAPTDITPVIVSAAHFSDAEDQECARVVTPMMWGM
IPFWHKGDYRRHGLTTNNCRLEHLMDSKLYRGPFKRGQRCVVICEGFYEW
QTAGPAKKPSEREAYLVFVPQAADVKIYDKNTWSPQDVKLLRMAGLFDVW
EDESGDKMYSYSIITFQSSKIMSWMHYRMPAILETEQQMNDWLDFKRVSD
KEALATLRPATELQWHRVTKLVNNSRNKSEECNKPIELAAKPAKPPMNKT
MMSWLNARKKREDQIKAKQSDDEDQEKEATTMGGTSADGSPVERPAKRPR
FRDFKRNRTAAPPQSSGS*

LD08328.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16577-PA 376 GF16577-PA 1..369 1..368 1663 82.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14649-PA 378 GG14649-PA 1..368 1..368 1762 88.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19381-PA 357 GH19381-PA 1..349 1..355 1319 71.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11986-PA 368 CG11986-PA 1..368 1..368 1993 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22584-PA 361 GI22584-PA 1..350 1..360 1350 72 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12116-PA 378 GL12116-PA 1..359 1..356 1588 81.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11312-PA 378 GA11312-PA 1..358 1..355 1586 81.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23780-PA 353 GM23780-PA 1..351 1..363 1736 89.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18590-PA 141 GD18590-PA 1..138 1..139 722 95 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10305-PA 360 GJ10305-PA 1..339 1..350 1382 73.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11678-PA 390 GK11678-PA 1..374 1..361 1518 73.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25924-PA 378 GE25924-PA 1..358 1..355 1767 91.1 Plus