Clone LD08471 Report

Search the DGRC for LD08471

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:84
Well:71
Vector:pBS SK-
Associated Gene/TranscriptMESR3-RA
Protein status:LD08471.pep: gold
Preliminary Size:2120
Sequenced Size:2094

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15162 2001-01-01 Release 2 assignment
CG15162 2001-11-09 Blastp of sequenced clone
CG15162 2003-01-01 Sim4 clustering to Release 3
MESR3 2008-04-29 Release 5.5 accounting
MESR3 2008-08-15 Release 5.9 accounting
MESR3 2008-12-18 5.12 accounting

Clone Sequence Records

LD08471.complete Sequence

2094 bp (2094 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069379

> LD08471.complete
GCGTGCGGACGTAAAGTAACTGCGACTGTTTCGTCTTTGGTGCGCGTATA
CTGGTGCCGTTTTATCACGTTGTATCTTAATAATAAGCGATAACAGCAGC
AGCATTGGCCACTAATTAAATGCTGAAGTGACTGTGTGTCAATTGAATCT
GTACGACTTTTGATTGAATTAAATTGCGAATTACAAAACACAAAAGCAAA
CGGCAATTAACGGTTATAAAGCCGGACCAGTGCGGCAATAAAAACAATTT
GATCGGGTGCCAAAAGATATTTTTGCACACACTCCTTTTTTGGGATAATT
AAAAGGACAGTGCTTGCCCGTGTGTGTCCTTCCGCTGGACTGGAGTGTGT
GTGTGTGTAGTGGTTGTGAAGGAATTTCTCATTAAACCGACGCTAAAAGG
ATTACGAACCCGTTCATCTTCATCAGACCCGCGTATCGAGTAACGTTCCT
TCTTCGATTTTTTCATCGACCGGAAACTTAAACCCGAAAACGGATCTTGA
AATTATGATGTCGCATCAACTGCAGCAGACACGCCGCCGTTTGGGCTCCG
TTAGCGATTCGGCGCCACCATCGGAGTCCAGTGAGGGCACAGGCTCCTCC
CTGGAGCCACGGGACGAGCTGATTCTCCATCCGGACTGGTCGGCCCACTC
GCATTCGTCGGCACAGAGGAGCAGCGCCCATGGAACCACATCGCTGTACA
ATGCCTCGGATATCGATGCGGATACCATCAGCACGGACACCACGAGCAAC
ACAAATCTATCGGACTACGAACGTGGTCAGGTGGAGAGTTTCTTCGGCGG
ATTGGGCACAGAGATATTCGTGAGCGGCGCTTTGGCCAATCTCTACGAGG
GAACCGGAAACGATGGCGACTGGCGTTTGGTGTTCACCGGCATACCGGTG
ATACTGCACGACAAGGGAAACTCCAAGGCCAGAGCCATACCCAGAGTGAC
GCTGGTTCTGGCGGAGAGGGGCTCCTGCTTCGCCCTGTGGTCGGATCGGA
TTGATAACCTGTCGAACTATCGGATCGCGGGTCCCTCGTTCCACACGATG
TGCCGGTCCAGCAATCATCAGCAGATGATTGGCTTCAGCTTCGATTCCAC
GGATGCGGCACGCGAATTGTGGCAGCACGTGGAGCGTTTGGTCAGCAATC
CAGAGAATGAGGCTCTAACCGTGGCCGGAACCCGCAAGCCGAAGAAACAG
AAGCGCGTCAAGCCGGCTCCCTTGCCACCGAAGTCCCAGATTTCGCATCC
ATGCCAATTCCACCACGTGACCAGTGTGGTCAAGGAGGACAGCGAACGGT
ACTACAGCATGCAGGCCTTCGGACCCCCCAATCCCCAGCAGCATCGTTGA
GTAGGGTCGGGCGCGTGGATCTGGAACACGAGCGCCCTATGGTGGCAGAA
CTGAATCTGCCTCGAAGCCACAACCCAACACAACCACGAAGAAATCCAGG
AAAAACCAACCCTTAGTTCGTATGGCTAGTTATAGATCCATTTGTTATAG
GCCTAAGTTATGCCAATGTGCGATCCGAGTGCGGAACTCGGCCAACACAT
TTATCTGTGATACGATTTAGGCGTCTTTACTTTAGAGAGGGATACTGATA
ACACAATTTGATAAAGAACATTTTTAAACGAAGAACATAGCAAATGAAGC
GAGAGTTTTTGCAAGTTATTAAAACATATTAAGCGATTAACGTTTGTCGA
TAAGCAAGTTTTTTGTAAAACCTTTTCTAATATCACACATATACCCTTAT
GCATAATTATATTCGTACCATATAGTCCTGATATCTATCGAGTAATCTTT
ATGTCCACACTCGAAGGCACTGCGAATGATTTTGATGCCTGAAAAGCTTG
CTTTCCTATCGGATTATTGACTAAGCCCAGACAAAGATACAAAAACAGTT
TTTTGAAATCTATGTATCATATAACACACATAAATATATATGCTATATTA
CACCTATCTATATATTATATATAGCTCTAAGCATTACATCATAGCCACTT
GTCTGTATGAACTTCATATTTTGCCTGTGCAAAACAATCGCGAGAATCAA
ATAAAGCTGACAAAGAGAGCCAATTAAAAAAAAAAAAAAAAAAA

LD08471.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
MESR3-RA 2157 MESR3-RA 36..2113 1..2078 10390 100 Plus
MESR3.a 2125 MESR3.a 481..2081 478..2078 8005 100 Plus
MESR3.b 1648 MESR3.b 70..1640 508..2078 7855 100 Plus
MESR3.a 2125 MESR3.a 36..482 1..447 2235 100 Plus
MESR3.b 1648 MESR3.b 37..69 445..477 165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18658917..18660485 507..2075 7845 100 Plus
chr2L 23010047 chr2L 18615990..18616434 1..445 2210 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18660208..18661779 507..2078 7860 100 Plus
2L 23513712 2L 18617280..18617724 1..445 2225 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18660208..18661779 507..2078 7860 100 Plus
2L 23513712 2L 18617280..18617724 1..445 2225 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:47:49 has no hits.

LD08471.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:48:43 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18615990..18616434 1..445 99 -> Plus
chr2L 18630466..18630497 446..477 96 -> Plus
chr2L 18648322..18648351 478..507 93 -> Plus
chr2L 18658918..18660485 508..2075 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:56:40 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 1..846 505..1350 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:10 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 1..846 505..1350 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:41:03 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RB 1..900 505..1404 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:48 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 1..846 505..1350 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:16:27 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RB 1..900 505..1404 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:40 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 24..2098 1..2075 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:10 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 24..2098 1..2075 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:03 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 25..2099 1..2075 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:48 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 24..2098 1..2075 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:16:27 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
MESR3-RA 25..2099 1..2075 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:43 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18617280..18617724 1..445 100 -> Plus
2L 18631743..18631774 446..477 100 -> Plus
2L 18649598..18649627 478..507 100 -> Plus
2L 18660209..18661776 508..2075 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:43 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18617280..18617724 1..445 100 -> Plus
2L 18631743..18631774 446..477 100 -> Plus
2L 18649598..18649627 478..507 100 -> Plus
2L 18660209..18661776 508..2075 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:43 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18617280..18617724 1..445 100 -> Plus
2L 18631743..18631774 446..477 100 -> Plus
2L 18649598..18649627 478..507 100 -> Plus
2L 18660209..18661776 508..2075 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:03 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18617280..18617724 1..445 100 -> Plus
arm_2L 18631743..18631774 446..477 100 -> Plus
arm_2L 18649598..18649627 478..507 100 -> Plus
arm_2L 18660209..18661776 508..2075 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:07 Download gff for LD08471.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18617280..18617724 1..445 100 -> Plus
2L 18631743..18631774 446..477 100 -> Plus
2L 18649598..18649627 478..507 100 -> Plus
2L 18660209..18661776 508..2075 100   Plus

LD08471.pep Sequence

Translation from 504 to 1349

> LD08471.pep
MMSHQLQQTRRRLGSVSDSAPPSESSEGTGSSLEPRDELILHPDWSAHSH
SSAQRSSAHGTTSLYNASDIDADTISTDTTSNTNLSDYERGQVESFFGGL
GTEIFVSGALANLYEGTGNDGDWRLVFTGIPVILHDKGNSKARAIPRVTL
VLAERGSCFALWSDRIDNLSNYRIAGPSFHTMCRSSNHQQMIGFSFDSTD
AARELWQHVERLVSNPENEALTVAGTRKPKKQKRVKPAPLPPKSQISHPC
QFHHVTSVVKEDSERYYSMQAFGPPNPQQHR*

LD08471.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15063-PA 281 GF15063-PA 1..281 2..281 1372 95.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21123-PA 280 GG21123-PA 1..280 2..281 1476 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11217-PA 278 GH11217-PA 1..278 2..281 1232 90.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
MESR3-PC 281 CG15162-PC 1..281 1..281 1482 100 Plus
MESR3-PB 299 CG15162-PB 1..281 1..281 1482 100 Plus
MESR3-PA 281 CG15162-PA 1..281 1..281 1482 100 Plus
MESR3-PD 280 CG15162-PD 1..280 2..281 1477 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21592-PA 281 GI21592-PA 16..281 14..281 1196 90.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18823-PA 285 GL18823-PA 7..285 7..281 1305 92.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13542-PA 285 GA13542-PA 7..285 7..281 1305 92.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17284-PA 280 GM17284-PA 1..280 2..281 1497 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24146-PA 280 GD24146-PA 1..280 2..281 1497 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17769-PA 278 GJ17769-PA 1..278 2..281 1270 91.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23891-PA 326 GK23891-PA 53..326 7..281 1286 92.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13196-PA 280 GE13196-PA 1..280 2..281 1493 98.9 Plus

LD08471.hyp Sequence

Translation from 504 to 1349

> LD08471.hyp
MMSHQLQQTRRRLGSVSDSAPPSESSEGTGSSLEPRDELILHPDWSAHSH
SSAQRSSAHGTTSLYNASDIDADTISTDTTSNTNLSDYERGQVESFFGGL
GTEIFVSGALANLYEGTGNDGDWRLVFTGIPVILHDKGNSKARAIPRVTL
VLAERGSCFALWSDRIDNLSNYRIAGPSFHTMCRSSNHQQMIGFSFDSTD
AARELWQHVERLVSNPENEALTVAGTRKPKKQKRVKPAPLPPKSQISHPC
QFHHVTSVVKEDSERYYSMQAFGPPNPQQHR*

LD08471.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
MESR3-PC 281 CG15162-PC 1..281 1..281 1482 100 Plus
MESR3-PA 281 CG15162-PA 1..281 1..281 1482 100 Plus
MESR3-PB 299 CG15162-PB 1..281 1..281 1482 100 Plus
MESR3-PD 280 CG15162-PD 1..280 2..281 1477 100 Plus