Clone LD08534 Report

Search the DGRC for LD08534

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:85
Well:34
Vector:pBS SK-
Associated Gene/TranscriptdUTPase-RA
Protein status:LD08534.pep: gold
Preliminary Size:1031
Sequenced Size:822

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4584 2001-01-01 Release 2 assignment
CG4584 2002-11-12 Blastp of sequenced clone
CG4584 2003-01-01 Sim4 clustering to Release 3
dUTPase 2008-04-29 Release 5.5 accounting
dUTPase 2008-08-15 Release 5.9 accounting
dUTPase 2008-12-18 5.12 accounting

Clone Sequence Records

LD08534.complete Sequence

822 bp (822 high quality bases) assembled on 2002-11-12

GenBank Submission: AF160916

> LD08534.complete
CGACGCTGTGTTAAACCGCGTTATTTTCAGACCAGAATTCTGCAAGTAAG
CTGAAAAAAGTCTCTGTACTTTCGAAGCATTCCTGTAATAACTCAATTTG
CTCCAAATGCCATCAACCGATTTCGCCGACATTCCAGCTGCCAAGAAGAT
GAAGATCGACACGTGCGTCCTGCGATTCGCCAAACTCACCGAGAATGCTT
TGGAGCCGGTGAGGGGATCCGCCAAAGCGGCGGGAGTTGACCTGCGCAGC
GCCTACGACGTTGTGGTGCCGGCACGCGGAAAGGCCATTGTCAAGACCGA
TCTGCAAGTGCAGGTTCCGGAGGGCTCCTACGGACGCGTAGCCCCACGAT
CCGGGCTGGCGGTGAAGAACTTCATTGATGTGGGCGCCGGTGTGGTGGAC
GAGGATTATCGCGGCAATCTCGGCGTCGTCCTGTTCAATCACTCAGATGT
TGATTTCGAGGTGAAGCATGGCGACCGCATCGCCCAGTTCATTTGCGAGC
GTATCTTCTATCCGCAACTGGTGATGGTGGACAAACTGGAGGACACCGAG
CGCGGCGAGGCAGGATTCGGTTCCACCGGAGTCAAGGATCTGCCGGCAGC
CAAGGCGCAGAACGGCAACGGAGAAAAGGCTGCCGAACCGGAGGGAGCTG
CTCCGGCTCCTGTTGCTACGTAAACGAGGAACTATTGCCGCATTCTTAAT
CCCTTCATGGTCACTATCAAAGAGTTTCATTCTGTATCCTTAAGTGAAAT
ATGTTAATGTATTGGTATATTTTTATCTATTAAAACCGCAAATCTACGAA
GAAAAAAAAAAAAAAAAAAAAA

LD08534.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-RA 804 dUTPase-RA 1..804 1..804 4020 100 Plus
dUTPase.a 793 dUTPase.a 127..793 138..804 3335 100 Plus
dUTPase.d 785 dUTPase.d 127..785 146..804 3295 100 Plus
dUTPase.a 793 dUTPase.a 43..126 1..84 420 100 Plus
dUTPase.d 785 dUTPase.d 43..126 1..84 420 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11010091..11010891 1..801 4005 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11011335..11012138 1..804 4020 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11011335..11012138 1..804 4020 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:47:52 has no hits.

LD08534.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:48:44 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11010091..11010891 1..801 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:41:19 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 1..567 107..673 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:05:24 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 1..567 107..673 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:41:06 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 1..567 107..673 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:55:28 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 1..567 107..673 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:16:28 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 1..567 107..673 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:24:51 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 1..801 1..801 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:05:24 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 1..801 1..801 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:06 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 24..824 1..801 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:55:29 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 1..801 1..801 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:16:28 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 24..824 1..801 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:44 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11011335..11012135 1..801 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:44 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11011335..11012135 1..801 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:44 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11011335..11012135 1..801 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:06 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11011335..11012135 1..801 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:27:49 Download gff for LD08534.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11011335..11012135 1..801 100   Plus

LD08534.pep Sequence

Translation from 106 to 672

> LD08534.pep
MPSTDFADIPAAKKMKIDTCVLRFAKLTENALEPVRGSAKAAGVDLRSAY
DVVVPARGKAIVKTDLQVQVPEGSYGRVAPRSGLAVKNFIDVGAGVVDED
YRGNLGVVLFNHSDVDFEVKHGDRIAQFICERIFYPQLVMVDKLEDTERG
EAGFGSTGVKDLPAAKAQNGNGEKAAEPEGAAPAPVAT*

LD08534.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15633-PA 212 GF15633-PA 1..175 1..175 831 92 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23694-PA 188 GG23694-PA 1..188 1..188 954 96.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10478-PA 171 GH10478-PA 1..168 17..178 718 83.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-PA 188 CG4584-PA 1..188 1..188 959 100 Plus
dUTPase-PB 174 CG4584-PB 1..174 15..188 887 100 Plus
dUTPase-PD 174 CG4584-PD 1..174 15..188 887 100 Plus
dUTPase-PC 174 CG4584-PC 1..174 15..188 887 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15982-PA 173 GI15982-PA 1..170 15..178 736 84.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19531-PA 187 GL19531-PA 4..187 2..188 831 90.5 Plus
Dper\GL10062-PA 137 GL10062-PA 1..137 51..188 627 91.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18276-PA 187 GA18276-PA 8..187 8..188 839 92.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18802-PA 188 GM18802-PA 1..188 1..188 972 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23751-PA 188 GD23751-PA 1..188 1..188 972 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10455-PA 510 GJ10455-PA 326..507 5..183 689 76.4 Plus
Dvir\GJ10455-PA 510 GJ10455-PA 1..169 1..168 688 79.9 Plus
Dvir\GJ10455-PA 510 GJ10455-PA 166..329 5..168 688 81.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21239-PA 187 GK21239-PA 1..171 1..170 794 89.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\UTPase-PA 188 GE18505-PA 1..188 1..188 971 98.9 Plus

LD08534.hyp Sequence

Translation from 106 to 672

> LD08534.hyp
MPSTDFADIPAAKKMKIDTCVLRFAKLTENALEPVRGSAKAAGVDLRSAY
DVVVPARGKAIVKTDLQVQVPEGSYGRVAPRSGLAVKNFIDVGAGVVDED
YRGNLGVVLFNHSDVDFEVKHGDRIAQFICERIFYPQLVMVDKLEDTERG
EAGFGSTGVKDLPAAKAQNGNGEKAAEPEGAAPAPVAT*

LD08534.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-PA 188 CG4584-PA 1..188 1..188 959 100 Plus
dUTPase-PB 174 CG4584-PB 1..174 15..188 887 100 Plus
dUTPase-PD 174 CG4584-PD 1..174 15..188 887 100 Plus
dUTPase-PC 174 CG4584-PC 1..174 15..188 887 100 Plus