BDGP Sequence Production Resources |
Search the DGRC for LD08549
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 85 |
Well: | 49 |
Vector: | pBS SK- |
Associated Gene/Transcript | RpS3A-RA |
Protein status: | LD08549.pep: gold |
Sequenced Size: | 986 |
Gene | Date | Evidence |
---|---|---|
RpS3A-RA | 2009-01-27 | EST screening |
986 bp assembled on 2009-05-08
GenBank Submission: BT083412.1
> LD08549.complete TTGAACATGGCAGTCGGCAAAAATAAAGGTCTTTCCAAGGGTGGTAAGAA GGGCGGTAAGAAGAAGGTGGTGGACCCGTTTTCTCGCAAGGACTGGTACG ATGTCAAAGCTCCGAATATGTTTCAAACCCGTCAAATCGGTAAAACACTT GTAAACCGCACCCAGGGTCAAAGAATAGCATCGGATTATTTGAAGGGTCG CGTTTTCGAAGTGTCTTTAGCAGACTTGCAAAAGGATATTGATCCAGAAC GTTCTTTTCGCAAGTTCCGTCTTATTGCAGAAGATGTTCAAGACCGTAAT GTGCTCTGTAACTTTCACGGAATGGACTTGACTACGGACAAGTACAGGTC GATGGTTAAAAAGTGGCAAACACTAATTGAAGCTATTGTCGAAGCAAAGA CTGTAGATGGGTACCTCTTGCGAGTGTTTTGTATCGGATTTACTGCCAAG GATCAGCAGTCTCAGCGCAAAACATGTTATGCTCAGCAATCGCAAGTCCG AAAGATTCGTGCTCGCATGACCGACATTATTACTAATGAAGTTAGTGGTG CCGATCTAAAGCAGCTTGTTAACAAGCTGGCCTTGGACTCGATTGCGAAA GATATCGAAAAAAGCTGTCAGCGCATATATCCATTACATGATGTTTACAT TCGTAAAGTAAAGGTATTGAAGAAACCGCGCTTCGATGTCTCAAAGCTTC TGGAATTGCATGGCGATGGCGGTGGCAAATCCGTGGAAGCCGTTGTTTCA TCCGAGGGAGCCGTAATCGACCGCCCTGAAGGTTATGAGCCCCCAGTACA GGAAGCTGTTTAAATTAAATATGAAATGCATATTTTTTTATGTATTGCAT TCAAACATAAAATACATTTCTCTACAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS3A.a | 1720 | RpS3A.a | 76..953 | 1..878 | 4390 | 100 | Plus |
RpS3A-RA | 1279 | RpS3A-RA | 155..1032 | 1..878 | 4390 | 100 | Plus |
RpS3A-RB | 962 | RpS3A-RB | 190..873 | 195..878 | 3420 | 100 | Plus |
RpS3A-RB | 962 | RpS3A-RB | 52..191 | 1..140 | 700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr4 | 86845..87372 | 348..875 | 100 | <- | Minus |
chr4 | 87474..87820 | 1..347 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS3A-RA | 1..807 | 7..813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS3A-RA | 1..807 | 7..813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS3A-RA | 1..807 | 7..813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS3A-RA | 1..807 | 7..813 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS3A-RA | 52..926 | 1..875 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS3A-RA | 52..926 | 1..875 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS3A-RA | 22..896 | 1..875 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS3A-RA | 22..896 | 1..875 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 66211..66738 | 348..875 | 100 | <- | Minus |
4 | 66840..67186 | 1..347 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 66211..66738 | 348..875 | 100 | <- | Minus |
4 | 66840..67186 | 1..347 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 66211..66738 | 348..875 | 100 | <- | Minus |
4 | 66840..67186 | 1..347 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_4 | 87466..87812 | 1..347 | 100 | Minus | |
arm_4 | 86837..87364 | 348..875 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 66840..67186 | 1..347 | 100 | Minus | |
4 | 66211..66738 | 348..875 | 100 | <- | Minus |
Translation from 0 to 812
> LD08549.hyp LNMAVGKNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTL VNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRN VLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAK DQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAK DIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVS SEGAVIDRPEGYEPPVQEAV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS3A-PF | 268 | CG2168-PF | 1..268 | 3..270 | 1373 | 100 | Plus |
RpS3A-PA | 268 | CG2168-PA | 1..268 | 3..270 | 1373 | 100 | Plus |
RpS3A-PB | 218 | CG2168-PB | 14..218 | 66..270 | 1043 | 100 | Plus |
Translation from 0 to 812
> LD08549.pep LNMAVGKNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTL VNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRN VLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAK DQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAK DIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVS SEGAVIDRPEGYEPPVQEAV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19047-PA | 268 | GF19047-PA | 1..268 | 3..270 | 1397 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16465-PA | 268 | GG16465-PA | 1..268 | 3..270 | 1416 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23985-PA | 268 | GH23985-PA | 1..268 | 3..270 | 1387 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS3A-PF | 268 | CG2168-PF | 1..268 | 3..270 | 1373 | 100 | Plus |
RpS3A-PA | 268 | CG2168-PA | 1..268 | 3..270 | 1373 | 100 | Plus |
RpS3A-PB | 218 | CG2168-PB | 14..218 | 66..270 | 1043 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14113-PA | 268 | GI14113-PA | 1..268 | 3..270 | 1398 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18386-PA | 268 | GL18386-PA | 1..268 | 3..270 | 1406 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15280-PA | 268 | GA15280-PA | 1..268 | 3..270 | 1406 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23236-PA | 268 | GM23236-PA | 1..268 | 3..270 | 1415 | 99.6 | Plus |
Dsec\GM23235-PA | 118 | GM23235-PA | 1..114 | 3..116 | 606 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21872-PA | 268 | GJ21872-PA | 1..268 | 3..270 | 1404 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13664-PA | 268 | GK13664-PA | 1..268 | 3..270 | 1395 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\RpS3A-PA | 268 | GE14530-PA | 1..268 | 3..270 | 1411 | 99.6 | Plus |