Clone LD08549 Report

Search the DGRC for LD08549

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:85
Well:49
Vector:pBS SK-
Associated Gene/TranscriptRpS3A-RA
Protein status:LD08549.pep: gold
Sequenced Size:986

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
RpS3A-RA 2009-01-27 EST screening

Clone Sequence Records

LD08549.complete Sequence

986 bp assembled on 2009-05-08

GenBank Submission: BT083412.1

> LD08549.complete
TTGAACATGGCAGTCGGCAAAAATAAAGGTCTTTCCAAGGGTGGTAAGAA
GGGCGGTAAGAAGAAGGTGGTGGACCCGTTTTCTCGCAAGGACTGGTACG
ATGTCAAAGCTCCGAATATGTTTCAAACCCGTCAAATCGGTAAAACACTT
GTAAACCGCACCCAGGGTCAAAGAATAGCATCGGATTATTTGAAGGGTCG
CGTTTTCGAAGTGTCTTTAGCAGACTTGCAAAAGGATATTGATCCAGAAC
GTTCTTTTCGCAAGTTCCGTCTTATTGCAGAAGATGTTCAAGACCGTAAT
GTGCTCTGTAACTTTCACGGAATGGACTTGACTACGGACAAGTACAGGTC
GATGGTTAAAAAGTGGCAAACACTAATTGAAGCTATTGTCGAAGCAAAGA
CTGTAGATGGGTACCTCTTGCGAGTGTTTTGTATCGGATTTACTGCCAAG
GATCAGCAGTCTCAGCGCAAAACATGTTATGCTCAGCAATCGCAAGTCCG
AAAGATTCGTGCTCGCATGACCGACATTATTACTAATGAAGTTAGTGGTG
CCGATCTAAAGCAGCTTGTTAACAAGCTGGCCTTGGACTCGATTGCGAAA
GATATCGAAAAAAGCTGTCAGCGCATATATCCATTACATGATGTTTACAT
TCGTAAAGTAAAGGTATTGAAGAAACCGCGCTTCGATGTCTCAAAGCTTC
TGGAATTGCATGGCGATGGCGGTGGCAAATCCGTGGAAGCCGTTGTTTCA
TCCGAGGGAGCCGTAATCGACCGCCCTGAAGGTTATGAGCCCCCAGTACA
GGAAGCTGTTTAAATTAAATATGAAATGCATATTTTTTTATGTATTGCAT
TCAAACATAAAATACATTTCTCTACAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD08549.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3A.a 1720 RpS3A.a 76..953 1..878 4390 100 Plus
RpS3A-RA 1279 RpS3A-RA 155..1032 1..878 4390 100 Plus
RpS3A-RB 962 RpS3A-RB 190..873 195..878 3420 100 Plus
RpS3A-RB 962 RpS3A-RB 52..191 1..140 700 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 86845..87374 875..346 2650 100 Minus
chr4 1351717 chr4 87472..87820 349..1 1745 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 66208..66740 878..346 2665 100 Minus
4 1348131 4 66838..67186 349..1 1745 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 66208..66740 878..346 2665 100 Minus
4 1331231 4 66838..67186 349..1 1745 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:00:26 has no hits.

LD08549.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:01:23 Download gff for LD08549.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 86845..87372 348..875 100 <- Minus
chr4 87474..87820 1..347 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:53:13 Download gff for LD08549.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RA 1..807 7..813 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:51:36 Download gff for LD08549.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RA 1..807 7..813 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:24:39 Download gff for LD08549.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RA 1..807 7..813 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:53:00 Download gff for LD08549.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RA 1..807 7..813 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-08 10:39:56 Download gff for LD08549.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RA 52..926 1..875 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:51:36 Download gff for LD08549.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RA 52..926 1..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:39 Download gff for LD08549.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RA 22..896 1..875 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:53:00 Download gff for LD08549.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RA 22..896 1..875 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:01:23 Download gff for LD08549.complete
Subject Subject Range Query Range Percent Splice Strand
4 66211..66738 348..875 100 <- Minus
4 66840..67186 1..347 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:01:23 Download gff for LD08549.complete
Subject Subject Range Query Range Percent Splice Strand
4 66211..66738 348..875 100 <- Minus
4 66840..67186 1..347 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:01:23 Download gff for LD08549.complete
Subject Subject Range Query Range Percent Splice Strand
4 66211..66738 348..875 100 <- Minus
4 66840..67186 1..347 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:39 Download gff for LD08549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 87466..87812 1..347 100   Minus
arm_4 86837..87364 348..875 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:42:21 Download gff for LD08549.complete
Subject Subject Range Query Range Percent Splice Strand
4 66840..67186 1..347 100   Minus
4 66211..66738 348..875 100 <- Minus

LD08549.hyp Sequence

Translation from 0 to 812

> LD08549.hyp
LNMAVGKNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTL
VNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRN
VLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAK
DQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAK
DIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVS
SEGAVIDRPEGYEPPVQEAV*

LD08549.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3A-PF 268 CG2168-PF 1..268 3..270 1373 100 Plus
RpS3A-PA 268 CG2168-PA 1..268 3..270 1373 100 Plus
RpS3A-PB 218 CG2168-PB 14..218 66..270 1043 100 Plus

LD08549.pep Sequence

Translation from 0 to 812

> LD08549.pep
LNMAVGKNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTL
VNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRN
VLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAK
DQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAK
DIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVS
SEGAVIDRPEGYEPPVQEAV*

LD08549.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19047-PA 268 GF19047-PA 1..268 3..270 1397 98.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16465-PA 268 GG16465-PA 1..268 3..270 1416 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23985-PA 268 GH23985-PA 1..268 3..270 1387 96.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3A-PF 268 CG2168-PF 1..268 3..270 1373 100 Plus
RpS3A-PA 268 CG2168-PA 1..268 3..270 1373 100 Plus
RpS3A-PB 218 CG2168-PB 14..218 66..270 1043 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14113-PA 268 GI14113-PA 1..268 3..270 1398 98.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18386-PA 268 GL18386-PA 1..268 3..270 1406 98.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15280-PA 268 GA15280-PA 1..268 3..270 1406 98.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23236-PA 268 GM23236-PA 1..268 3..270 1415 99.6 Plus
Dsec\GM23235-PA 118 GM23235-PA 1..114 3..116 606 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21872-PA 268 GJ21872-PA 1..268 3..270 1404 98.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13664-PA 268 GK13664-PA 1..268 3..270 1395 97.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\RpS3A-PA 268 GE14530-PA 1..268 3..270 1411 99.6 Plus