Clone LD08555 Report

Search the DGRC for LD08555

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:85
Well:55
Vector:pBS SK-
Associated Gene/Transcriptpont-RA
Protein status:LD08555.pep: gold
Preliminary Size:1770
Sequenced Size:1688

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4003 2001-01-01 Release 2 assignment
CG4003 2001-10-10 Blastp of sequenced clone
CG4003 2003-01-01 Sim4 clustering to Release 3
pont 2008-04-29 Release 5.5 accounting
pont 2008-08-15 Release 5.9 accounting
pont 2008-12-18 5.12 accounting

Clone Sequence Records

LD08555.complete Sequence

1688 bp (1688 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061095

> LD08555.complete
TCCAACTCGCACGGTCACACTGTAAACAACGGCTGCGGAAACAAAGTGTG
CTTCTAATTTCCAATCAAAACGCCGGCAGAAAAACAAATTTTATCCACGG
CAACGAAACAATAGTTTGTTTGATCGTTGCAACGCTTGACTTCACATTTC
CTCTCCCTCGGGCGAAAAACAGCTGAAACCGGAAACGGATCAGAGTATTA
GCATCAGGCAGGACACGGATTTAGAGGCGCCATGAAGATCGAGGAAGTCA
AGAGCACCGTGCGCACCCAACGCATCGCAGCCCACAGCCATGTGAAGGGA
TTGGGCCTGGACGAGGTTGGAGCTGCCGTGCACAGTGCAGCCGGACTGGT
GGGTCAGAAGGCGGCACGCGAGGCAGCCGGCATTGTGGTGGACCTCATCA
AATCGAAAAAGATGGCCGGACGAGCGCTTCTGCTGGCTGGGCCACCAGGC
ACGGGCAAAACCGCCATTGCTCTGGCCATTGCCCAGGAGCTGGGTAACAA
AGTGCCCTTCTGTCCCATGGTCGGATCGGAGGTATTCAGCAATGAGATCA
AGAAGACCGAGGTGCTAATGGAGAATTTCCGGCGCTCCATTGGTCTGCGC
ATTCGTGAGACCAAAGAGGTGTACGAGGGCGAGGTTACGGAACTCACGCC
CGTGGAAACCGAGAATCCTATGGGTGGCTATGGCAAGACTATCAGCAATG
TCGTCATCGGCTTGAAAACAGCCAAGGGAACCAAGCAGCTCAAGCTGGAT
CCCAGCATCTTTGATGCCTTGCAAAAGGAAAAGGTGGAGGTGGGCGATGT
CATCTACATAGAGGCCAACAGTGGTGCCGTAAAGCGTCAGGGTCGCAGTG
ACACCTTTGCCACTGAGTTTGATCTCGAAACCGAGGAGTATGTGCCGCTG
CCCAAGGGCGATGTCCACAAGAAGAAGGAGGTTATCCAGGATGTTACTCT
GCACGATCTGGATGTGGCCAATGCTCGTCCACAGGGCGGCCAGGATGTGC
TCTCCATGATGGGCCAGCTTATGAAGCCGAAGAAAACTGAAATCACTGAC
AAACTACGCATGGAGATCAACAAGGTGGTAAACAAGTACATTGACCAGGG
CATAGCCGAGCTGGTTCCCGGAGTTCTCTTCATCGATGAAATTCACATGC
TTGATTTGGAGACCTTCACCTACCTACACAAGTCCCTGGAATCTCCCATT
GCACCAATTGTGATTTTTGCCACCAATCGTGGACGCTGTGTTATTCGTGG
CACCACCGACATAGTTTCGCCGCACGGAATTCCGCTAGATCTGCTCGATC
GTTTGCTGATCATCCGCACACTACTCTACTCCACTGCCGACATGGAGCAG
ATAATCAAGTTGCGCGCCCAGACCGAGGGACTGCAGCTGGAGGAGAACGC
ATTTACACGTCTCAGCGAGATTGGAACCAGCTCCACGCTGCGCTACGCCG
TCCAGCTGCTGACCCCGGCTCATCAGATGTGCAAGGTGAACGGACGCAAC
CAGATCAGCAAGGATGATATCGAGGATGTGCACTCGCTCTTCCTTGACGC
CAAGCGCTCCTCGAAGCATTTGTCCGAAAAGAACAATAAGTTTATGTTGT
AAGTTTGACGATTCAAGCTGAATTGTAATTCCATTTGCACGGATTTCCCA
GTAAAAATCAAATAATAAGCAAAAAAAAAAAAAAAAAA

LD08555.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
pont-RA 1762 pont-RA 20..1691 1..1672 8360 100 Plus
pont.a 1836 pont.a 94..1765 1..1672 8360 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6087825..6088872 1..1048 5210 99.8 Plus
chr3R 27901430 chr3R 6089189..6089612 1247..1670 2105 99.8 Plus
chr3R 27901430 chr3R 6088929..6089128 1048..1247 1000 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10262112..10263159 1..1048 5240 100 Plus
3R 32079331 3R 10263476..10263901 1247..1672 2130 100 Plus
3R 32079331 3R 10263216..10263415 1048..1247 1000 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10002943..10003990 1..1048 5240 100 Plus
3R 31820162 3R 10004307..10004732 1247..1672 2130 100 Plus
3R 31820162 3R 10004047..10004246 1048..1247 1000 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:15:04 has no hits.

LD08555.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:15:46 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6087825..6088872 1..1048 99 -> Plus
chr3R 6088930..6089128 1049..1247 100 -> Plus
chr3R 6089190..6089612 1248..1670 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:41:20 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 1..1371 232..1602 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:59 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 1..1371 232..1602 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:11:51 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 1..1371 232..1602 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:58 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 1..1371 232..1602 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:16 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 1..1371 232..1602 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:49 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 1..1670 1..1670 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:59 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 1..1670 1..1670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:11:51 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 1..1659 12..1670 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:58 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 1..1670 1..1670 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:16 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
pont-RA 1..1659 12..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:46 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10262112..10263159 1..1048 100 -> Plus
3R 10263217..10263415 1049..1247 100 -> Plus
3R 10263477..10263899 1248..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:46 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10262112..10263159 1..1048 100 -> Plus
3R 10263217..10263415 1049..1247 100 -> Plus
3R 10263477..10263899 1248..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:46 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10262112..10263159 1..1048 100 -> Plus
3R 10263217..10263415 1049..1247 100 -> Plus
3R 10263477..10263899 1248..1670 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:11:51 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6087834..6088881 1..1048 100 -> Plus
arm_3R 6088939..6089137 1049..1247 100 -> Plus
arm_3R 6089199..6089621 1248..1670 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:07 Download gff for LD08555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10004308..10004730 1248..1670 100   Plus
3R 10002943..10003990 1..1048 100 -> Plus
3R 10004048..10004246 1049..1247 100 -> Plus

LD08555.pep Sequence

Translation from 231 to 1601

> LD08555.pep
MKIEEVKSTVRTQRIAAHSHVKGLGLDEVGAAVHSAAGLVGQKAAREAAG
IVVDLIKSKKMAGRALLLAGPPGTGKTAIALAIAQELGNKVPFCPMVGSE
VFSNEIKKTEVLMENFRRSIGLRIRETKEVYEGEVTELTPVETENPMGGY
GKTISNVVIGLKTAKGTKQLKLDPSIFDALQKEKVEVGDVIYIEANSGAV
KRQGRSDTFATEFDLETEEYVPLPKGDVHKKKEVIQDVTLHDLDVANARP
QGGQDVLSMMGQLMKPKKTEITDKLRMEINKVVNKYIDQGIAELVPGVLF
IDEIHMLDLETFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGI
PLDLLDRLLIIRTLLYSTADMEQIIKLRAQTEGLQLEENAFTRLSEIGTS
STLRYAVQLLTPAHQMCKVNGRNQISKDDIEDVHSLFLDAKRSSKHLSEK
NNKFML*

LD08555.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17460-PA 456 GF17460-PA 1..456 1..456 2360 98.2 Plus
Dana\GF23663-PA 481 GF23663-PA 8..448 5..456 1010 44.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17489-PA 456 GG17489-PA 1..456 1..456 2397 99.8 Plus
Dere\GG16024-PA 481 GG16024-PA 8..448 5..456 1012 45.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19121-PA 456 GH19121-PA 1..456 1..456 2361 98 Plus
Dgri\GH17165-PA 483 GH17165-PA 8..448 5..456 1012 44.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
pont-PA 456 CG4003-PA 1..456 1..456 2285 100 Plus
rept-PB 481 CG9750-PB 8..447 5..455 980 45.3 Plus
rept-PC 481 CG9750-PC 8..447 5..455 980 45.3 Plus
rept-PA 481 CG9750-PA 8..447 5..455 980 45.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23576-PA 456 GI23576-PA 1..456 1..456 2367 98.2 Plus
Dmoj\GI11779-PA 483 GI11779-PA 8..448 5..456 1014 45.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23687-PA 456 GL23687-PA 1..456 1..456 2337 97.1 Plus
Dper\GL20924-PA 482 GL20924-PA 8..448 5..456 1018 45.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17841-PA 456 GA17841-PA 1..456 1..456 2349 97.6 Plus
Dpse\GA22008-PA 480 GA22008-PA 8..448 5..456 1018 45.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23872-PA 456 GM23872-PA 1..456 1..456 2397 99.8 Plus
Dsec\GM15014-PA 481 GM15014-PA 8..448 5..456 1013 45.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18681-PA 456 GD18681-PA 1..456 1..456 2397 99.8 Plus
Dsim\GD14791-PA 481 GD14791-PA 8..448 5..456 1013 45.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23553-PA 456 GJ23553-PA 1..456 1..456 2378 98.7 Plus
Dvir\GJ13482-PA 482 GJ13482-PA 8..448 5..456 1015 45.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12828-PA 456 GK12828-PA 1..456 1..456 2349 96.9 Plus
Dwil\GK20167-PA 480 GK20167-PA 8..448 5..456 1006 44.9 Plus
Dwil\GK25572-PA 132 GK25572-PA 21..100 371..456 145 37.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26023-PA 456 GE26023-PA 1..456 1..456 2392 99.6 Plus
Dyak\GE23076-PA 481 GE23076-PA 8..448 5..456 1012 45.2 Plus
Dyak\GE19593-PA 183 GE19593-PA 1..150 306..456 378 46.4 Plus
Dyak\GE19592-PA 86 GE19592-PA 8..75 5..72 190 54.4 Plus

LD08555.hyp Sequence

Translation from 231 to 1601

> LD08555.hyp
MKIEEVKSTVRTQRIAAHSHVKGLGLDEVGAAVHSAAGLVGQKAAREAAG
IVVDLIKSKKMAGRALLLAGPPGTGKTAIALAIAQELGNKVPFCPMVGSE
VFSNEIKKTEVLMENFRRSIGLRIRETKEVYEGEVTELTPVETENPMGGY
GKTISNVVIGLKTAKGTKQLKLDPSIFDALQKEKVEVGDVIYIEANSGAV
KRQGRSDTFATEFDLETEEYVPLPKGDVHKKKEVIQDVTLHDLDVANARP
QGGQDVLSMMGQLMKPKKTEITDKLRMEINKVVNKYIDQGIAELVPGVLF
IDEIHMLDLETFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGI
PLDLLDRLLIIRTLLYSTADMEQIIKLRAQTEGLQLEENAFTRLSEIGTS
STLRYAVQLLTPAHQMCKVNGRNQISKDDIEDVHSLFLDAKRSSKHLSEK
NNKFML*

LD08555.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
pont-PA 456 CG4003-PA 1..456 1..456 2285 100 Plus
rept-PB 481 CG9750-PB 8..447 5..455 980 45.3 Plus
rept-PC 481 CG9750-PC 8..447 5..455 980 45.3 Plus
rept-PA 481 CG9750-PA 8..447 5..455 980 45.3 Plus