BDGP Sequence Production Resources |
Search the DGRC for LD08622
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 86 |
Well: | 22 |
Vector: | pBS SK- |
Associated Gene/Transcript | nuf-RB |
Protein status: | LD08622.pep: gold |
Preliminary Size: | 2475 |
Sequenced Size: | 2392 |
Gene | Date | Evidence |
---|---|---|
CG7768 | 2001-01-01 | Release 2 assignment |
CG7867 | 2001-01-01 | Release 2 assignment |
CG7867 | 2001-11-09 | Blastp of sequenced clone |
nuf | 2008-04-29 | Release 5.5 accounting |
nuf | 2008-08-15 | Release 5.9 accounting |
nuf | 2008-12-18 | 5.12 accounting |
2392 bp (2392 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069380
> LD08622.complete CTGTAACCGCGTGCGGATGTCAGGAAATTTGTGTCGTCCTTTTTTGGCCT GATTTGATTATTTATTAATCGCCCGAGAGTCTGTGACTTGTGTTCCGGTG TAAAACCGAATAAAAATCATACAAAATTCCGCCGCATCCATTGAGAAAAC CAAATTCCGGCCGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTC TATAGATCATCGAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATAC AACAGAAGACATGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACG ATTATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACA CAGAATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGT CCTTCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAAC TGCGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATT TTGGCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTGCCAGAT GAAGATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAGAAGCCG CCCGACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCATCGCACC GAGGAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCAACAGGA GCACGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGAAGAAGT CCACCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGTGCTCGC GAGGAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAGCATAAG ACTGGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGAACCGAA CCCTCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTGACCAACCAG GCCACCATGCTGACAAATGGCGTGGAGCAGGGTCGCCATCTGCTGAACGG AACACTCAACAGTTTGGCTCAGGAGCTCGAGGAGATGTCACAAGCCCAGC TACAACAGGCCTTCCAGGAAAAGGAGGATGAAAATGTTCGGCTTAAGCAC TATATTGATACCATTCTACTCAACATCGTGGAGAACTATCCTCAATTGCT GGAAGTCAAGCCCATGGAGCGAAAGTAGTGCAGTCTACTGGAAGAATAAA CCAACCCTAGGCACTCGGCAGAGTGTCACAACCACCTAACATTACCTAAA ATTAATAAACTAACTAAACCATACTCTATGTTAACTTTTTAAGCTACACT CTATACATGTATTTATGCCTAACTTAAGTCATAATTTATTTTATAACAAT TTAATGTAGATTTTTAAACCAAAACAACGCAGAGAACACAAAGATTGCAT GTCAAAATGATAAAAAAGTCCTTAATTTGATTAGATTATGTTTTGTATAA AGAGAGTCCAAAATTATGTAAAAGTTTATTTTCCTTCGTTTCTAGTTTGC GTTTTGTATAGTTCGTGTTGTTGATCCATAAAGATATTACTTATAAATAT TGTTAGATTTTAAGTCGTAAAAAATCTTTCACTTATTAATGAAATGGAAC CCAATAATTTATTGATAATTGCCAGAAAATCTAATTGTGAATGTGTATAG CATAAAGAGATTTTATGAACTGTTGATGCTTGACAGGAAATATTTCCAAT TTCGTCATGGCAGCTAAGAAGGTTTTTGCTAGGACAAGTGCTCCATTTTT CAAATCTTTCCATCACATGCATACTTCTTAAATCTTTCTATCCATATTTT GCACTCTCCGAAAAGATCTTCCCTAGTTTGCCTGTAATGTAGTTACAAAA ATCTATCAAAAAATTTGCGTTTATGGTATGGACAATCCCAGGATACAAAG ACGGAGTTTTAGTTTGATGTGAGTCTAAATGAGAGCAATTATCACGAGGA GTTTATCAATTCAGAAGTTATATCTTAATCCACACACATATGTCAATGTA TAGCACAGATAAAACTAATCTTACTCTGCATATAAAACAACATTAAATGG ACATAATGTGCAAACGTTTAGGGATGACACATGATAGCTCCAACGAAAGC GATCCCTAATAGTCTTAGCAACTGAATAACTCAAGCGGTCAACCCTAATT TAGCTATAATAATATCCAAGAAAACTCGATAATCGATGTGTAATCGTTAA TCAAAATTTTATTGCCTTAAACGGATGTTTTAAAAAATGTACTAAGGCTT AGATAACTCTAACAAAAAAGTCCATAAGGTTTAATGACATGCTGCGAAAT ATGGAATTTTAAATGTAATTTACTAGATGCAAGTCGCTGAACTTATATCA AAATAAAAAGAAGAATATTTTATAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nuf-RB | 2554 | nuf-RB | 111..2486 | 1..2376 | 11880 | 100 | Plus |
nuf-RC | 3479 | nuf-RC | 1254..3475 | 155..2376 | 11110 | 100 | Plus |
nuf.c | 2530 | nuf.c | 1196..2525 | 1047..2376 | 6650 | 100 | Plus |
nuf.c | 2530 | nuf.c | 111..1159 | 1..1049 | 5245 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 14222026..14223350 | 1047..2373 | 6510 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 14220757..14221215 | 442..900 | 2280 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 14195562..14195715 | 1..154 | 770 | 100 | Plus |
chr3L | 24539361 | chr3L | 14221280..14221428 | 901..1049 | 685 | 97.3 | Plus |
chr3L | 24539361 | chr3L | 14220274..14220409 | 308..443 | 680 | 100 | Plus |
chr3L | 24539361 | chr3L | 14203217..14203333 | 192..308 | 585 | 100 | Plus |
chr3L | 24539361 | chr3L | 14202324..14202362 | 155..193 | 195 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 14231924..14233253 | 1047..2376 | 6650 | 100 | Plus |
3L | 28110227 | 3L | 14230654..14231112 | 442..900 | 2295 | 100 | Plus |
3L | 28110227 | 3L | 14205432..14205585 | 1..154 | 770 | 100 | Plus |
3L | 28110227 | 3L | 14231177..14231325 | 901..1049 | 745 | 100 | Plus |
3L | 28110227 | 3L | 14230175..14230310 | 308..443 | 680 | 100 | Plus |
3L | 28110227 | 3L | 14213087..14213203 | 192..308 | 585 | 100 | Plus |
3L | 28110227 | 3L | 14212194..14212232 | 155..193 | 195 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 14225024..14226353 | 1047..2376 | 6650 | 100 | Plus |
3L | 28103327 | 3L | 14223754..14224212 | 442..900 | 2295 | 100 | Plus |
3L | 28103327 | 3L | 14198532..14198685 | 1..154 | 770 | 100 | Plus |
3L | 28103327 | 3L | 14224277..14224425 | 901..1049 | 745 | 100 | Plus |
3L | 28103327 | 3L | 14223275..14223410 | 308..443 | 680 | 100 | Plus |
3L | 28103327 | 3L | 14206187..14206303 | 192..308 | 585 | 100 | Plus |
3L | 28103327 | 3L | 14205294..14205332 | 155..193 | 195 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 1456..1703 | 1400..1638 | 217 | 59.4 | Plus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 34..209 | 1638..1459 | 169 | 59.6 | Minus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 131..238 | 1521..1629 | 119 | 59.1 | Plus |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 2703..2760 | 1227..1284 | 119 | 67.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 14195562..14195715 | 1..154 | 100 | -> | Plus |
chr3L | 14202324..14202362 | 155..193 | 100 | -> | Plus |
chr3L | 14203219..14203333 | 194..308 | 100 | -> | Plus |
chr3L | 14220275..14220409 | 309..443 | 100 | -> | Plus |
chr3L | 14220759..14221215 | 444..900 | 99 | -> | Plus |
chr3L | 14221280..14221428 | 901..1049 | 97 | -> | Plus |
chr3L | 14222029..14223350 | 1050..2373 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RA | 481..1509 | 149..1178 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RA | 481..1509 | 149..1178 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RC | 481..1509 | 149..1178 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RA | 481..1509 | 149..1178 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RC | 481..1509 | 149..1178 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RB | 1..2373 | 1..2373 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RB | 1..2373 | 1..2373 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RB | 1..2373 | 1..2373 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RB | 1..2373 | 1..2373 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RB | 1..2373 | 1..2373 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14231177..14231325 | 901..1049 | 100 | -> | Plus |
3L | 14230656..14231112 | 444..900 | 100 | -> | Plus |
3L | 14205432..14205585 | 1..154 | 100 | -> | Plus |
3L | 14212194..14212232 | 155..193 | 100 | -> | Plus |
3L | 14213089..14213203 | 194..308 | 100 | -> | Plus |
3L | 14230176..14230310 | 309..443 | 100 | -> | Plus |
3L | 14231927..14233250 | 1050..2373 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14231177..14231325 | 901..1049 | 100 | -> | Plus |
3L | 14230656..14231112 | 444..900 | 100 | -> | Plus |
3L | 14205432..14205585 | 1..154 | 100 | -> | Plus |
3L | 14212194..14212232 | 155..193 | 100 | -> | Plus |
3L | 14213089..14213203 | 194..308 | 100 | -> | Plus |
3L | 14230176..14230310 | 309..443 | 100 | -> | Plus |
3L | 14231927..14233250 | 1050..2373 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14231177..14231325 | 901..1049 | 100 | -> | Plus |
3L | 14230656..14231112 | 444..900 | 100 | -> | Plus |
3L | 14205432..14205585 | 1..154 | 100 | -> | Plus |
3L | 14212194..14212232 | 155..193 | 100 | -> | Plus |
3L | 14213089..14213203 | 194..308 | 100 | -> | Plus |
3L | 14230176..14230310 | 309..443 | 100 | -> | Plus |
3L | 14231927..14233250 | 1050..2373 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 14224277..14224425 | 901..1049 | 100 | -> | Plus |
arm_3L | 14198532..14198685 | 1..154 | 100 | -> | Plus |
arm_3L | 14205294..14205332 | 155..193 | 100 | -> | Plus |
arm_3L | 14206189..14206303 | 194..308 | 100 | -> | Plus |
arm_3L | 14223276..14223410 | 309..443 | 100 | -> | Plus |
arm_3L | 14223756..14224212 | 444..900 | 100 | -> | Plus |
arm_3L | 14225027..14226350 | 1050..2373 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14223756..14224212 | 444..900 | 100 | -> | Plus |
3L | 14224277..14224425 | 901..1049 | 100 | -> | Plus |
3L | 14225027..14226350 | 1050..2373 | 100 | Plus | |
3L | 14198532..14198685 | 1..154 | 100 | -> | Plus |
3L | 14205294..14205332 | 155..193 | 100 | -> | Plus |
3L | 14206189..14206303 | 194..308 | 100 | -> | Plus |
3L | 14223276..14223410 | 309..443 | 100 | -> | Plus |
Translation from 260 to 1177
> LD08622.pep MYSDISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQA RYHMLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIR ATEIEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEE QAQALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEE LHQELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLN SLAQELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVK PMERK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24596-PA | 525 | GF24596-PA | 194..525 | 1..305 | 1468 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15679-PA | 526 | GG15679-PA | 222..526 | 1..305 | 1404 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17096-PA | 544 | GH17096-PA | 213..544 | 1..305 | 1309 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nuf-PB | 305 | CG33991-PB | 1..305 | 1..305 | 1522 | 100 | Plus |
nuf-PA | 502 | CG33991-PA | 198..502 | 1..305 | 1522 | 100 | Plus |
nuf-PC | 502 | CG33991-PC | 198..502 | 1..305 | 1522 | 100 | Plus |
nuf-PL | 515 | CG33991-PL | 198..515 | 1..305 | 1498 | 95.9 | Plus |
nuf-PH | 529 | CG33991-PH | 212..529 | 1..305 | 1498 | 95.9 | Plus |
nuf-PG | 530 | CG33991-PG | 213..530 | 1..305 | 1498 | 95.9 | Plus |
nuf-PM | 318 | CG33991-PM | 1..318 | 1..305 | 1498 | 95.9 | Plus |
nuf-PD | 316 | CG33991-PD | 12..316 | 1..305 | 1445 | 96.1 | Plus |
nuf-PF | 528 | CG33991-PF | 224..528 | 1..305 | 1437 | 95.7 | Plus |
nuf-PE | 528 | CG33991-PE | 224..528 | 1..305 | 1437 | 95.7 | Plus |
nuf-PK | 541 | CG33991-PK | 224..541 | 1..305 | 1413 | 91.8 | Plus |
nuf-PJ | 541 | CG33991-PJ | 224..541 | 1..305 | 1413 | 91.8 | Plus |
lva-PD | 2779 | CG6450-PD | 1336..1535 | 18..240 | 160 | 22.4 | Plus |
lva-PC | 2779 | CG6450-PC | 1336..1535 | 18..240 | 160 | 22.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11698-PA | 533 | GI11698-PA | 202..533 | 1..305 | 1295 | 85.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21004-PA | 756 | GL21004-PA | 452..756 | 1..305 | 1352 | 92.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23801-PA | 639 | GA23801-PA | 335..639 | 1..305 | 1251 | 88.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25461-PA | 526 | GM25461-PA | 222..526 | 1..305 | 1388 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14486-PA | 98 | GD14486-PA | 1..98 | 208..305 | 488 | 98 | Plus |
Dsim\GD14485-PA | 66 | GD14485-PA | 1..66 | 1..72 | 319 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11373-PA | 531 | GJ11373-PA | 200..531 | 1..305 | 1384 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12678-PA | 781 | GK12678-PA | 493..781 | 17..305 | 1318 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22009-PA | 527 | GE22009-PA | 223..527 | 1..305 | 1404 | 95.7 | Plus |
Translation from 260 to 1177
> LD08622.hyp MYSDISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQA RYHMLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIR ATEIEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEE QAQALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEE LHQELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLN SLAQELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVK PMERK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nuf-PB | 305 | CG33991-PB | 1..305 | 1..305 | 1522 | 100 | Plus |
nuf-PA | 502 | CG33991-PA | 198..502 | 1..305 | 1522 | 100 | Plus |
nuf-PC | 502 | CG33991-PC | 198..502 | 1..305 | 1522 | 100 | Plus |
nuf-PM | 318 | CG33991-PM | 1..318 | 1..305 | 1498 | 95.9 | Plus |
nuf-PL | 515 | CG33991-PL | 198..515 | 1..305 | 1498 | 95.9 | Plus |