Clone LD08622 Report

Search the DGRC for LD08622

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:86
Well:22
Vector:pBS SK-
Associated Gene/Transcriptnuf-RB
Protein status:LD08622.pep: gold
Preliminary Size:2475
Sequenced Size:2392

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7768 2001-01-01 Release 2 assignment
CG7867 2001-01-01 Release 2 assignment
CG7867 2001-11-09 Blastp of sequenced clone
nuf 2008-04-29 Release 5.5 accounting
nuf 2008-08-15 Release 5.9 accounting
nuf 2008-12-18 5.12 accounting

Clone Sequence Records

LD08622.complete Sequence

2392 bp (2392 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069380

> LD08622.complete
CTGTAACCGCGTGCGGATGTCAGGAAATTTGTGTCGTCCTTTTTTGGCCT
GATTTGATTATTTATTAATCGCCCGAGAGTCTGTGACTTGTGTTCCGGTG
TAAAACCGAATAAAAATCATACAAAATTCCGCCGCATCCATTGAGAAAAC
CAAATTCCGGCCGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTC
TATAGATCATCGAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATAC
AACAGAAGACATGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACG
ATTATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACA
CAGAATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGT
CCTTCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAAC
TGCGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATT
TTGGCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTGCCAGAT
GAAGATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAGAAGCCG
CCCGACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCATCGCACC
GAGGAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCAACAGGA
GCACGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGAAGAAGT
CCACCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGTGCTCGC
GAGGAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAGCATAAG
ACTGGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGAACCGAA
CCCTCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTGACCAACCAG
GCCACCATGCTGACAAATGGCGTGGAGCAGGGTCGCCATCTGCTGAACGG
AACACTCAACAGTTTGGCTCAGGAGCTCGAGGAGATGTCACAAGCCCAGC
TACAACAGGCCTTCCAGGAAAAGGAGGATGAAAATGTTCGGCTTAAGCAC
TATATTGATACCATTCTACTCAACATCGTGGAGAACTATCCTCAATTGCT
GGAAGTCAAGCCCATGGAGCGAAAGTAGTGCAGTCTACTGGAAGAATAAA
CCAACCCTAGGCACTCGGCAGAGTGTCACAACCACCTAACATTACCTAAA
ATTAATAAACTAACTAAACCATACTCTATGTTAACTTTTTAAGCTACACT
CTATACATGTATTTATGCCTAACTTAAGTCATAATTTATTTTATAACAAT
TTAATGTAGATTTTTAAACCAAAACAACGCAGAGAACACAAAGATTGCAT
GTCAAAATGATAAAAAAGTCCTTAATTTGATTAGATTATGTTTTGTATAA
AGAGAGTCCAAAATTATGTAAAAGTTTATTTTCCTTCGTTTCTAGTTTGC
GTTTTGTATAGTTCGTGTTGTTGATCCATAAAGATATTACTTATAAATAT
TGTTAGATTTTAAGTCGTAAAAAATCTTTCACTTATTAATGAAATGGAAC
CCAATAATTTATTGATAATTGCCAGAAAATCTAATTGTGAATGTGTATAG
CATAAAGAGATTTTATGAACTGTTGATGCTTGACAGGAAATATTTCCAAT
TTCGTCATGGCAGCTAAGAAGGTTTTTGCTAGGACAAGTGCTCCATTTTT
CAAATCTTTCCATCACATGCATACTTCTTAAATCTTTCTATCCATATTTT
GCACTCTCCGAAAAGATCTTCCCTAGTTTGCCTGTAATGTAGTTACAAAA
ATCTATCAAAAAATTTGCGTTTATGGTATGGACAATCCCAGGATACAAAG
ACGGAGTTTTAGTTTGATGTGAGTCTAAATGAGAGCAATTATCACGAGGA
GTTTATCAATTCAGAAGTTATATCTTAATCCACACACATATGTCAATGTA
TAGCACAGATAAAACTAATCTTACTCTGCATATAAAACAACATTAAATGG
ACATAATGTGCAAACGTTTAGGGATGACACATGATAGCTCCAACGAAAGC
GATCCCTAATAGTCTTAGCAACTGAATAACTCAAGCGGTCAACCCTAATT
TAGCTATAATAATATCCAAGAAAACTCGATAATCGATGTGTAATCGTTAA
TCAAAATTTTATTGCCTTAAACGGATGTTTTAAAAAATGTACTAAGGCTT
AGATAACTCTAACAAAAAAGTCCATAAGGTTTAATGACATGCTGCGAAAT
ATGGAATTTTAAATGTAATTTACTAGATGCAAGTCGCTGAACTTATATCA
AAATAAAAAGAAGAATATTTTATAAAAAAAAAAAAAAAAAAA

LD08622.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RB 2554 nuf-RB 111..2486 1..2376 11880 100 Plus
nuf-RC 3479 nuf-RC 1254..3475 155..2376 11110 100 Plus
nuf.c 2530 nuf.c 1196..2525 1047..2376 6650 100 Plus
nuf.c 2530 nuf.c 111..1159 1..1049 5245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14222026..14223350 1047..2373 6510 99.5 Plus
chr3L 24539361 chr3L 14220757..14221215 442..900 2280 99.8 Plus
chr3L 24539361 chr3L 14195562..14195715 1..154 770 100 Plus
chr3L 24539361 chr3L 14221280..14221428 901..1049 685 97.3 Plus
chr3L 24539361 chr3L 14220274..14220409 308..443 680 100 Plus
chr3L 24539361 chr3L 14203217..14203333 192..308 585 100 Plus
chr3L 24539361 chr3L 14202324..14202362 155..193 195 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14231924..14233253 1047..2376 6650 100 Plus
3L 28110227 3L 14230654..14231112 442..900 2295 100 Plus
3L 28110227 3L 14205432..14205585 1..154 770 100 Plus
3L 28110227 3L 14231177..14231325 901..1049 745 100 Plus
3L 28110227 3L 14230175..14230310 308..443 680 100 Plus
3L 28110227 3L 14213087..14213203 192..308 585 100 Plus
3L 28110227 3L 14212194..14212232 155..193 195 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14225024..14226353 1047..2376 6650 100 Plus
3L 28103327 3L 14223754..14224212 442..900 2295 100 Plus
3L 28103327 3L 14198532..14198685 1..154 770 100 Plus
3L 28103327 3L 14224277..14224425 901..1049 745 100 Plus
3L 28103327 3L 14223275..14223410 308..443 680 100 Plus
3L 28103327 3L 14206187..14206303 192..308 585 100 Plus
3L 28103327 3L 14205294..14205332 155..193 195 100 Plus
Blast to na_te.dros performed 2019-03-16 10:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1456..1703 1400..1638 217 59.4 Plus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 34..209 1638..1459 169 59.6 Minus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 131..238 1521..1629 119 59.1 Plus
McClintock 6450 McClintock McCLINTOCK 6450bp 2703..2760 1227..1284 119 67.2 Plus

LD08622.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:17:27 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14195562..14195715 1..154 100 -> Plus
chr3L 14202324..14202362 155..193 100 -> Plus
chr3L 14203219..14203333 194..308 100 -> Plus
chr3L 14220275..14220409 309..443 100 -> Plus
chr3L 14220759..14221215 444..900 99 -> Plus
chr3L 14221280..14221428 901..1049 97 -> Plus
chr3L 14222029..14223350 1050..2373 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:03:32 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RA 481..1509 149..1178 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:11 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RA 481..1509 149..1178 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:39:02 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 481..1509 149..1178 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:49 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RA 481..1509 149..1178 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:32 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 481..1509 149..1178 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:03:31 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RB 1..2373 1..2373 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:11 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RB 1..2373 1..2373 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:02 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RB 1..2373 1..2373 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:49 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RB 1..2373 1..2373 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:32 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RB 1..2373 1..2373 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:27 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14231177..14231325 901..1049 100 -> Plus
3L 14230656..14231112 444..900 100 -> Plus
3L 14205432..14205585 1..154 100 -> Plus
3L 14212194..14212232 155..193 100 -> Plus
3L 14213089..14213203 194..308 100 -> Plus
3L 14230176..14230310 309..443 100 -> Plus
3L 14231927..14233250 1050..2373 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:27 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14231177..14231325 901..1049 100 -> Plus
3L 14230656..14231112 444..900 100 -> Plus
3L 14205432..14205585 1..154 100 -> Plus
3L 14212194..14212232 155..193 100 -> Plus
3L 14213089..14213203 194..308 100 -> Plus
3L 14230176..14230310 309..443 100 -> Plus
3L 14231927..14233250 1050..2373 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:27 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14231177..14231325 901..1049 100 -> Plus
3L 14230656..14231112 444..900 100 -> Plus
3L 14205432..14205585 1..154 100 -> Plus
3L 14212194..14212232 155..193 100 -> Plus
3L 14213089..14213203 194..308 100 -> Plus
3L 14230176..14230310 309..443 100 -> Plus
3L 14231927..14233250 1050..2373 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:02 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14224277..14224425 901..1049 100 -> Plus
arm_3L 14198532..14198685 1..154 100 -> Plus
arm_3L 14205294..14205332 155..193 100 -> Plus
arm_3L 14206189..14206303 194..308 100 -> Plus
arm_3L 14223276..14223410 309..443 100 -> Plus
arm_3L 14223756..14224212 444..900 100 -> Plus
arm_3L 14225027..14226350 1050..2373 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:08 Download gff for LD08622.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14223756..14224212 444..900 100 -> Plus
3L 14224277..14224425 901..1049 100 -> Plus
3L 14225027..14226350 1050..2373 100   Plus
3L 14198532..14198685 1..154 100 -> Plus
3L 14205294..14205332 155..193 100 -> Plus
3L 14206189..14206303 194..308 100 -> Plus
3L 14223276..14223410 309..443 100 -> Plus

LD08622.pep Sequence

Translation from 260 to 1177

> LD08622.pep
MYSDISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQA
RYHMLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIR
ATEIEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEE
QAQALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEE
LHQELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLN
SLAQELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVK
PMERK*

LD08622.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24596-PA 525 GF24596-PA 194..525 1..305 1468 88.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15679-PA 526 GG15679-PA 222..526 1..305 1404 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17096-PA 544 GH17096-PA 213..544 1..305 1309 86.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-PB 305 CG33991-PB 1..305 1..305 1522 100 Plus
nuf-PA 502 CG33991-PA 198..502 1..305 1522 100 Plus
nuf-PC 502 CG33991-PC 198..502 1..305 1522 100 Plus
nuf-PL 515 CG33991-PL 198..515 1..305 1498 95.9 Plus
nuf-PH 529 CG33991-PH 212..529 1..305 1498 95.9 Plus
nuf-PG 530 CG33991-PG 213..530 1..305 1498 95.9 Plus
nuf-PM 318 CG33991-PM 1..318 1..305 1498 95.9 Plus
nuf-PD 316 CG33991-PD 12..316 1..305 1445 96.1 Plus
nuf-PF 528 CG33991-PF 224..528 1..305 1437 95.7 Plus
nuf-PE 528 CG33991-PE 224..528 1..305 1437 95.7 Plus
nuf-PK 541 CG33991-PK 224..541 1..305 1413 91.8 Plus
nuf-PJ 541 CG33991-PJ 224..541 1..305 1413 91.8 Plus
lva-PD 2779 CG6450-PD 1336..1535 18..240 160 22.4 Plus
lva-PC 2779 CG6450-PC 1336..1535 18..240 160 22.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11698-PA 533 GI11698-PA 202..533 1..305 1295 85.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21004-PA 756 GL21004-PA 452..756 1..305 1352 92.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23801-PA 639 GA23801-PA 335..639 1..305 1251 88.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25461-PA 526 GM25461-PA 222..526 1..305 1388 95.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14486-PA 98 GD14486-PA 1..98 208..305 488 98 Plus
Dsim\GD14485-PA 66 GD14485-PA 1..66 1..72 319 90.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11373-PA 531 GJ11373-PA 200..531 1..305 1384 87.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12678-PA 781 GK12678-PA 493..781 17..305 1318 93.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22009-PA 527 GE22009-PA 223..527 1..305 1404 95.7 Plus

LD08622.hyp Sequence

Translation from 260 to 1177

> LD08622.hyp
MYSDISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQA
RYHMLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIR
ATEIEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEE
QAQALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEE
LHQELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLN
SLAQELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVK
PMERK*

LD08622.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-PB 305 CG33991-PB 1..305 1..305 1522 100 Plus
nuf-PA 502 CG33991-PA 198..502 1..305 1522 100 Plus
nuf-PC 502 CG33991-PC 198..502 1..305 1522 100 Plus
nuf-PM 318 CG33991-PM 1..318 1..305 1498 95.9 Plus
nuf-PL 515 CG33991-PL 198..515 1..305 1498 95.9 Plus