Clone LD08638 Report

Search the DGRC for LD08638

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:86
Well:38
Vector:pBS SK-
Associated Gene/Transcriptmre11-RA
Protein status:LD08638.pep: gold
Preliminary Size:1994
Sequenced Size:1997

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16928 2000-02-14 Blastp of sequenced clone
CG16928 2001-01-01 Release 2 assignment
CG16928 2003-01-01 Sim4 clustering to Release 3
mre11 2008-04-29 Release 5.5 accounting
mre11 2008-08-15 Release 5.9 accounting
mre11 2008-12-18 5.12 accounting

Clone Sequence Records

LD08638.complete Sequence

1997 bp (1997 high quality bases) assembled on 2000-02-14

GenBank Submission: AF132144

> LD08638.complete
TGGCGAAATAGGGCGTAATATCTTATTTTGTGAATTTTTAAGTTGCCCAG
TTAACCATGAATGGCACCACGACAGCAGAGCAGGATGCTGACAACGTGAT
TCGCATCCTGGTGGCTACCGACAACCACCTGGGCTATGGCGAAAAAGACG
CGGTGCGCGGCGAGGACAGTTTCACGGCCTTCGAGGAGATCCTGGAACTG
GCGGTGTCCGAGGATGTGGACATGATTCTGCTGGGAGGTGACCTCTTCCA
CGACGCCGTGCCCAGCCAGAATGCGTTGCACAAATGCATTGAGCTCCTGC
GGCGCTACACATTCGGTGATCGTCCTGTTTCCCTGGAGATTCTCAGCGAC
CAGGGGCAATGCTTCCACAATGCCGTTAACCAGTCGGTGAATTACGAGGA
TCCCAATCTGAACATTGCCATTCCAGTATTCTCTATTCATGGCAATCACG
ACGATCCCAGTGGCTTCGGTCGTTTAAGTTCTCTGGATTTGCTGAGCACC
TCGGGACTGGTTAACTATTTTGGTCGGTGGACCGATCTAACCCAGGTGGA
GATCAGCCCCGTCCTGATGCGCAAGGGAGAGAGCCAATTGGCTTTGTACG
GACTTAGCCACATCCACGACGGCCGACTGGCAAGGCTTATCAAGGATTTT
AAGGTGAAGTTTAACTGTCCCGAGAACGTTGCTAATGGCGAAGACGGTAA
TGAGTCCAAAGAGGAGGAGGATTGGTTCCATCTGTTAGTGGTACATCAGA
ACCGCGCCGATCGGGGACCAAAGAACTATCTACCTGAGGACCTGTTGCCA
TCGTTTTTGCACCTGGTGATTTGGGGTCACGAACACGATTGCCGCATCGA
GCCAGAGGAGAATGCCAAAAAGCGCTTCTATGTCTCTCAGCCGGGCTCTT
CGGTGCCCACCTCCTTGTCCGAGGGTGAGGCCAAGAAAAAGCACGTCGGC
CTGCTCGAGATCTACAAGGGAAAATTCAAGCTTAAGCCGCTTCCGCTGGA
GACTGTGCGGCCTTTCGTCTATGAATCCGTCGTACTGGCCGACCATGCCG
ACGAATTAGGCCTTGTCGAAGGTGATGCCTCTACCAAGGTTTTTAAATTC
GCCCAGGAACGAGTGGAGGCAATGATCGAGCGGGCGGTAGCCCAACACAC
CGGTCATCCTAAGCAGCCAACGCTACCGCTCATTCGGTTGCGTCTCCTCT
ACACAGATGAGTCCTGCATGTTTAATGCGATTCGGTTTGGAGAGATGTTG
AGCACTCGGGTGGCCAACGTTCAGGATGTGGTGCAGTTCAGTAAGGTGGT
TAAGCGTACCAAAACGGAGGCTGTCAATCTGGACAAAGAGGCATTGCGAC
GTGCACTGGAAGCGGATAATGCCACTCGCGTGGAGGAGTTAGTGGATCGA
TATTTCGAAGAGGCCAAGTCGAATAAGCCTCTCAAGTTATTCCACTCAAA
GGCTCTTGCAGAGATGACCTATCGACTGTTGGAGCAAAGGGATGCCGATG
CAGCTGAAAATATTGTCAAGTTCTACAAGGAAAAGGCAGTTGATCACTTG
ATGGAAGCAATGCCCAACGACGAGAACATCGATGAGGAGCTTGAAAGATT
TAGGGCGCTTCACAAGCATGGGGATCTACTGAAAATGCTTGACACACAGG
GCTTGAAGGTGAAGAAAGAAGAAAAGTCCATGTCTGTGTTGGGTAGCGAA
GTGAACGTCTCCACTGCCCCCGCGACGGGACGAGGAGCTGCTAGGGGTCG
TGGAACTGCACGAACTCGTGCAGGTGCCACAGCTGCCACACGTGGAAAGG
GCCAGCTAGATGTGACAGTCAGTAGTACGCGAACTTCCGGCAGGCAACAA
ACGCTCCTTAGTAGCCTTATGGGCTCTCGTAATACTGCCAGCTATGTTAT
ATCGGATGATTCCGATTGATTTGAATTCCGGAGACCTTGTTTACCACGAA
GTTTAATAAACAGCAGTTTTCCTTTTTACAAAAAAAAAAAAAAAAAA

LD08638.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
mre11-RA 2248 mre11-RA 151..2131 1..1981 9890 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11281197..11282272 284..1359 5335 99.7 Plus
chr2L 23010047 chr2L 11282547..11282856 1520..1829 1550 100 Plus
chr2L 23010047 chr2L 11280862..11281144 1..283 1400 99.6 Plus
chr2L 23010047 chr2L 11282330..11282494 1358..1522 825 100 Plus
chr2L 23010047 chr2L 11282923..11283073 1829..1979 755 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11282459..11283534 284..1359 5365 99.9 Plus
2L 23513712 2L 11283809..11284118 1520..1829 1550 100 Plus
2L 23513712 2L 11282124..11282406 1..283 1415 100 Plus
2L 23513712 2L 11283592..11283756 1358..1522 825 100 Plus
2L 23513712 2L 11284185..11284337 1829..1981 765 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11282459..11283534 284..1359 5365 99.9 Plus
2L 23513712 2L 11283809..11284118 1520..1829 1550 100 Plus
2L 23513712 2L 11282124..11282406 1..283 1415 100 Plus
2L 23513712 2L 11283592..11283756 1358..1522 825 100 Plus
2L 23513712 2L 11284185..11284337 1829..1981 765 100 Plus
Blast to na_te.dros performed 2019-03-15 13:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 6521..6590 959..891 113 66.2 Minus

LD08638.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:20:31 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11280862..11281144 1..283 99 -> Plus
chr2L 11281197..11282271 284..1358 99 -> Plus
chr2L 11282331..11282491 1359..1519 100 -> Plus
chr2L 11282547..11282856 1520..1829 100 -> Plus
chr2L 11282924..11283073 1830..1979 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:41:25 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
mre11-RA 1..1863 57..1919 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:34:47 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
mre11-RA 1..1863 57..1919 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:01:02 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
mre11-RA 1..1863 57..1919 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:10:29 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
mre11-RA 1..1863 57..1919 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:28:15 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
mre11-RA 1..1863 57..1919 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:37:25 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
mre11-RA 32..2010 1..1979 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:34:47 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
mre11-RA 32..2010 1..1979 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:01:02 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
mre11-RA 35..2013 1..1979 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:10:29 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
mre11-RA 32..2010 1..1979 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:28:15 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
mre11-RA 35..2013 1..1979 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:31 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11284186..11284335 1830..1979 100   Plus
2L 11283593..11283753 1359..1519 100 -> Plus
2L 11283809..11284118 1520..1829 100 -> Plus
2L 11282124..11282406 1..283 100 -> Plus
2L 11282459..11283533 284..1358 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:31 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11284186..11284335 1830..1979 100   Plus
2L 11283593..11283753 1359..1519 100 -> Plus
2L 11283809..11284118 1520..1829 100 -> Plus
2L 11282124..11282406 1..283 100 -> Plus
2L 11282459..11283533 284..1358 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:20:31 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11284186..11284335 1830..1979 100   Plus
2L 11283593..11283753 1359..1519 100 -> Plus
2L 11283809..11284118 1520..1829 100 -> Plus
2L 11282124..11282406 1..283 100 -> Plus
2L 11282459..11283533 284..1358 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:01:02 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11282124..11282406 1..283 100 -> Plus
arm_2L 11282459..11283533 284..1358 99 -> Plus
arm_2L 11283593..11283753 1359..1519 100 -> Plus
arm_2L 11283809..11284118 1520..1829 100 -> Plus
arm_2L 11284186..11284335 1830..1979 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:46:59 Download gff for LD08638.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11282124..11282406 1..283 100 -> Plus
2L 11282459..11283533 284..1358 99 -> Plus
2L 11283593..11283753 1359..1519 100 -> Plus
2L 11283809..11284118 1520..1829 100 -> Plus
2L 11284186..11284335 1830..1979 100   Plus

LD08638.pep Sequence

Translation from 56 to 1918

> LD08638.pep
MNGTTTAEQDADNVIRILVATDNHLGYGEKDAVRGEDSFTAFEEILELAV
SEDVDMILLGGDLFHDAVPSQNALHKCIELLRRYTFGDRPVSLEILSDQG
QCFHNAVNQSVNYEDPNLNIAIPVFSIHGNHDDPSGFGRLSSLDLLSTSG
LVNYFGRWTDLTQVEISPVLMRKGESQLALYGLSHIHDGRLARLIKDFKV
KFNCPENVANGEDGNESKEEEDWFHLLVVHQNRADRGPKNYLPEDLLPSF
LHLVIWGHEHDCRIEPEENAKKRFYVSQPGSSVPTSLSEGEAKKKHVGLL
EIYKGKFKLKPLPLETVRPFVYESVVLADHADELGLVEGDASTKVFKFAQ
ERVEAMIERAVAQHTGHPKQPTLPLIRLRLLYTDESCMFNAIRFGEMLST
RVANVQDVVQFSKVVKRTKTEAVNLDKEALRRALEADNATRVEELVDRYF
EEAKSNKPLKLFHSKALAEMTYRLLEQRDADAAENIVKFYKEKAVDHLME
AMPNDENIDEELERFRALHKHGDLLKMLDTQGLKVKKEEKSMSVLGSEVN
VSTAPATGRGAARGRGTARTRAGATAATRGKGQLDVTVSSTRTSGRQQTL
LSSLMGSRNTASYVISDDSD*

LD08638.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14771-PA 606 GF14771-PA 1..606 1..620 2335 72.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23718-PA 620 GG23718-PA 1..620 1..620 3008 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13392-PA 621 GH13392-PA 5..621 4..620 2207 66.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
mre11-PA 620 CG16928-PA 1..620 1..620 3180 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20705-PA 617 GI20705-PA 1..617 1..620 2228 67.5 Plus
Dmoj\GI20694-PA 517 GI20694-PA 1..497 1..543 1588 57 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19555-PA 621 GL19555-PA 1..621 1..620 2478 78.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14221-PA 621 GA14221-PA 1..621 1..620 2458 78.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19007-PA 620 GM19007-PA 1..620 1..620 3276 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23775-PA 620 GD23775-PA 1..620 1..620 3271 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13289-PA 623 GJ13289-PA 1..623 1..620 2173 66.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21058-PA 619 GK21058-PA 1..619 1..620 2229 68.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18523-PA 621 GE18523-PA 1..621 1..620 2981 93.9 Plus

LD08638.hyp Sequence

Translation from 56 to 1918

> LD08638.hyp
MNGTTTAEQDADNVIRILVATDNHLGYGEKDAVRGEDSFTAFEEILELAV
SEDVDMILLGGDLFHDAVPSQNALHKCIELLRRYTFGDRPVSLEILSDQG
QCFHNAVNQSVNYEDPNLNIAIPVFSIHGNHDDPSGFGRLSSLDLLSTSG
LVNYFGRWTDLTQVEISPVLMRKGESQLALYGLSHIHDGRLARLIKDFKV
KFNCPENVANGEDGNESKEEEDWFHLLVVHQNRADRGPKNYLPEDLLPSF
LHLVIWGHEHDCRIEPEENAKKRFYVSQPGSSVPTSLSEGEAKKKHVGLL
EIYKGKFKLKPLPLETVRPFVYESVVLADHADELGLVEGDASTKVFKFAQ
ERVEAMIERAVAQHTGHPKQPTLPLIRLRLLYTDESCMFNAIRFGEMLST
RVANVQDVVQFSKVVKRTKTEAVNLDKEALRRALEADNATRVEELVDRYF
EEAKSNKPLKLFHSKALAEMTYRLLEQRDADAAENIVKFYKEKAVDHLME
AMPNDENIDEELERFRALHKHGDLLKMLDTQGLKVKKEEKSMSVLGSEVN
VSTAPATGRGAARGRGTARTRAGATAATRGKGQLDVTVSSTRTSGRQQTL
LSSLMGSRNTASYVISDDSD*

LD08638.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
mre11-PA 620 CG16928-PA 1..620 1..620 3180 100 Plus