Clone LD08641 Report

Search the DGRC for LD08641

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:86
Well:41
Vector:pBS SK-
Associated Gene/TranscriptCG2991-RA
Protein status:LD08641.pep: gold
Preliminary Size:3147
Sequenced Size:3111

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2991 2001-01-01 Release 2 assignment
CG2991 2003-01-01 Sim4 clustering to Release 3
CG2991 2003-03-27 Blastp of sequenced clone
CG2991 2008-04-29 Release 5.5 accounting
CG2991 2008-08-15 Release 5.9 accounting
CG2991 2008-12-18 5.12 accounting

Clone Sequence Records

LD08641.complete Sequence

3111 bp (3111 high quality bases) assembled on 2003-03-27

GenBank Submission: BT006012

> LD08641.complete
CTCTAGTTCAGCAAACGCGGTCACACTGCAAGTTCAGAGCTCGAGTGATT
TTCATCGCGTCGCGAAACGAAAAAAAGTTATATATATATTAAATTTGCGA
GGCATAACAACCATTTACCCATTCCTGGGGGCCAAATGTGACGGTGCTGT
TGTAGTTGTAGTAGTTTAGGGTACAAGCAGTCGGTTGGTACCACAACAAC
ATAACGAAAACGGAATCCAATTGGAAACGGAAACTGCGCGTCCTTTAAAA
TATGTGACAAAGAACAACAAAGAGGCAACAAATTGTTAAGCAACTTGCTC
AGTTACAAGAATATATAAATGTGATGCAATAGCATAACCATTTCCACACG
GACGCCACAGCAACTTGGACAGTATTAGGCAGACTTCGTAACTAGCATAT
TTTCGCAAACAGTACATGCATACGCTTAGCACAACATAGTGGGCCACAGT
TTGCACTCATATTACCCCAATAGGGCTCCAAAAACCGTAGCGCTCAAATG
GATACTTTTTGATTTAGCATAGGATGCTGCCGAGCCTGGATACCTTAATG
CGTTGCTCGAAGCGAGTTCTGCAATCGCCGCTGGAGGCGGCGGCCAGCCA
GATGCGGAATGGGCACAGCAAGTCGGCCGCCGGGGGCATCTACGGCCCCT
TTACGCCGGACAACGATCTCAGCTGCTCGGGACGGGGCGATTGCGTCAAC
AACACCTGCGTCTGCGACATTCGGTACGCGGGCAACGAGTGCGACATCTT
CAATCTGCCCTACTACGCCGGAATCTCCACCGTCTTCTACGTGGTGGCCC
TCGTCTCGGTCATCCAGCTGCTCATCTGCATCGTGGCCGAATATCAGCGG
CTGAAGCAGCCCTCCGTACTCCGCGCCTGTCGCATCACCACCCAGAAACT
GCTCTACTTCATGGTCTTTGTGGCGGCCTCGTTGCGAGGTGCCTACTTCA
CCACACCCCTGGATCTGCAGCCACAATGGGCTGTCACCCTGATGTCCGCC
TACTATCCATTGCTCATGACCTGCGCCTCGCTAATTGTCTGCATGTGGGC
CGAGATCTTTCACCTGCGCGACATCCGCTGGGAGAAGTCGCAGTTTCTGT
CGAAGAGCTTCCTCGGCTTCGTGGCCTTCAACTTCTTTCTGTACAGCCTG
TTTGGCATAGAGGTCTTCAACTCGCTGATCAACGCGGAGCGTCGCGACTA
CGCCCACATCTTCAACGGATGCTATGCAGTATTACTCCTGATCGTGGTGG
TCTTCTTCCTCATCTACGGCGTGGAAGTGTTCTTTAAGCTGCGCGGCGGT
TTCGTTTACGACCAGACGGGCAAGATTCTCGGTCCCAGCGAGGCAATTGT
GAATGCCTCACAATTGCATCAGTCGCGATTCGGACTGCTGTTTCAGGCCG
TGATGCTAATCGTGATTGTGGGCTTTCTGACTTCCGAAACTTTGGGCGAC
TTCTGGAAGACCAAGGTTCCAGTTAACTCGCGCAACTGGCATGACATCAT
TTTTCGCATCGCCGAGATCGGTGTGGCTCTCTGGTTTCCCTGCTGCCTTT
GGAACTCGATGGCTCCTGAACAGCTCTGGATTCTAAATCCTCGCAAGCTT
CTATCCCGCCAAATTGATCCGTCGATACCCACTCTAAATGCGGAGACCAA
CAAGCTCTCGCCCGAAGAGGGCCAGTCGTTTTTAACCAAAAAGGATTGCT
GGATCTGTTACGACTCCGACAAGCCAGAGCCCCTCATCCAGCCCTGCCGC
TGCACTGGCGACGTAAGTTCGGTGCACCACGAGTGTCTCAAGCGCTGGCT
GGTGGAGAGCTGCAGCAATTCGGAGGCGCAGTTGTCGTGCAAGGTCTGCG
GACATCCCTACGAGATCGAAAAGTCCAAAAAACTCGAATGGGACAAGGGC
TTCACCATTCAGCATTGGTCCAAGACGGTTATATTGATCACCTTGATGTG
CGTAACCGGTGCCACCGCCTGGGTGGTGATCCAAATGTACGTTGATCCGC
TGGTGCGCGTGATGACAGTGGGCATCGCCGTGCTCATTGGCTATGTGTGC
GTCAAGTGTTTGGGCGAGAACACCGTGGTGGCCTATCAGCGGGCCAAAGT
TAGCTCAATCAACATCGTGACCAGCTCGGAGATGGAGAAGTTGCACACCA
TTTGCGAGGAGGTCAGCGCCAGCACCTCCGCAGAGGCGGTTCGGGCGGGA
GCTGCGTCCTAAGAGGCTACCACACACATCAGCTGAACCCCCACAGACAA
AACATTACTTACTTACTTACCTAGTTTAGCATGCGTTTTGCACAGGTTTT
GCTCAATGCTCAATTATTAGTTTACACATCACACGCGAGGTGGGTCCTAG
CACCCGCCTTTCTATCCTCAACCGTGTACATAGGTTTAAATCTCTAGCGA
GTAGACAAGAAGAGTAGCGAAAAGCGTTTCGATTAACGAGTGAATTTCGT
CTCTCAAATTATCATGCAGATTTCCAGAAGCAAAGTGTATTACAAGAAGC
CAAATATTACGTAGAATAAGTGTAGGTCAGTATCAATTGCGAAAGCGAAA
CGGAAACGGAAACAGAAACGAGAACATCCTGAGATTATGATTACGAACGC
GTTGCCAAGTAGCCTGAAGAGCGAATAAGCGAGAAGATAGTGCTTAGATG
CGCCAGTGAGTCAGTCCCCATGCTGATTTATAGTTTATAGTTTTCTTTTA
TTTACACCTAAATTATGAAAGCATTTTGATTTCCTTCATTTCATTATCGG
TTTCATCCATGGATGCAAACAAGAAGCAAGCAAAACACGAGTACTTGGCG
AATATTAAATTAAGCAAACAAGTTTTTAATTTGTACTTGATGGAAATACG
TTTCTTATTAACCTTTAAGTTTACTCCTTAAGAAACTGATTTGTATAAGC
TGCGCCCATATATACATACACACGAACATATATAATATATATATATAAAT
TTTATTGTAGTTACTACACAAAATTTGTCAAAGCAAAGAAAAACAAAACA
AAATCCACAAAAGGAAAGAATCCAACATACAATTTAAGTTACCATACAAT
TTTTGTGATAAAACTAACAAATAAAATACAATTTATAAAACGCAAAAAAA
AAAAAAAAAAA

LD08641.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2991-RA 3146 CG2991-RA 1..3096 1..3096 15480 100 Plus
CG2991-RB 3056 CG2991-RB 419..3006 509..3096 12940 100 Plus
CG2991-RC 2955 CG2991-RC 318..2905 509..3096 12940 100 Plus
CG2991-RB 3056 CG2991-RB 1..418 1..418 2090 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2866992..2868204 1882..3093 5820 99 Plus
chr2L 23010047 chr2L 2864626..2865075 509..958 2190 99.1 Plus
chr2L 23010047 chr2L 2856828..2857245 1..418 2090 100 Plus
chr2L 23010047 chr2L 2865985..2866397 1053..1465 2035 99.5 Plus
chr2L 23010047 chr2L 2866469..2866885 1465..1881 1995 98.6 Plus
chr2L 23010047 chr2L 2865139..2865234 959..1054 465 99 Plus
chr2L 23010047 chr2L 2859293..2859383 418..508 455 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:54:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2867337..2868551 1882..3096 6075 100 Plus
2L 23513712 2L 2864969..2865418 509..958 2250 100 Plus
2L 23513712 2L 2857159..2857576 1..418 2090 100 Plus
2L 23513712 2L 2866814..2867230 1465..1881 2085 100 Plus
2L 23513712 2L 2866330..2866742 1053..1465 2065 100 Plus
2L 23513712 2L 2865482..2865577 959..1054 480 100 Plus
2L 23513712 2L 2859624..2859714 418..508 455 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2867337..2868551 1882..3096 6075 100 Plus
2L 23513712 2L 2864969..2865418 509..958 2250 100 Plus
2L 23513712 2L 2857159..2857576 1..418 2090 100 Plus
2L 23513712 2L 2866814..2867230 1465..1881 2085 100 Plus
2L 23513712 2L 2866330..2866742 1053..1465 2065 100 Plus
2L 23513712 2L 2865482..2865577 959..1054 480 100 Plus
2L 23513712 2L 2859624..2859714 418..508 455 100 Plus
Blast to na_te.dros performed 2019-03-16 21:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 48..140 2989..3082 160 68.8 Plus
roo 9092 roo DM_ROO 9092bp 2293..2343 2430..2480 119 75 Plus

LD08641.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:39:57 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2856828..2857245 1..418 100 -> Plus
chr2L 2859294..2859383 419..508 100 -> Plus
chr2L 2864626..2865075 509..958 99 -> Plus
chr2L 2865139..2865234 959..1054 98 -> Plus
chr2L 2865987..2866396 1055..1464 99 -> Plus
chr2L 2866469..2866885 1465..1881 98 -> Plus
chr2L 2866992..2868204 1882..3093 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:02:53 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG2991-RC 1..1689 524..2212 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:45:59 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG2991-RC 1..1689 524..2212 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:03:46 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG2991-RB 1..1689 524..2212 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:37:27 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG2991-RC 1..1689 524..2212 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:12 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG2991-RB 1..1689 524..2212 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:52 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG2991-RA 1..3093 1..3093 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:45:59 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG2991-RA 1..3093 1..3093 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:46 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG2991-RA 1..3088 6..3093 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:37:27 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG2991-RA 1..3093 1..3093 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:12 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
CG2991-RA 1..3088 6..3093 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:39:57 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2857159..2857576 1..418 100 -> Plus
2L 2859625..2859714 419..508 100 -> Plus
2L 2864969..2865418 509..958 100 -> Plus
2L 2865482..2865577 959..1054 100 -> Plus
2L 2866332..2866741 1055..1464 100 -> Plus
2L 2866814..2867230 1465..1881 100 -> Plus
2L 2867337..2868548 1882..3093 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:39:57 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2857159..2857576 1..418 100 -> Plus
2L 2859625..2859714 419..508 100 -> Plus
2L 2864969..2865418 509..958 100 -> Plus
2L 2865482..2865577 959..1054 100 -> Plus
2L 2866332..2866741 1055..1464 100 -> Plus
2L 2866814..2867230 1465..1881 100 -> Plus
2L 2867337..2868548 1882..3093 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:39:57 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2857159..2857576 1..418 100 -> Plus
2L 2859625..2859714 419..508 100 -> Plus
2L 2864969..2865418 509..958 100 -> Plus
2L 2865482..2865577 959..1054 100 -> Plus
2L 2866332..2866741 1055..1464 100 -> Plus
2L 2866814..2867230 1465..1881 100 -> Plus
2L 2867337..2868548 1882..3093 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:46 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2857159..2857576 1..418 100 -> Plus
arm_2L 2859625..2859714 419..508 100 -> Plus
arm_2L 2864969..2865418 509..958 100 -> Plus
arm_2L 2865482..2865577 959..1054 100 -> Plus
arm_2L 2866332..2866741 1055..1464 100 -> Plus
arm_2L 2866814..2867230 1465..1881 100 -> Plus
arm_2L 2867337..2868548 1882..3093 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:07:33 Download gff for LD08641.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2857159..2857576 1..418 100 -> Plus
2L 2859625..2859714 419..508 100 -> Plus
2L 2864969..2865418 509..958 100 -> Plus
2L 2865482..2865577 959..1054 100 -> Plus
2L 2866332..2866741 1055..1464 100 -> Plus
2L 2866814..2867230 1465..1881 100 -> Plus
2L 2867337..2868548 1882..3093 100   Plus

LD08641.pep Sequence

Translation from 523 to 2211

> LD08641.pep
MLPSLDTLMRCSKRVLQSPLEAAASQMRNGHSKSAAGGIYGPFTPDNDLS
CSGRGDCVNNTCVCDIRYAGNECDIFNLPYYAGISTVFYVVALVSVIQLL
ICIVAEYQRLKQPSVLRACRITTQKLLYFMVFVAASLRGAYFTTPLDLQP
QWAVTLMSAYYPLLMTCASLIVCMWAEIFHLRDIRWEKSQFLSKSFLGFV
AFNFFLYSLFGIEVFNSLINAERRDYAHIFNGCYAVLLLIVVVFFLIYGV
EVFFKLRGGFVYDQTGKILGPSEAIVNASQLHQSRFGLLFQAVMLIVIVG
FLTSETLGDFWKTKVPVNSRNWHDIIFRIAEIGVALWFPCCLWNSMAPEQ
LWILNPRKLLSRQIDPSIPTLNAETNKLSPEEGQSFLTKKDCWICYDSDK
PEPLIQPCRCTGDVSSVHHECLKRWLVESCSNSEAQLSCKVCGHPYEIEK
SKKLEWDKGFTIQHWSKTVILITLMCVTGATAWVVIQMYVDPLVRVMTVG
IAVLIGYVCVKCLGENTVVAYQRAKVSSINIVTSSEMEKLHTICEEVSAS
TSAEAVRAGAAS*

LD08641.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14987-PA 562 GF14987-PA 1..562 1..562 2934 96.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24893-PA 562 GG24893-PA 1..562 1..562 2939 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10682-PA 561 GH10682-PA 1..547 1..547 2704 91.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2991-PC 562 CG2991-PC 1..562 1..562 2965 100 Plus
CG2991-PA 562 CG2991-PA 1..562 1..562 2965 100 Plus
CG2991-PB 562 CG2991-PB 1..562 1..562 2965 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11138-PA 564 GI11138-PA 1..548 1..547 2731 92 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26289-PA 566 GL26289-PA 1..550 1..547 2851 96.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15563-PA 566 GA15563-PA 1..550 1..547 2851 96.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18374-PA 534 GM18374-PA 2..534 30..562 2797 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23189-PA 562 GD23189-PA 1..562 1..562 3012 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18320-PA 561 GJ18320-PA 1..547 1..547 2758 93.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24282-PA 565 GK24282-PA 1..565 1..562 2839 95.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18187-PA 562 GE18187-PA 1..562 1..562 2980 99.1 Plus

LD08641.hyp Sequence

Translation from 523 to 2211

> LD08641.hyp
MLPSLDTLMRCSKRVLQSPLEAAASQMRNGHSKSAAGGIYGPFTPDNDLS
CSGRGDCVNNTCVCDIRYAGNECDIFNLPYYAGISTVFYVVALVSVIQLL
ICIVAEYQRLKQPSVLRACRITTQKLLYFMVFVAASLRGAYFTTPLDLQP
QWAVTLMSAYYPLLMTCASLIVCMWAEIFHLRDIRWEKSQFLSKSFLGFV
AFNFFLYSLFGIEVFNSLINAERRDYAHIFNGCYAVLLLIVVVFFLIYGV
EVFFKLRGGFVYDQTGKILGPSEAIVNASQLHQSRFGLLFQAVMLIVIVG
FLTSETLGDFWKTKVPVNSRNWHDIIFRIAEIGVALWFPCCLWNSMAPEQ
LWILNPRKLLSRQIDPSIPTLNAETNKLSPEEGQSFLTKKDCWICYDSDK
PEPLIQPCRCTGDVSSVHHECLKRWLVESCSNSEAQLSCKVCGHPYEIEK
SKKLEWDKGFTIQHWSKTVILITLMCVTGATAWVVIQMYVDPLVRVMTVG
IAVLIGYVCVKCLGENTVVAYQRAKVSSINIVTSSEMEKLHTICEEVSAS
TSAEAVRAGAAS*

LD08641.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2991-PC 562 CG2991-PC 1..562 1..562 2965 100 Plus
CG2991-PA 562 CG2991-PA 1..562 1..562 2965 100 Plus
CG2991-PB 562 CG2991-PB 1..562 1..562 2965 100 Plus