Clone LD08709 Report

Search the DGRC for LD08709

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:87
Well:9
Vector:pBS SK-
Associated Gene/TranscriptSse-RA
Protein status:LD08709.pep: gold
Preliminary Size:2127
Sequenced Size:2133

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10583 2001-01-01 Release 2 assignment
CG10583 2002-06-06 Blastp of sequenced clone
CG10583 2003-01-01 Sim4 clustering to Release 3
Sse 2008-04-29 Release 5.5 accounting
Sse 2008-08-15 Release 5.9 accounting
Sse 2008-12-18 5.12 accounting

Clone Sequence Records

LD08709.complete Sequence

2133 bp (2133 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119579

> LD08709.complete
AAGCAATTAAGTAAATAATAAATAATAGGAAATGCTGGAAACCGGTGACG
AGGCTGAGATGCTGGCCGGTTTCACCAGTTCAGATGTTGGCCCCGAGGCG
AAGGAATATAATTTACTGCGCGCCGATGAGGAATACCGCAATGGCAATGT
GGAGCACTCAATTTACTACCAGGTTAAAGCCCAGTTCCAGTCCACCGATC
TGCGTTACCTTACCGAATCGGCGGAACTGGAAAATCAGCGTCCCACCGCA
GAGGAGCTGATCAAATCAGCCACTAAACTGGAGAAAAAGGACTACAAAAG
CAAAAAATTTCTGCAGAACATCATCAAGTACCTCCAGCAAATGGAGCAGG
AGAAACAGCCAAAGAAGCCAATCAACGAAATACCAGAGTATCTAGACTTC
CTGGATGATGTCCAGGATCCTACAGAGGGTCTAACTCGCATTTCAGAGAA
ATGCAATAGTCTGCCCCAAGAATGGTGTGTCCTCCAGCTCTGCAAGAGCT
TTAATCCCGCCACCACCTACTCCGTTTTCAATGAGATCATTGCCAGCGAT
GGAGCAATATATCTCACTCTGCTCCGACACTGTAGAAGTTCCCAACTGGG
ACCGATTTGCCTGAAAATTTCCAACGAAAATACGGCAAATCTCTTTCGAG
AGTATAGCACTCTGGTGGAAAGATTTAGGCGAGTGGTAACCGTGGATCCA
CTCAACATGAAAGGTAAAGAGGCTAAGCAGAAGTATTGGGAGGAGCTGAA
TGGTTTTGACACTTTTCAGCAAAAACTACTTGCCGACTTTCGGGACATAA
TATCTCCATATTCCTTTCTGTTCTTTGGCAAAAGATATGACTGCACTGTT
GTTCAAAAACAAATCAAAGCCACCTATACTCGTGTTGACGATTTCTGTCT
GCTTAATCAATGGGGTACCCACCAACGTGTTTTACTTTCCCAAGCGGCCT
CGCATGCCAATCGACTGGAAATCGCAGATCTCAAACTCATCTGCTATGAG
CTGTCGAGCAACGAAAATGAGATCCAGTCGGCATACGAATTGCTTAAGGG
TTTGGCCAGCGACTGGGCGGAAGTGGAGGAGCGTCAGCCCCTGGCGAGCA
GAAGATTTCCCATCATCCTGGTAGTCGATGAGCGTCTAGACCACCTCCAT
TGGGAACAACTAGTCACCGTGCAGGAATTCTCCCGCGTCAAATCACTGCA
TTGCCTATGGCGCTTGTTCCAGAATCACAAATCAAACATAAAGCATGGCT
ACTACACAACAAATATTAAACGTGGCATGTGTGTAATAAACCCAGATGCG
GATTTGGTCAACTCCGGCCGCAGGCTGCGTAGCTTTTTTGAGTACTGGCT
CTCCCAGTGGCAGCATCTTTTTGAAACCGTGCCCAATGAGGAGGTGATGG
TGAAACAGGCGCTACAGGCGGATTGCTTTGTATACGCAGGTCACGGTTCT
GGGCTGCAGTACGTCAATGGTCGCATAATTTGCCGGGCTCGGGTACGCAG
CGTTGTTTTTCTATTCGGCTGCGATTCTACACGCATGTTGGGCACGGGCC
TGTACAGCGCATTGTATGGAGCCCATGATTATTACCATGGAGCTCTGTGT
CCTTCGATAGTTGGTACTCTCATGCCCGCCTTGGATGGTAATATGGATAC
TGTTTCGGTGACAATATTGAGTCGTTGGTTGGCCCCGGGGGATAACAAAG
TGATTCCGTGGACACATATTGATCGGGTGCCTTGGCTCAAAAATGGCATT
ATAAAAGGAAAAGATGAAACCACGCCCACCATGAACGATCAACCCAACTA
CCATCTGGGCAGCCTGTGCTCTATCCTATCTCTCGTACAGCAAGGAAAAG
TGGAGCCGAATATCTACAACTGCTGCATTTACGTGTGCCGCGGACTTCCC
GCATGGAATTTGGCCGTGGAAAAGCTGCCTTTATAGCTCATTTCGTCGTG
GAGTCGATCTCCCTAAGCAAAGTTTTGCGTATGGAACTGTGTACAATAAT
TTAATTTAATTGAACTACTTCATTCAAGTGGAAAGTGGTGCTCAAAGTTT
GCATTAAACGCTAAATGTAACACTCAGAATAGTAAAAATAAACTAAACAT
TTATATATTAGGAAGAAAAAAAAAAAAAAAAAA

LD08709.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
Sse-RA 2192 Sse-RA 64..2181 1..2118 10590 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5653835..5654308 772..299 2190 97.5 Minus
chr3L 24539361 chr3L 5652269..5652627 2114..1756 1780 99.7 Minus
chr3L 24539361 chr3L 5653418..5653777 1132..773 1725 98.6 Minus
chr3L 24539361 chr3L 5652681..5653007 1758..1432 1575 98.8 Minus
chr3L 24539361 chr3L 5653065..5653365 1431..1131 1445 98.7 Minus
chr3L 24539361 chr3L 5654371..5654567 300..104 955 99 Minus
chr3L 24539361 chr3L 5654651..5654754 104..1 505 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5661267..5661740 772..299 2370 100 Minus
3L 28110227 3L 5659697..5660059 2118..1756 1815 100 Minus
3L 28110227 3L 5660850..5661209 1132..773 1800 100 Minus
3L 28110227 3L 5660113..5660439 1758..1432 1635 100 Minus
3L 28110227 3L 5660497..5660797 1431..1131 1505 100 Minus
3L 28110227 3L 5661802..5661998 300..104 985 100 Minus
3L 28110227 3L 5662082..5662185 104..1 520 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5654367..5654840 772..299 2370 100 Minus
3L 28103327 3L 5652797..5653159 2118..1756 1815 100 Minus
3L 28103327 3L 5653950..5654309 1132..773 1800 100 Minus
3L 28103327 3L 5653213..5653539 1758..1432 1635 100 Minus
3L 28103327 3L 5653597..5653897 1431..1131 1505 100 Minus
3L 28103327 3L 5654902..5655098 300..104 985 100 Minus
3L 28103327 3L 5655182..5655285 104..1 520 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:02:45 has no hits.

LD08709.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:03:31 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5652268..5652625 1758..2115 99 <- Minus
chr3L 5652682..5653007 1432..1757 98 <- Minus
chr3L 5653065..5653363 1133..1431 98 <- Minus
chr3L 5653418..5653777 773..1132 98 <- Minus
chr3L 5653835..5654306 301..772 97 <- Minus
chr3L 5654371..5654566 105..300 98 <- Minus
chr3L 5654651..5654754 1..104 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:41:33 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 1..1905 32..1936 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:31:07 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 1..1905 32..1936 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:14:03 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 1..1905 32..1936 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:21:12 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 1..1905 32..1936 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:24:18 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 1..1905 32..1936 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:01:04 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 57..2171 1..2115 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:31:06 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 57..2171 1..2115 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:14:03 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 63..2177 1..2115 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:21:12 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 57..2171 1..2115 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:24:18 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 63..2177 1..2115 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:31 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5659700..5660057 1758..2115 100 <- Minus
3L 5660114..5660439 1432..1757 100 <- Minus
3L 5660497..5660795 1133..1431 100 <- Minus
3L 5660850..5661209 773..1132 100 <- Minus
3L 5661267..5661738 301..772 100 <- Minus
3L 5661802..5661997 105..300 100 <- Minus
3L 5662082..5662185 1..104 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:31 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5659700..5660057 1758..2115 100 <- Minus
3L 5660114..5660439 1432..1757 100 <- Minus
3L 5660497..5660795 1133..1431 100 <- Minus
3L 5660850..5661209 773..1132 100 <- Minus
3L 5661267..5661738 301..772 100 <- Minus
3L 5661802..5661997 105..300 100 <- Minus
3L 5662082..5662185 1..104 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:31 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5659700..5660057 1758..2115 100 <- Minus
3L 5660114..5660439 1432..1757 100 <- Minus
3L 5660497..5660795 1133..1431 100 <- Minus
3L 5660850..5661209 773..1132 100 <- Minus
3L 5661267..5661738 301..772 100 <- Minus
3L 5661802..5661997 105..300 100 <- Minus
3L 5662082..5662185 1..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:14:03 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5653950..5654309 773..1132 100 <- Minus
arm_3L 5652800..5653157 1758..2115 100 <- Minus
arm_3L 5653214..5653539 1432..1757 100 <- Minus
arm_3L 5653597..5653895 1133..1431 100 <- Minus
arm_3L 5654367..5654838 301..772 100 <- Minus
arm_3L 5654902..5655097 105..300 100 <- Minus
arm_3L 5655182..5655285 1..104 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:55:02 Download gff for LD08709.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5653950..5654309 773..1132 100 <- Minus
3L 5653597..5653895 1133..1431 100 <- Minus
3L 5652800..5653157 1758..2115 100 <- Minus
3L 5653214..5653539 1432..1757 100 <- Minus
3L 5654367..5654838 301..772 100 <- Minus
3L 5654902..5655097 105..300 100 <- Minus
3L 5655182..5655285 1..104 100   Minus

LD08709.pep Sequence

Translation from 31 to 1935

> LD08709.pep
MLETGDEAEMLAGFTSSDVGPEAKEYNLLRADEEYRNGNVEHSIYYQVKA
QFQSTDLRYLTESAELENQRPTAEELIKSATKLEKKDYKSKKFLQNIIKY
LQQMEQEKQPKKPINEIPEYLDFLDDVQDPTEGLTRISEKCNSLPQEWCV
LQLCKSFNPATTYSVFNEIIASDGAIYLTLLRHCRSSQLGPICLKISNEN
TANLFREYSTLVERFRRVVTVDPLNMKGKEAKQKYWEELNGFDTFQQKLL
ADFRDIISPYSFLFFGKRYDCTVVQKQIKATYTRVDDFCLLNQWGTHQRV
LLSQAASHANRLEIADLKLICYELSSNENEIQSAYELLKGLASDWAEVEE
RQPLASRRFPIILVVDERLDHLHWEQLVTVQEFSRVKSLHCLWRLFQNHK
SNIKHGYYTTNIKRGMCVINPDADLVNSGRRLRSFFEYWLSQWQHLFETV
PNEEVMVKQALQADCFVYAGHGSGLQYVNGRIICRARVRSVVFLFGCDST
RMLGTGLYSALYGAHDYYHGALCPSIVGTLMPALDGNMDTVSVTILSRWL
APGDNKVIPWTHIDRVPWLKNGIIKGKDETTPTMNDQPNYHLGSLCSILS
LVQQGKVEPNIYNCCIYVCRGLPAWNLAVEKLPL*

LD08709.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10451-PA 635 GF10451-PA 1..635 1..634 2755 77.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14118-PA 634 GG14118-PA 1..634 1..634 3191 92.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15013-PA 635 GH15013-PA 11..635 11..634 2153 61.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
Sse-PA 634 CG10583-PA 1..634 1..634 3367 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13175-PA 636 GI13175-PA 1..636 1..634 2103 59.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11963-PA 577 GL11963-PA 1..577 1..634 2098 63.4 Plus
Dper\GL18444-PA 103 GL18444-PA 1..89 1..89 345 71.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10414-PA 637 GA10414-PA 1..637 1..634 2514 71.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13904-PA 634 GM13904-PA 1..634 1..634 3284 95.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13181-PA 634 GD13181-PA 1..634 1..634 3308 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Sse-PA 637 GJ11950-PA 11..637 11..634 2154 60.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Sse-PA 635 GK16876-PA 8..635 10..634 2021 57.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20543-PA 634 GE20543-PA 1..634 1..634 3218 92.7 Plus

LD08709.hyp Sequence

Translation from 31 to 1935

> LD08709.hyp
MLETGDEAEMLAGFTSSDVGPEAKEYNLLRADEEYRNGNVEHSIYYQVKA
QFQSTDLRYLTESAELENQRPTAEELIKSATKLEKKDYKSKKFLQNIIKY
LQQMEQEKQPKKPINEIPEYLDFLDDVQDPTEGLTRISEKCNSLPQEWCV
LQLCKSFNPATTYSVFNEIIASDGAIYLTLLRHCRSSQLGPICLKISNEN
TANLFREYSTLVERFRRVVTVDPLNMKGKEAKQKYWEELNGFDTFQQKLL
ADFRDIISPYSFLFFGKRYDCTVVQKQIKATYTRVDDFCLLNQWGTHQRV
LLSQAASHANRLEIADLKLICYELSSNENEIQSAYELLKGLASDWAEVEE
RQPLASRRFPIILVVDERLDHLHWEQLVTVQEFSRVKSLHCLWRLFQNHK
SNIKHGYYTTNIKRGMCVINPDADLVNSGRRLRSFFEYWLSQWQHLFETV
PNEEVMVKQALQADCFVYAGHGSGLQYVNGRIICRARVRSVVFLFGCDST
RMLGTGLYSALYGAHDYYHGALCPSIVGTLMPALDGNMDTVSVTILSRWL
APGDNKVIPWTHIDRVPWLKNGIIKGKDETTPTMNDQPNYHLGSLCSILS
LVQQGKVEPNIYNCCIYVCRGLPAWNLAVEKLPL*

LD08709.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Sse-PA 634 CG10583-PA 1..634 1..634 3367 100 Plus