BDGP Sequence Production Resources |
Search the DGRC for LD08709
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 87 |
Well: | 9 |
Vector: | pBS SK- |
Associated Gene/Transcript | Sse-RA |
Protein status: | LD08709.pep: gold |
Preliminary Size: | 2127 |
Sequenced Size: | 2133 |
Gene | Date | Evidence |
---|---|---|
CG10583 | 2001-01-01 | Release 2 assignment |
CG10583 | 2002-06-06 | Blastp of sequenced clone |
CG10583 | 2003-01-01 | Sim4 clustering to Release 3 |
Sse | 2008-04-29 | Release 5.5 accounting |
Sse | 2008-08-15 | Release 5.9 accounting |
Sse | 2008-12-18 | 5.12 accounting |
2133 bp (2133 high quality bases) assembled on 2002-06-06
GenBank Submission: AY119579
> LD08709.complete AAGCAATTAAGTAAATAATAAATAATAGGAAATGCTGGAAACCGGTGACG AGGCTGAGATGCTGGCCGGTTTCACCAGTTCAGATGTTGGCCCCGAGGCG AAGGAATATAATTTACTGCGCGCCGATGAGGAATACCGCAATGGCAATGT GGAGCACTCAATTTACTACCAGGTTAAAGCCCAGTTCCAGTCCACCGATC TGCGTTACCTTACCGAATCGGCGGAACTGGAAAATCAGCGTCCCACCGCA GAGGAGCTGATCAAATCAGCCACTAAACTGGAGAAAAAGGACTACAAAAG CAAAAAATTTCTGCAGAACATCATCAAGTACCTCCAGCAAATGGAGCAGG AGAAACAGCCAAAGAAGCCAATCAACGAAATACCAGAGTATCTAGACTTC CTGGATGATGTCCAGGATCCTACAGAGGGTCTAACTCGCATTTCAGAGAA ATGCAATAGTCTGCCCCAAGAATGGTGTGTCCTCCAGCTCTGCAAGAGCT TTAATCCCGCCACCACCTACTCCGTTTTCAATGAGATCATTGCCAGCGAT GGAGCAATATATCTCACTCTGCTCCGACACTGTAGAAGTTCCCAACTGGG ACCGATTTGCCTGAAAATTTCCAACGAAAATACGGCAAATCTCTTTCGAG AGTATAGCACTCTGGTGGAAAGATTTAGGCGAGTGGTAACCGTGGATCCA CTCAACATGAAAGGTAAAGAGGCTAAGCAGAAGTATTGGGAGGAGCTGAA TGGTTTTGACACTTTTCAGCAAAAACTACTTGCCGACTTTCGGGACATAA TATCTCCATATTCCTTTCTGTTCTTTGGCAAAAGATATGACTGCACTGTT GTTCAAAAACAAATCAAAGCCACCTATACTCGTGTTGACGATTTCTGTCT GCTTAATCAATGGGGTACCCACCAACGTGTTTTACTTTCCCAAGCGGCCT CGCATGCCAATCGACTGGAAATCGCAGATCTCAAACTCATCTGCTATGAG CTGTCGAGCAACGAAAATGAGATCCAGTCGGCATACGAATTGCTTAAGGG TTTGGCCAGCGACTGGGCGGAAGTGGAGGAGCGTCAGCCCCTGGCGAGCA GAAGATTTCCCATCATCCTGGTAGTCGATGAGCGTCTAGACCACCTCCAT TGGGAACAACTAGTCACCGTGCAGGAATTCTCCCGCGTCAAATCACTGCA TTGCCTATGGCGCTTGTTCCAGAATCACAAATCAAACATAAAGCATGGCT ACTACACAACAAATATTAAACGTGGCATGTGTGTAATAAACCCAGATGCG GATTTGGTCAACTCCGGCCGCAGGCTGCGTAGCTTTTTTGAGTACTGGCT CTCCCAGTGGCAGCATCTTTTTGAAACCGTGCCCAATGAGGAGGTGATGG TGAAACAGGCGCTACAGGCGGATTGCTTTGTATACGCAGGTCACGGTTCT GGGCTGCAGTACGTCAATGGTCGCATAATTTGCCGGGCTCGGGTACGCAG CGTTGTTTTTCTATTCGGCTGCGATTCTACACGCATGTTGGGCACGGGCC TGTACAGCGCATTGTATGGAGCCCATGATTATTACCATGGAGCTCTGTGT CCTTCGATAGTTGGTACTCTCATGCCCGCCTTGGATGGTAATATGGATAC TGTTTCGGTGACAATATTGAGTCGTTGGTTGGCCCCGGGGGATAACAAAG TGATTCCGTGGACACATATTGATCGGGTGCCTTGGCTCAAAAATGGCATT ATAAAAGGAAAAGATGAAACCACGCCCACCATGAACGATCAACCCAACTA CCATCTGGGCAGCCTGTGCTCTATCCTATCTCTCGTACAGCAAGGAAAAG TGGAGCCGAATATCTACAACTGCTGCATTTACGTGTGCCGCGGACTTCCC GCATGGAATTTGGCCGTGGAAAAGCTGCCTTTATAGCTCATTTCGTCGTG GAGTCGATCTCCCTAAGCAAAGTTTTGCGTATGGAACTGTGTACAATAAT TTAATTTAATTGAACTACTTCATTCAAGTGGAAAGTGGTGCTCAAAGTTT GCATTAAACGCTAAATGTAACACTCAGAATAGTAAAAATAAACTAAACAT TTATATATTAGGAAGAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sse-RA | 2192 | Sse-RA | 64..2181 | 1..2118 | 10590 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 5653835..5654308 | 772..299 | 2190 | 97.5 | Minus |
chr3L | 24539361 | chr3L | 5652269..5652627 | 2114..1756 | 1780 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 5653418..5653777 | 1132..773 | 1725 | 98.6 | Minus |
chr3L | 24539361 | chr3L | 5652681..5653007 | 1758..1432 | 1575 | 98.8 | Minus |
chr3L | 24539361 | chr3L | 5653065..5653365 | 1431..1131 | 1445 | 98.7 | Minus |
chr3L | 24539361 | chr3L | 5654371..5654567 | 300..104 | 955 | 99 | Minus |
chr3L | 24539361 | chr3L | 5654651..5654754 | 104..1 | 505 | 99 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 5661267..5661740 | 772..299 | 2370 | 100 | Minus |
3L | 28110227 | 3L | 5659697..5660059 | 2118..1756 | 1815 | 100 | Minus |
3L | 28110227 | 3L | 5660850..5661209 | 1132..773 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 5660113..5660439 | 1758..1432 | 1635 | 100 | Minus |
3L | 28110227 | 3L | 5660497..5660797 | 1431..1131 | 1505 | 100 | Minus |
3L | 28110227 | 3L | 5661802..5661998 | 300..104 | 985 | 100 | Minus |
3L | 28110227 | 3L | 5662082..5662185 | 104..1 | 520 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 5654367..5654840 | 772..299 | 2370 | 100 | Minus |
3L | 28103327 | 3L | 5652797..5653159 | 2118..1756 | 1815 | 100 | Minus |
3L | 28103327 | 3L | 5653950..5654309 | 1132..773 | 1800 | 100 | Minus |
3L | 28103327 | 3L | 5653213..5653539 | 1758..1432 | 1635 | 100 | Minus |
3L | 28103327 | 3L | 5653597..5653897 | 1431..1131 | 1505 | 100 | Minus |
3L | 28103327 | 3L | 5654902..5655098 | 300..104 | 985 | 100 | Minus |
3L | 28103327 | 3L | 5655182..5655285 | 104..1 | 520 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 5652268..5652625 | 1758..2115 | 99 | <- | Minus |
chr3L | 5652682..5653007 | 1432..1757 | 98 | <- | Minus |
chr3L | 5653065..5653363 | 1133..1431 | 98 | <- | Minus |
chr3L | 5653418..5653777 | 773..1132 | 98 | <- | Minus |
chr3L | 5653835..5654306 | 301..772 | 97 | <- | Minus |
chr3L | 5654371..5654566 | 105..300 | 98 | <- | Minus |
chr3L | 5654651..5654754 | 1..104 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sse-RA | 1..1905 | 32..1936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sse-RA | 1..1905 | 32..1936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sse-RA | 1..1905 | 32..1936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sse-RA | 1..1905 | 32..1936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sse-RA | 1..1905 | 32..1936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sse-RA | 57..2171 | 1..2115 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sse-RA | 57..2171 | 1..2115 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sse-RA | 63..2177 | 1..2115 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sse-RA | 57..2171 | 1..2115 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sse-RA | 63..2177 | 1..2115 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5659700..5660057 | 1758..2115 | 100 | <- | Minus |
3L | 5660114..5660439 | 1432..1757 | 100 | <- | Minus |
3L | 5660497..5660795 | 1133..1431 | 100 | <- | Minus |
3L | 5660850..5661209 | 773..1132 | 100 | <- | Minus |
3L | 5661267..5661738 | 301..772 | 100 | <- | Minus |
3L | 5661802..5661997 | 105..300 | 100 | <- | Minus |
3L | 5662082..5662185 | 1..104 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5659700..5660057 | 1758..2115 | 100 | <- | Minus |
3L | 5660114..5660439 | 1432..1757 | 100 | <- | Minus |
3L | 5660497..5660795 | 1133..1431 | 100 | <- | Minus |
3L | 5660850..5661209 | 773..1132 | 100 | <- | Minus |
3L | 5661267..5661738 | 301..772 | 100 | <- | Minus |
3L | 5661802..5661997 | 105..300 | 100 | <- | Minus |
3L | 5662082..5662185 | 1..104 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5659700..5660057 | 1758..2115 | 100 | <- | Minus |
3L | 5660114..5660439 | 1432..1757 | 100 | <- | Minus |
3L | 5660497..5660795 | 1133..1431 | 100 | <- | Minus |
3L | 5660850..5661209 | 773..1132 | 100 | <- | Minus |
3L | 5661267..5661738 | 301..772 | 100 | <- | Minus |
3L | 5661802..5661997 | 105..300 | 100 | <- | Minus |
3L | 5662082..5662185 | 1..104 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 5653950..5654309 | 773..1132 | 100 | <- | Minus |
arm_3L | 5652800..5653157 | 1758..2115 | 100 | <- | Minus |
arm_3L | 5653214..5653539 | 1432..1757 | 100 | <- | Minus |
arm_3L | 5653597..5653895 | 1133..1431 | 100 | <- | Minus |
arm_3L | 5654367..5654838 | 301..772 | 100 | <- | Minus |
arm_3L | 5654902..5655097 | 105..300 | 100 | <- | Minus |
arm_3L | 5655182..5655285 | 1..104 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5653950..5654309 | 773..1132 | 100 | <- | Minus |
3L | 5653597..5653895 | 1133..1431 | 100 | <- | Minus |
3L | 5652800..5653157 | 1758..2115 | 100 | <- | Minus |
3L | 5653214..5653539 | 1432..1757 | 100 | <- | Minus |
3L | 5654367..5654838 | 301..772 | 100 | <- | Minus |
3L | 5654902..5655097 | 105..300 | 100 | <- | Minus |
3L | 5655182..5655285 | 1..104 | 100 | Minus |
Translation from 31 to 1935
> LD08709.pep MLETGDEAEMLAGFTSSDVGPEAKEYNLLRADEEYRNGNVEHSIYYQVKA QFQSTDLRYLTESAELENQRPTAEELIKSATKLEKKDYKSKKFLQNIIKY LQQMEQEKQPKKPINEIPEYLDFLDDVQDPTEGLTRISEKCNSLPQEWCV LQLCKSFNPATTYSVFNEIIASDGAIYLTLLRHCRSSQLGPICLKISNEN TANLFREYSTLVERFRRVVTVDPLNMKGKEAKQKYWEELNGFDTFQQKLL ADFRDIISPYSFLFFGKRYDCTVVQKQIKATYTRVDDFCLLNQWGTHQRV LLSQAASHANRLEIADLKLICYELSSNENEIQSAYELLKGLASDWAEVEE RQPLASRRFPIILVVDERLDHLHWEQLVTVQEFSRVKSLHCLWRLFQNHK SNIKHGYYTTNIKRGMCVINPDADLVNSGRRLRSFFEYWLSQWQHLFETV PNEEVMVKQALQADCFVYAGHGSGLQYVNGRIICRARVRSVVFLFGCDST RMLGTGLYSALYGAHDYYHGALCPSIVGTLMPALDGNMDTVSVTILSRWL APGDNKVIPWTHIDRVPWLKNGIIKGKDETTPTMNDQPNYHLGSLCSILS LVQQGKVEPNIYNCCIYVCRGLPAWNLAVEKLPL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10451-PA | 635 | GF10451-PA | 1..635 | 1..634 | 2755 | 77.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14118-PA | 634 | GG14118-PA | 1..634 | 1..634 | 3191 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15013-PA | 635 | GH15013-PA | 11..635 | 11..634 | 2153 | 61.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sse-PA | 634 | CG10583-PA | 1..634 | 1..634 | 3367 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13175-PA | 636 | GI13175-PA | 1..636 | 1..634 | 2103 | 59.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11963-PA | 577 | GL11963-PA | 1..577 | 1..634 | 2098 | 63.4 | Plus |
Dper\GL18444-PA | 103 | GL18444-PA | 1..89 | 1..89 | 345 | 71.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10414-PA | 637 | GA10414-PA | 1..637 | 1..634 | 2514 | 71.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13904-PA | 634 | GM13904-PA | 1..634 | 1..634 | 3284 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13181-PA | 634 | GD13181-PA | 1..634 | 1..634 | 3308 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Sse-PA | 637 | GJ11950-PA | 11..637 | 11..634 | 2154 | 60.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\Sse-PA | 635 | GK16876-PA | 8..635 | 10..634 | 2021 | 57.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20543-PA | 634 | GE20543-PA | 1..634 | 1..634 | 3218 | 92.7 | Plus |
Translation from 31 to 1935
> LD08709.hyp MLETGDEAEMLAGFTSSDVGPEAKEYNLLRADEEYRNGNVEHSIYYQVKA QFQSTDLRYLTESAELENQRPTAEELIKSATKLEKKDYKSKKFLQNIIKY LQQMEQEKQPKKPINEIPEYLDFLDDVQDPTEGLTRISEKCNSLPQEWCV LQLCKSFNPATTYSVFNEIIASDGAIYLTLLRHCRSSQLGPICLKISNEN TANLFREYSTLVERFRRVVTVDPLNMKGKEAKQKYWEELNGFDTFQQKLL ADFRDIISPYSFLFFGKRYDCTVVQKQIKATYTRVDDFCLLNQWGTHQRV LLSQAASHANRLEIADLKLICYELSSNENEIQSAYELLKGLASDWAEVEE RQPLASRRFPIILVVDERLDHLHWEQLVTVQEFSRVKSLHCLWRLFQNHK SNIKHGYYTTNIKRGMCVINPDADLVNSGRRLRSFFEYWLSQWQHLFETV PNEEVMVKQALQADCFVYAGHGSGLQYVNGRIICRARVRSVVFLFGCDST RMLGTGLYSALYGAHDYYHGALCPSIVGTLMPALDGNMDTVSVTILSRWL APGDNKVIPWTHIDRVPWLKNGIIKGKDETTPTMNDQPNYHLGSLCSILS LVQQGKVEPNIYNCCIYVCRGLPAWNLAVEKLPL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sse-PA | 634 | CG10583-PA | 1..634 | 1..634 | 3367 | 100 | Plus |