Clone LD08718 Report

Search the DGRC for LD08718

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:87
Well:18
Vector:pBS SK-
Associated Gene/TranscriptCG10889-RA
Protein status:LD08718.pep: gold
Preliminary Size:2106
Sequenced Size:2149

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10889 2001-01-01 Release 2 assignment
CG10889 2003-01-01 Sim4 clustering to Release 3
CG10889 2003-01-13 Blastp of sequenced clone
CG10889 2008-04-29 Release 5.5 accounting
CG10889 2008-08-15 Release 5.9 accounting
CG10889 2008-12-18 5.12 accounting

Clone Sequence Records

LD08718.complete Sequence

2149 bp (2149 high quality bases) assembled on 2003-01-13

GenBank Submission: AY069382

> LD08718.complete
CTTGCTGCAGAGAACAGCTAAAAACGCAAGGAAGCGGGCAAAACAAACAA
CAGGAGCGAGCAGCCGAGGGAAAGCCAGCCGCTGGTCAGTTAGATGCGCA
TCAAGATGGATTGCGAAGTGCAGGAGCAACACAAACAGCAGCAACAACAA
CAGCAGGTCCACCAGCAACAACAAAAACACGGCAGCAGCAACAAGTTGCC
AGTGAGAAAGCAGGAAAGCTGCTCCGACGACGATGAGAGCCAGAGTCCCA
GCCGCACAACGGAGCGCCAGAACCTGGAGTTCGCCAAAAAGCTAGGCTAC
AGCGAACAGTCCATCCATTCGGCGCTGACGCGCCTCGGCTCGGAAGCCAA
GCAGAACGAGCTGCTGGCGGAGCTGATCAAGCTGACGGCCGATGCACCGC
GGCCCGCCCACATAGGCGGAGGCGGCAGTCCATCCAGCATGACCAGCACT
CTGTCCTCCCCGACCGGCGGTAGCAACAGCTCTGGCTTGAGACACATCGT
AATCGATGGCAGTAATGTCGCCCTTTCTCACGGCAACAATCTAGTATTCT
CTTGCCGCGGCATTCGCATCTGTGTGGACTGGTTCCGGCAGCGTGGCCAT
CGCGACATCACCGCTTTCGTGCCCAACTGGCGCAAGGAGATGGCGAACAA
CAACATAGCCGACCAGGAGCTGCTCTACGAGCTGGAGCACGAAAGATACC
TGGTGTTCACGCCATCGCGACATCTGGATGGCAAGCGTGTGTCCTGCTAC
GATGATCGCTTCATACTCAAGCTGGCAGTGGAAACTGACGGCATTGTAGT
CTCCAACGACAACTACAGGGATCTGATCCTGGAGAGTAACGAGTTTAGGC
GCGTGGTGCAGGAGCGCCTGTTGATGTACTCTTTTGTAAATGACATCTTC
ATGCCACCCGACGATCCGCTGGGCAGATCGGGTCCAAATCTGGACCTCTT
CCTGTGCTCGCAGACGCAGCAGAAAATGGCGGATGCGCAGCAGTTGTGTC
CGTACGGCAAGAAGTGCACCTACGGCCAGAAGTGCAAGTTCCGGCATCAC
AATCAGGCGCCACTGCTGCAGCGCCTCCCGCTGCAGGCCTCCCACAGCGC
GCCCCTGCACACGAACGGTGGCCAACAGTTGGTCAGTCCGGGTGGCAATA
ATAACAATGTTAAGATCAACTCACTGATTAGCCGGGAGCCGCTGGGGCGC
ACCAAGTCAAATACCATCGAGCAGGTATGTCAGGGCTTCTCCGCTCAAAT
GGATCTTTCAGAGGGTGCCGTGGAATCCAGCCAGCCCAATCGCCACAAGA
AGCTGCAGCGCCAACAACCGCCGCCCGCCTACCGCCTGCTGGTGCCCACC
TACAGTGCTCCCCTCCAGCAACAACAACACCAGGCACAGCAGCAGCATCA
ACAGTCCAACTCCAGCACCAACTATCACCACCAGTATCTGACGCGCACGC
CATCCGCCCCGGTCACGGATCAGGGACTGGGTCTGCCACTGCCCGCTCAC
AACTTCGCCCATCTGTCTGCCTCCGATTCGCGCATCAACGAGGAGCTGCA
CGCCTCGCAGCAGCTTCCGCGGGAGGAGCAGCGCCGATTGCTGCGCTATC
ACCTGGGCAGCCTTTTCCCACCGCACCAGGTGCATGCCGTACTGCAGCTC
TATCCGGAGGAGACCGACGCCAAGACCATATGCGCGGCTATTCTTAATTT
ATTTCCGCATAATTAGGCTAGGCTTAAATTTCATCAATATAATTAGATGT
GTAATTACACGCGTGTTTCTGCTTAAAGTGTAAAGTGTCGCTTTGGGACG
ACGTGGAGTCCTCGCTCGAAATTTACATATCCAGGCCAACGATGTTGGCC
GTGTCGTAGGACACCAGCCCGGCTACGGATTCCCGTGCGGACTGGCCGCG
CCTCTCGTGGATGACCCGGTGGTTACGCAGTTTGTACGCCTGCGGGAATC
CCTTGCCGCACACATCGCAGCTAAAGAGAGAGAGCAAACGTGTTTTAAAT
TGATTAGAATCCTTGATTAATTTATGTCTTCCTTATAACTTATAATATTT
AAACACTAATACTTCATTCCCTGTTTATCTAATGTTATTTACGCCTCAGG
CACCTAATAAACAATCAACTAAACTCAAAATAAAAAAAAAAAAAAAAAA

LD08718.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-RA 2175 CG10889-RA 45..2175 1..2131 10655 100 Plus
CG4936-RA 1922 CG4936-RA 1604..1922 1970..1652 1595 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15857812..15859944 2131..1 10525 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20033880..20036011 2132..1 10660 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19774711..19776842 2132..1 10660 100 Minus
Blast to na_te.dros performed 2019-03-16 08:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1516..1591 1364..1442 180 73.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6857 1301..1438 175 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2466 1282..1444 171 60 Plus
roo 9092 roo DM_ROO 9092bp 1073..1163 1366..1457 169 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2406 1366..1438 166 73 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6933 1282..1478 166 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2388..2551 1278..1435 165 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2251..2394 1298..1438 162 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6917 1282..1438 162 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6805 1366..1440 160 72 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6838 1366..1440 160 72 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6806..6946 1294..1424 158 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6794 1362..1438 152 70.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6819 1366..1433 152 73.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6817 1366..1440 151 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1606 1347..1437 148 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2502 1278..1457 148 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2511 1366..1444 146 70.9 Plus
roo 9092 roo DM_ROO 9092bp 1115..1152 1366..1403 145 86.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6851 1366..1444 144 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2538 1278..1444 139 57.7 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7964..8076 1366..1484 139 61.3 Plus
TART-C 11124 TART-C TARTC 11124bp 9408..9520 1366..1484 139 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6836..6900 1366..1433 134 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2417 1366..1440 131 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1060..1125 1365..1433 130 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2811..2868 1366..1422 125 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2613..2689 1363..1442 123 67.1 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 522..599 1360..1437 120 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1630 1363..1437 119 63.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6059..6097 1362..1400 114 76.9 Plus

LD08718.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:49:15 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15859826..15859944 1..119 99   Minus
chr3R 15857812..15859751 194..2131 99 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:41:36 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 1..1623 94..1716 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:38:41 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 1..1623 94..1716 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:57:18 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 1..1623 94..1716 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:15:32 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 1..1623 94..1716 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:51:31 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 1..1623 94..1716 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:43:09 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 45..2175 1..2131 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:38:41 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 45..2175 1..2131 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:57:18 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 45..2175 1..2131 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:15:32 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 45..2175 1..2131 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:51:31 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 46..2176 1..2131 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:49:15 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20033881..20036011 1..2131 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:49:15 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20033881..20036011 1..2131 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:49:15 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20033881..20036011 1..2131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:57:18 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15859603..15861733 1..2131 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:51:28 Download gff for LD08718.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19774712..19776842 1..2131 100   Minus

LD08718.pep Sequence

Translation from 93 to 1715

> LD08718.pep
MRIKMDCEVQEQHKQQQQQQQVHQQQQKHGSSNKLPVRKQESCSDDDESQ
SPSRTTERQNLEFAKKLGYSEQSIHSALTRLGSEAKQNELLAELIKLTAD
APRPAHIGGGGSPSSMTSTLSSPTGGSNSSGLRHIVIDGSNVALSHGNNL
VFSCRGIRICVDWFRQRGHRDITAFVPNWRKEMANNNIADQELLYELEHE
RYLVFTPSRHLDGKRVSCYDDRFILKLAVETDGIVVSNDNYRDLILESNE
FRRVVQERLLMYSFVNDIFMPPDDPLGRSGPNLDLFLCSQTQQKMADAQQ
LCPYGKKCTYGQKCKFRHHNQAPLLQRLPLQASHSAPLHTNGGQQLVSPG
GNNNNVKINSLISREPLGRTKSNTIEQVCQGFSAQMDLSEGAVESSQPNR
HKKLQRQQPPPAYRLLVPTYSAPLQQQQHQAQQQHQQSNSSTNYHHQYLT
RTPSAPVTDQGLGLPLPAHNFAHLSASDSRINEELHASQQLPREEQRRLL
RYHLGSLFPPHQVHAVLQLYPEETDAKTICAAILNLFPHN*

LD08718.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17338-PA 524 GF17338-PA 1..524 1..540 2246 82.8 Plus
Dana\GF12995-PA 420 GF12995-PA 241..418 107..287 398 43.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15642-PA 537 GG15642-PA 1..537 1..540 2493 93.7 Plus
Dere\GG22993-PA 428 GG22993-PA 275..426 133..287 395 49.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23228-PA 548 GH23228-PA 1..548 1..540 1794 68.5 Plus
Dgri\GH20323-PA 392 GH20323-PA 108..390 6..287 360 32.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-PA 540 CG10889-PA 1..540 1..540 2846 100 Plus
CG42360-PA 496 CG42360-PA 343..494 133..287 371 49.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10314-PA 549 GI10314-PA 1..549 1..540 1747 69.3 Plus
Dmoj\GI19995-PA 352 GI19995-PA 199..346 133..283 363 45.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12518-PA 531 GL12518-PA 43..531 45..540 2108 83.1 Plus
Dper\GL10231-PA 383 GL10231-PA 221..381 124..287 389 47 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10620-PA 531 GA10620-PA 43..531 45..540 2101 82.7 Plus
Dpse\GA24129-PA 446 GA24129-PA 284..444 124..287 391 47 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17697-PA 534 GM17697-PA 1..534 5..540 2760 96.3 Plus
Dsec\GM11886-PA 429 GM11886-PA 276..427 133..287 386 49 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20083-PA 538 GD20083-PA 1..538 1..540 2822 97.6 Plus
Dsim\GD11884-PA 429 GD11884-PA 276..427 133..287 385 49 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10168-PA 565 GJ10168-PA 1..565 1..540 1843 68.4 Plus
Dvir\GJ21244-PA 455 GJ21244-PA 302..449 133..283 355 45.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22795-PA 528 GK22795-PA 35..528 48..540 1550 64.5 Plus
Dwil\GK21421-PA 383 GK21421-PA 198..381 96..287 369 42.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25090-PA 536 GE25090-PA 1..536 5..540 2503 93 Plus
Dyak\GE14430-PA 428 GE14430-PA 275..426 133..287 399 49.7 Plus

LD08718.hyp Sequence

Translation from 93 to 1715

> LD08718.hyp
MRIKMDCEVQEQHKQQQQQQQVHQQQQKHGSSNKLPVRKQESCSDDDESQ
SPSRTTERQNLEFAKKLGYSEQSIHSALTRLGSEAKQNELLAELIKLTAD
APRPAHIGGGGSPSSMTSTLSSPTGGSNSSGLRHIVIDGSNVALSHGNNL
VFSCRGIRICVDWFRQRGHRDITAFVPNWRKEMANNNIADQELLYELEHE
RYLVFTPSRHLDGKRVSCYDDRFILKLAVETDGIVVSNDNYRDLILESNE
FRRVVQERLLMYSFVNDIFMPPDDPLGRSGPNLDLFLCSQTQQKMADAQQ
LCPYGKKCTYGQKCKFRHHNQAPLLQRLPLQASHSAPLHTNGGQQLVSPG
GNNNNVKINSLISREPLGRTKSNTIEQVCQGFSAQMDLSEGAVESSQPNR
HKKLQRQQPPPAYRLLVPTYSAPLQQQQHQAQQQHQQSNSSTNYHHQYLT
RTPSAPVTDQGLGLPLPAHNFAHLSASDSRINEELHASQQLPREEQRRLL
RYHLGSLFPPHQVHAVLQLYPEETDAKTICAAILNLFPHN*

LD08718.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-PA 540 CG10889-PA 1..540 1..540 2846 100 Plus
CG42360-PA 496 CG42360-PA 343..494 133..287 371 49.7 Plus