Clone LD08814 Report

Search the DGRC for LD08814

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:88
Well:14
Vector:pBS SK-
Associated Gene/TranscriptIntS11-RA
Protein status:LD08814.pep: gold
Preliminary Size:2120
Sequenced Size:2096

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1972 2001-01-01 Release 2 assignment
CG1972 2001-10-10 Blastp of sequenced clone
CG1972 2003-01-01 Sim4 clustering to Release 3
CG1972 2008-04-29 Release 5.5 accounting
CG1972 2008-08-15 Release 5.9 accounting
CG1972 2008-12-18 5.12 accounting

Clone Sequence Records

LD08814.complete Sequence

2096 bp (2096 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061097

> LD08814.complete
GCCTTGCTGTTTACAAAAATCACGGTCGACTTTTTCGACAATTTCATTTA
CCAGCGCAACAAGTGGCCGCAAGAAAGCAGGAGAGTGGAGCCGGGTGATC
CTGATCCCTTCCAGAAATGCCGGACATCAAGATAACGCCCTTGGGCGCCG
GCCAGGATGTGGGCCGCAGCTGTCTGCTGCTCTCGATGGGCGGGAAGAAC
ATAATGCTCGACTGCGGGATGCATATGGGCTACAACGACGAGCGCCGCTT
CCCGGACTTCTCCTACATAGTGCCGGAGGGTCCGATCACCAGCCACATTG
ACTGTGTGATCATCTCGCACTTCCACCTGGATCACTGCGGGGCCTTGCCC
TACATGTCAGAGATTGTGGGCTACACGGGGCCCATCTACATGACGCATCC
GACCAAGGCCATAGCACCCATCCTCCTGGAGGACATGCGGAAGGTGGCCG
TAGAGCGGAAAGGCGAGTCGAACTTCTTTACCACCCAGATGATCAAGGAC
TGCATGAAGAAGGTGATTCCCGTCACACTTCACCAGAGTATGATGGTGGA
CACGGACCTTGAGATCAAAGCCTACTATGCAGGCCATGTCCTGGGCGCCG
CCATGTTCTGGATCAAGGTGGGCTCCCAGAGCGTTGTCTACACGGGGGAC
TACAACATGACTCCAGACAGGCATCTGGGAGCCGCCTGGATAGACAAGTG
CCGGCCGGACTTGCTGATCTCCGAGAGCACCTACGCCACTACCATTAGGG
ACTCGAAGCGGTGTCGCGAGAGGGACTTCCTCAAGAAAGTTCACGAGTGC
GTGGCTAAGGGCGGCAAGGTTTTAATCCCTGTTTTTGCCCTGGGTCGCGC
CCAGGAGCTGTGCATCCTGCTGGAGACGTACTGGGAGCGCATGAACCTCA
AGTACCCCATATACTTTGCTCTGGGTCTTACCGAGAAGGCCAATACCTAC
TACAAAATGTTCATCACCTGGACGAACCAGAAGATCCGCAAGACCTTCGT
TCACCGCAACATGTTCGACTTCAAGCACATCAAGCCCTTTGACAAGGCCT
ACATCGACAATCCTGGCGCGATGGTAGTGTTCGCCACGCCAGGCATGCTG
CACGCAGGTCTTTCCCTGCAGATCTTCAAGAAGTGGGCGCCGAATGAGAA
CAACATGGTGATTATGCCCGGCTACTGTGTGCAGGGAACCGTGGGCAACA
AGATTCTCGGTGGCGCCAAGAAGGTGGAGTTCGAGAACCGCCAGGTGGTC
GAGGTCAAAATGGCCGTGGAGTACATGAGCTTCTCGGCCCATGCAGATGC
CAAAGGCATTATGCAGCTAATTCAGAACTGTGAGCCAAAGAACGTCATGC
TCGTCCATGGTGAAGCAGGGAAGATGAAGTTCCTGCGCTCGAAGATCAAA
GACGAATTCAACCTGGAAACCTACATGCCGGCCAACGGCGAAACCTGTGT
GATTTCTACGCCTGTGAAGATACCAGTAGATGCGTCCGTTTCCCTGCTTA
AAGCAGAGGCCCGGTCCTACAACGCCCAGCCACCGGATCCCAAGAGGCGG
CGACTAATCCATGGCGTCCTCGTAATGAAGGACAATCGAATAATGCTGCA
AAACCTAACCGATGCCCTGAAGGAAATCGGAATTAATCGACATGTTATGC
GATTTACATCCAAGGTCAAAATGGACGACTCCGGACCGGTCATTCGCACA
AGCGAAAGACTGAAGACTCTGCTCGAAGAAAAGCTAGCCGGCTGGACGGT
GACGATGCAGGAGAACGGCTCCATAGCCATCGAATCCGTTGAGGTGAAGG
TGGAGGAGGACGAGAAGGATCCCAAGCAGAAGAACATTTTGATATCGTGG
ACCAACCAGGACGAGGACATTGGAGCCTACATACTGAATGTGCTGCAGAA
TATGTGCTAGGCAACGAAGAAGCATCCCATTGAAATCCCACGCCTTAATT
CCATAGATAAGCACAAAGTGTAGATACCACCAATTTCTGAAAGTTTAAAG
AGTATCAAAATATACATAAACGTTCCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD08814.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1972-RA 2123 CG1972-RA 67..2094 1..2028 10140 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25568365..25569341 330..1306 4705 98.8 Plus
chr3R 27901430 chr3R 25569394..25570116 1304..2026 3450 98.5 Plus
chr3R 27901430 chr3R 25567957..25568286 1..330 1650 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29745762..29746738 330..1306 4885 100 Plus
3R 32079331 3R 29746791..29747515 1304..2028 3625 100 Plus
3R 32079331 3R 29745354..29745683 1..330 1650 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29486593..29487569 330..1306 4885 100 Plus
3R 31820162 3R 29487622..29488346 1304..2028 3625 100 Plus
3R 31820162 3R 29486185..29486514 1..330 1650 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:17:35 has no hits.

LD08814.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:18:23 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25567957..25568286 1..330 100 -> Plus
chr3R 25568366..25569340 331..1305 98 -> Plus
chr3R 25569396..25570116 1306..2026 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:41:40 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
CG1972-RA 1..1794 117..1910 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:47 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
CG1972-RA 1..1794 117..1910 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:51:07 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
IntS11-RA 1..1794 117..1910 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:49 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
CG1972-RA 1..1794 117..1910 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:18 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
IntS11-RA 1..1794 117..1910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:35 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
CG1972-RA 1..2026 1..2026 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:46 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
CG1972-RA 1..2026 1..2026 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:07 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
IntS11-RA 18..2043 1..2026 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:49 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
CG1972-RA 1..2026 1..2026 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:18 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
IntS11-RA 18..2043 1..2026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:23 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29745354..29745683 1..330 100 -> Plus
3R 29745763..29746737 331..1305 100 -> Plus
3R 29746793..29747513 1306..2026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:23 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29745354..29745683 1..330 100 -> Plus
3R 29745763..29746737 331..1305 100 -> Plus
3R 29746793..29747513 1306..2026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:23 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29745354..29745683 1..330 100 -> Plus
3R 29745763..29746737 331..1305 100 -> Plus
3R 29746793..29747513 1306..2026 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:07 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25571076..25571405 1..330 100 -> Plus
arm_3R 25571485..25572459 331..1305 100 -> Plus
arm_3R 25572515..25573235 1306..2026 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:45:55 Download gff for LD08814.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29486185..29486514 1..330 100 -> Plus
3R 29486594..29487568 331..1305 100 -> Plus
3R 29487624..29488344 1306..2026 100   Plus

LD08814.pep Sequence

Translation from 116 to 1909

> LD08814.pep
MPDIKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSY
IVPEGPITSHIDCVIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIA
PILLEDMRKVAVERKGESNFFTTQMIKDCMKKVIPVTLHQSMMVDTDLEI
KAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLL
ISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRAQELCI
LLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMF
DFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM
PGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQ
LIQNCEPKNVMLVHGEAGKMKFLRSKIKDEFNLETYMPANGETCVISTPV
KIPVDASVSLLKAEARSYNAQPPDPKRRRLIHGVLVMKDNRIMLQNLTDA
LKEIGINRHVMRFTSKVKMDDSGPVIRTSERLKTLLEEKLAGWTVTMQEN
GSIAIESVEVKVEEDEKDPKQKNILISWTNQDEDIGAYILNVLQNMC*

LD08814.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23370-PA 597 GF23370-PA 1..597 1..597 3190 98.3 Plus
Dana\GF18101-PA 684 GF18101-PA 18..505 4..499 838 36.8 Plus
Dana\GF16269-PA 756 GF16269-PA 5..392 4..383 379 27.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11690-PA 597 GG11690-PA 1..597 1..597 3214 99.3 Plus
Dere\GG16362-PA 684 GG16362-PA 10..456 1..440 836 38.8 Plus
Dere\GG11633-PA 756 GG11633-PA 5..392 4..383 374 26.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14325-PA 597 GH14325-PA 1..597 1..597 3092 96 Plus
Dgri\GH19212-PA 686 GH19212-PA 12..458 1..440 838 39.6 Plus
Dgri\GH10247-PA 754 GH10247-PA 5..392 4..383 355 27.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
IntS11-PA 597 CG1972-PA 1..597 1..597 3148 100 Plus
Cpsf73-PA 684 CG7698-PA 10..456 1..440 817 39 Plus
Cpsf100-PA 756 CG1957-PA 5..392 4..383 359 26.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10422-PA 597 GI10422-PA 1..597 1..597 3115 95.5 Plus
Dmoj\GI24246-PA 686 GI24246-PA 20..574 4..578 842 34.9 Plus
Dmoj\GI23051-PA 754 GI23051-PA 5..392 4..383 354 27.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23717-PA 597 GL23717-PA 1..597 1..597 3133 96.5 Plus
Dper\GL23169-PA 684 GL23169-PA 18..572 4..578 842 34.5 Plus
Dper\GL24248-PA 583 GL24248-PA 1..218 178..383 209 26.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15164-PA 597 GA15164-PA 1..597 1..597 3151 97 Plus
Dpse\GA20526-PA 684 GA20526-PA 18..572 4..578 841 34.5 Plus
Dpse\GA26549-PA 731 GA26549-PA 5..392 4..383 365 26.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12816-PA 597 GM12816-PA 1..597 1..597 3226 99.7 Plus
Dsec\GM18692-PA 684 GM18692-PA 10..456 1..440 840 39 Plus
Dsec\GM12754-PA 743 GM12754-PA 5..392 4..383 371 26.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21460-PA 597 GD21460-PA 1..597 1..597 3226 99.7 Plus
Dsim\GD20157-PA 684 GD20157-PA 10..456 1..440 837 39 Plus
Dsim\GD21403-PA 664 GD21403-PA 17..300 116..383 280 26.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10637-PA 597 GJ10637-PA 1..597 1..597 3151 96.5 Plus
Dvir\GJ10819-PA 686 GJ10819-PA 20..574 4..578 840 34.9 Plus
Dvir\GJ24636-PA 693 GJ24636-PA 5..392 4..383 356 27.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11920-PA 597 GK11920-PA 1..597 1..597 3116 95.8 Plus
Dwil\GK13096-PA 684 GK13096-PA 18..456 4..440 832 38.9 Plus
Dwil\GK22564-PA 757 GK22564-PA 5..390 4..381 360 26.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23879-PA 597 GE23879-PA 1..597 1..597 3216 99.5 Plus
Dyak\GE25184-PA 684 GE25184-PA 10..456 1..440 839 39 Plus
Dyak\GE26465-PB 548 GE26465-PB 5..392 4..383 374 26.8 Plus
Dyak\GE26465-PA 756 GE23822-PA 5..392 4..383 374 26.8 Plus

LD08814.hyp Sequence

Translation from 116 to 1909

> LD08814.hyp
MPDIKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSY
IVPEGPITSHIDCVIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIA
PILLEDMRKVAVERKGESNFFTTQMIKDCMKKVIPVTLHQSMMVDTDLEI
KAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLL
ISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRAQELCI
LLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMF
DFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM
PGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQ
LIQNCEPKNVMLVHGEAGKMKFLRSKIKDEFNLETYMPANGETCVISTPV
KIPVDASVSLLKAEARSYNAQPPDPKRRRLIHGVLVMKDNRIMLQNLTDA
LKEIGINRHVMRFTSKVKMDDSGPVIRTSERLKTLLEEKLAGWTVTMQEN
GSIAIESVEVKVEEDEKDPKQKNILISWTNQDEDIGAYILNVLQNMC*

LD08814.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
IntS11-PA 597 CG1972-PA 1..597 1..597 3148 100 Plus
Cpsf73-PA 684 CG7698-PA 10..456 1..440 817 39 Plus
Cpsf100-PA 756 CG1957-PA 5..392 4..383 359 26.5 Plus