Clone LD08826 Report

Search the DGRC for LD08826

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:88
Well:26
Vector:pBS SK-
Associated Gene/TranscriptCG12935-RA
Protein status:LD08826.pep: gold
Preliminary Size:1343
Sequenced Size:1232

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12935 2001-01-01 Release 2 assignment
CG12935 2002-05-17 Blastp of sequenced clone
CG12935 2003-01-01 Sim4 clustering to Release 3
CG12935 2008-04-29 Release 5.5 accounting
CG12935 2008-08-15 Release 5.9 accounting
CG12935 2008-12-18 5.12 accounting

Clone Sequence Records

LD08826.complete Sequence

1232 bp (1232 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118499

> LD08826.complete
CAAAATCATATGTTGTTACTAGGGCTGTATAGCTAAACGTTTTATTTATG
GGAGCAGAACTATTAAGTGCCAGTTGGAACTAAGACGTGATCTCCCCTGT
CCCTTCTTTTGCTTAAAACTGAATCATATTGACAAATGTTTTCGGCCCGT
TTAAGTAATGTGACGTTCTCATGAAATACAACGGTGAACATTGCAAAAAT
CGTGTTATTTTCGTTAATTGTTCCAATGGGTGAACTAGTGAACGGAGTCA
GCATGTGCCAGCCCTGATGGCTGCTTTGTTGAACTAGTTCCAGTTCCGGA
GCTAGTGAACCAATAGCAAACGGAACAAAACAAAAACATCTGTAGATTAT
AGGTTAATTTGTTTTATAATAACAAATGCGGGAATTATTCAATTAAGATG
AGCAATCTGCTGAATTTTGCCCTGCGGCAGGGCGTCAACTCCATCAAGCG
CCTTAGCCTCCAGAGTTTCAGACTGGCAGCTCCGGCCATTGTAACAAAAA
CGCCGGTTACTTCCACGATAAAGAGATTCTCCTCCCAAGCCGCCCCCTTC
GATGTGAACACCAGTGTCCCCAAGGACATAATACTTTTCAAGTATGAAAA
CCCCCGATTCTACCAGATGCTTAACTTTTTCGGGGTGTGTCAGTTTGTTT
TCTGGACATATCTCTCGCACTTCGCCTTCACGACGCTTAAGGATGCTCCA
GTGGTGGAAAAACCCGGAGAGGAGCTGAAGTGGTTCCAGCGCATAAATCT
GGGCGATAATAAGTACAGAAATGGCATTACAGCCTGTAGCTTTCTGATAG
GATATGGCATACTGTTTGCTGTCTGGATGTTTACCCTGCGATCGGTGCGT
TTTCTTATCTTGAGAAAGGGTGGTCAGAGCGTTTCCTTTGTGACCTACGG
TCCCTTCAACCGGAATCGCATTATGACCGTGCCATTAAAGTGCGTCTCCG
CCGAGGAATCACGGAACATGGCCAGGGTGCAGCTACCCATTAAGGTGAAG
GGCAAGACACTGTATTACGTCCTGGATATGCGTGGCGAGTTTCGGAATGG
CGAGTTATTCGATTACACGGCGGGCCTCAAGCGTCGCATTTAAAGGGCAA
GTTTTGTTGTTTTGTAGCTTATTATTTGTAAATAAAGATGTACACTAATT
AAAACTAAAATGCGGCTTAGTAAATGGGCTCCGGCTTCTGGGTGAGCAGC
AGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD08826.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12935-RA 1213 CG12935-RA 1..1208 1..1208 6040 100 Plus
CG7637-RA 528 CG7637-RA 293..528 1208..973 1180 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6696930..6697730 1..801 3990 99.9 Plus
chr2R 21145070 chr2R 6697786..6698193 798..1205 2040 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10809392..10810192 1..801 4005 100 Plus
2R 25286936 2R 10810248..10810658 798..1208 2055 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10810591..10811391 1..801 4005 100 Plus
2R 25260384 2R 10811447..10811857 798..1208 2055 100 Plus
Blast to na_te.dros performed 2019-03-15 20:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 2986..3099 282..392 149 61.7 Plus

LD08826.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:19:41 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6696930..6697729 1..800 99 -> Plus
chr2R 6697789..6698193 801..1205 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:41:42 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 1..696 398..1093 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:48:59 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 1..696 398..1093 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:51:14 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 1..696 398..1093 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:41:32 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 1..696 398..1093 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:31 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 1..696 398..1093 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:25:48 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 1..1204 2..1205 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:48:59 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 1..1204 2..1205 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:14 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 1..1200 6..1205 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:41:32 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 1..1204 2..1205 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:31 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG12935-RA 1..1200 6..1205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:19:41 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10809392..10810191 1..800 100 -> Plus
2R 10810251..10810655 801..1205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:19:41 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10809392..10810191 1..800 100 -> Plus
2R 10810251..10810655 801..1205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:19:41 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10809392..10810191 1..800 100 -> Plus
2R 10810251..10810655 801..1205 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:14 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6696897..6697696 1..800 100 -> Plus
arm_2R 6697756..6698160 801..1205 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:13:50 Download gff for LD08826.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10811450..10811854 801..1205 100   Plus
2R 10810591..10811390 1..800 100 -> Plus

LD08826.pep Sequence

Translation from 397 to 1092

> LD08826.pep
MSNLLNFALRQGVNSIKRLSLQSFRLAAPAIVTKTPVTSTIKRFSSQAAP
FDVNTSVPKDIILFKYENPRFYQMLNFFGVCQFVFWTYLSHFAFTTLKDA
PVVEKPGEELKWFQRINLGDNKYRNGITACSFLIGYGILFAVWMFTLRSV
RFLILRKGGQSVSFVTYGPFNRNRIMTVPLKCVSAEESRNMARVQLPIKV
KGKTLYYVLDMRGEFRNGELFDYTAGLKRRI*

LD08826.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13775-PA 233 GF13775-PA 1..233 1..231 1093 88.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20148-PA 231 GG20148-PA 1..231 1..231 1190 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21270-PA 229 GH21270-PA 1..229 1..231 977 79.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12935-PB 231 CG12935-PB 1..231 1..231 1198 100 Plus
CG12935-PA 231 CG12935-PA 1..231 1..231 1198 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20396-PA 231 GI20396-PA 1..231 1..231 1009 80.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17306-PA 231 GL17306-PA 1..231 1..231 1067 84.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11921-PA 231 GA11921-PA 1..231 1..231 1067 84.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21237-PA 231 GM21237-PA 1..231 1..231 1216 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10755-PA 231 GD10755-PA 1..231 1..231 1216 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22225-PA 231 GJ22225-PA 1..231 1..231 1029 84 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19663-PA 229 GK19663-PA 1..229 1..231 961 78.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12837-PA 231 GE12837-PA 1..231 1..231 1182 95.7 Plus

LD08826.hyp Sequence

Translation from 397 to 1092

> LD08826.hyp
MSNLLNFALRQGVNSIKRLSLQSFRLAAPAIVTKTPVTSTIKRFSSQAAP
FDVNTSVPKDIILFKYENPRFYQMLNFFGVCQFVFWTYLSHFAFTTLKDA
PVVEKPGEELKWFQRINLGDNKYRNGITACSFLIGYGILFAVWMFTLRSV
RFLILRKGGQSVSFVTYGPFNRNRIMTVPLKCVSAEESRNMARVQLPIKV
KGKTLYYVLDMRGEFRNGELFDYTAGLKRRI*

LD08826.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12935-PB 231 CG12935-PB 1..231 1..231 1198 100 Plus
CG12935-PA 231 CG12935-PA 1..231 1..231 1198 100 Plus