BDGP Sequence Production Resources |
Search the DGRC for LD08867
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 88 |
Well: | 67 |
Vector: | pBS SK- |
Associated Gene/Transcript | DIP1-RD |
Protein status: | LD08867.pep: gold |
Preliminary Size: | 2414 |
Sequenced Size: | 2241 |
Gene | Date | Evidence |
---|---|---|
DIP1 | 2009-02-12 | Manual selection by Sue Celniker |
2241 bp assembled on 2009-08-11
GenBank Submission: BT099548.1
> LD08867.complete CTTTCTGTGACCTGAGCAGTGAAAAATTAAATTACAAAAGCGAAAAAGCG AATTACAAAAGTGAAAAATTAAATTACAAAAAAAATCAAGATGAAGCGAA ATCGTCGTGCATTTGCTGGAAACAACAAGCCATTTGTCTTTGGAGGCATT TACAATCCCAATGCCACCGTCAAGCCTTTGATCCAAATGCCGTTGCAGGC CGCCAATGTCCAGGAGCAGCAGTCTTCTCCGGTGGCTTTATATCCGACAT CGGCCTCCCCGGTGGCTGTTCAATCGCCACAGGACGCATTTTTGGCTGTT CAGTCGCCAGGGGCTCCTGCCCCCGTTCAACTGGCCAACTCGTCCGACCA GCAGAATAATCCGGATGCGGACGCCATTGCCTCCAAACTGCCCATGCCAG TTATCATCAAGGAGGAGCCGATCTCTGTCAACGATGAACCGTCCGTCGAC AATATAGAGGACAATACCAGTGCCAGTACCAGTGCCAGCGGCATCGGGGG CAAGATCCCATTTAAAAAAATCTTCCAAAAGCGCAAGAAGTCGTCTGAAC GCACTCGGGACAAGAAGTTGCGACAGAACCGCCAGCTGCGCAAGTCCATG CTCCCCAAGAACGCTCTGATGGCCCTCAACGAGGTGAAGGGCGTGACCAT CAGCGATTTCACCATCGACAGCAATACCGACGGGGGATTCACGGCCGTTG TCACTGTCAACTCGAATCAGTACGAGGGCAAGGGTACCTCGAAAATGACA GCCAAGAACGCGGCCTGCGAGAAGGCTTGGCGCGATTTTATTATTGCAAA AATGACCCCCAAGCCGCCCCGTATTCACCAGGTGGAGATGGGTTCGGAGC CAATGGATATCAACGAGGATGAGGCCGATGCACCGGATGATGATCTGCCC ATGTTGAATCTGGCCTCGTTTGCCATCTACAAGCTGTTCGCGGAGTGGGA ACGGGAGGGCTATGTCGTGCCCGAGATGCACCCTTCGGCCAATGCTGCCC AACAGGCGGGAGGGGATGCCGGAACTCCAGTTCCCCCCGTGCCGAAGGAG CCAAAGAAGCCGCCAGTGCGCACCGAGCTACCCTCTGGCTGGGAGACCAT GCACCCGGCGACCATTCTTTGCATTATGCGTCCGGGACTCAACTACGTGG ACTACGGGTCATCTGGCGACAAGACCAACGGCATGCAGCATCTGGGAATC ATGGTGGACAACCAGGAGTTCCACGCCAACGGCAGATCAAAGAAAATCGC CCGTCGCAACGTGGCCGTGAAAGTGTGCAACTCTCTGTTCGGCACCAACT TCACCTACAGCGACACCACTTAAGACACCAACTCCAACCGCAGACTCCAA CTGCCGACGACAACACACATAACGGACACTCTTAACGGACAGCAATCAGA AGATTGCGACCCTGACGTCAATTGCGCAACTTTAAGCGACACCACTTAAG ACACCAACTCCAACCGCAGACTCCAACTGCAGACGACAACACACCTATGC CTCTCTTAACGGACAGCAATCAGAAGATTGCGACCCTGACGTCAATGGCG CAACTTTAAGCGACACCACTTAAGACACCAACTCCAACCGCAGACTCCAA CTGCAGACGACAACACACCTATGCCTCTCTTAACGGACAGCAATCGGAAG ATTGCGACCCTGACGTCAATTGCGCAACTTTAAGCGACACCACTTAAGAC ACCAACTCCAACCGCAGACTCCAACTGCCGACGACAACACACCTATGCCT CTCTTAACGGACAGCAATCAGAAGATTGCGACCCTGACGTCAATGGCGCA ACTTTAAGCGACACCACTTAAGACACCAACTCCAACCGCAGACTCCAACT GCCGACGACAACACACCTATGCCTCTCTTAACGGACAGCAATCGGAAGAT TGCGACCCTGACGTCAATGGCGCAACTTTAAGCGACACCACTTAAGACAC CAACTCCAACCGCAGACTCCAACTGCCGACGACAACACACCTATGCCTCT CTTAACGGACAGCAATCGGAAGATTGCGACCCTGACGTCAATGGCGCAAC TTTAAGCGACACCACTTAAGACACCAACTCCAACCGCAGACTCCAACTGC CGACGACAACACACCTATGCCTCTCTTAACGGACAGCAATCAGAAGATTG CGACCCTGACGTCAATGGCGCAACTTTAAGAATTCCTTTTCTGTCAAAGT GAAGAGGCATATTAAACAAGAATTAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
klett.l | 3178 | klett.l | 27..2250 | 1..2224 | 11120 | 100 | Plus |
klett-RD | 2250 | klett-RD | 27..2250 | 1..2224 | 11120 | 100 | Plus |
klett-RJ | 2148 | klett-RJ | 1..1369 | 4..1372 | 6830 | 99.9 | Plus |
klett-RJ | 2148 | klett-RJ | 1363..2144 | 1443..2224 | 3910 | 100 | Plus |
klett-RJ | 2148 | klett-RJ | 1423..2100 | 1379..2056 | 3270 | 98.8 | Plus |
klett-RJ | 2148 | klett-RJ | 1306..1365 | 1807..1866 | 300 | 100 | Plus |
klett-RJ | 2148 | klett-RJ | 1306..1365 | 1931..1990 | 300 | 100 | Plus |
klett-RJ | 2148 | klett-RJ | 1306..1365 | 2055..2114 | 300 | 100 | Plus |
klett-RJ | 2148 | klett-RJ | 1727..1786 | 1309..1368 | 300 | 100 | Plus |
klett-RJ | 2148 | klett-RJ | 1603..1662 | 1309..1368 | 300 | 100 | Plus |
klett-RJ | 2148 | klett-RJ | 1306..1365 | 1683..1742 | 300 | 100 | Plus |
klett-RJ | 2148 | klett-RJ | 1975..2034 | 1309..1368 | 300 | 100 | Plus |
klett-RJ | 2148 | klett-RJ | 1851..1910 | 1309..1368 | 300 | 100 | Plus |
klett-RJ | 2148 | klett-RJ | 1479..1538 | 1309..1368 | 285 | 98.3 | Plus |
klett-RJ | 2148 | klett-RJ | 1306..1365 | 1435..1494 | 285 | 98.3 | Plus |
klett-RJ | 2148 | klett-RJ | 1306..1365 | 1559..1618 | 285 | 98.3 | Plus |
klett-RJ | 2148 | klett-RJ | 1363..1414 | 1317..1368 | 245 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 21490312..21491410 | 2224..1126 | 5495 | 100 | Minus |
chrX | 22417052 | chrX | 21490356..21491101 | 2056..1309 | 3480 | 98 | Minus |
chrX | 22417052 | chrX | 21490480..21491227 | 2180..1435 | 3480 | 98 | Minus |
chrX | 22417052 | chrX | 21491471..21492049 | 1125..547 | 2895 | 100 | Minus |
chrX | 22417052 | chrX | 21490356..21490977 | 1932..1309 | 2890 | 97.9 | Minus |
chrX | 22417052 | chrX | 21490604..21491227 | 2180..1559 | 2890 | 97.9 | Minus |
chrX | 22417052 | chrX | 21490356..21490853 | 1808..1309 | 2300 | 97.8 | Minus |
chrX | 22417052 | chrX | 21490728..21491227 | 2180..1683 | 2300 | 97.8 | Minus |
chrX | 22417052 | chrX | 21493519..21493912 | 547..154 | 1970 | 100 | Minus |
chrX | 22417052 | chrX | 21490356..21490729 | 1684..1309 | 1650 | 96.5 | Minus |
chrX | 22417052 | chrX | 21490852..21491227 | 2180..1807 | 1650 | 96.5 | Minus |
chrX | 22417052 | chrX | 21490356..21490605 | 1560..1309 | 1090 | 96.4 | Minus |
chrX | 22417052 | chrX | 21490976..21491227 | 2180..1931 | 1090 | 96.4 | Minus |
chrX | 22417052 | chrX | 21495132..21495284 | 153..1 | 765 | 100 | Minus |
chrX | 22417052 | chrX | 21490356..21490481 | 1436..1309 | 500 | 94.5 | Minus |
chrX | 22417052 | chrX | 21491100..21491227 | 2180..2055 | 500 | 94.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 21625154..21626252 | 2224..1126 | 5495 | 100 | Minus |
X | 23542271 | X | 21625198..21625943 | 2056..1309 | 3480 | 98 | Minus |
X | 23542271 | X | 21625322..21626069 | 2180..1435 | 3480 | 98 | Minus |
X | 23542271 | X | 21626313..21626891 | 1125..547 | 2895 | 100 | Minus |
X | 23542271 | X | 21625198..21625819 | 1932..1309 | 2890 | 97.9 | Minus |
X | 23542271 | X | 21625446..21626069 | 2180..1559 | 2890 | 97.9 | Minus |
X | 23542271 | X | 21625198..21625695 | 1808..1309 | 2300 | 97.8 | Minus |
X | 23542271 | X | 21625570..21626069 | 2180..1683 | 2300 | 97.8 | Minus |
X | 23542271 | X | 21628361..21628754 | 547..154 | 1970 | 100 | Minus |
X | 23542271 | X | 21625198..21625571 | 1684..1309 | 1650 | 96.5 | Minus |
X | 23542271 | X | 21625694..21626069 | 2180..1807 | 1650 | 96.5 | Minus |
X | 23542271 | X | 21625198..21625447 | 1560..1309 | 1090 | 96.4 | Minus |
X | 23542271 | X | 21625818..21626069 | 2180..1931 | 1090 | 96.4 | Minus |
X | 23542271 | X | 21629974..21630126 | 153..1 | 765 | 100 | Minus |
X | 23542271 | X | 21625198..21625323 | 1436..1309 | 500 | 94.5 | Minus |
X | 23542271 | X | 21625942..21626069 | 2180..2055 | 500 | 94.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 21610246..21611344 | 2224..1126 | 5495 | 100 | Minus |
X | 23527363 | X | 21611405..21611983 | 1125..547 | 2895 | 100 | Minus |
X | 23527363 | X | 21613453..21613846 | 547..154 | 1970 | 100 | Minus |
X | 23527363 | X | 21615066..21615218 | 153..1 | 765 | 100 | Minus |
X | 23527363 | X | 21603057..21603098 | 1234..1193 | 165 | 92.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 21490312..21491410 | 1126..2224 | 100 | <- | Minus |
chrX | 21491471..21492048 | 548..1125 | 100 | <- | Minus |
chrX | 21493519..21493912 | 154..547 | 100 | <- | Minus |
chrX | 21495132..21495284 | 1..153 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DIP1-RD | 1..1233 | 91..1323 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DIP1-RD | 1..1233 | 91..1323 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DIP1-RD | 1..1233 | 91..1323 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DIP1-RD | 1..1233 | 91..1323 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DIP1-RD | 33..2256 | 1..2224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DIP1-RD | 33..2256 | 1..2224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DIP1-RD | 33..2256 | 1..2224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DIP1-RD | 23..2246 | 1..2224 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21625154..21626252 | 1126..2224 | 100 | <- | Minus |
X | 21626313..21626890 | 548..1125 | 100 | <- | Minus |
X | 21628361..21628754 | 154..547 | 100 | <- | Minus |
X | 21629974..21630126 | 1..153 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21625154..21626252 | 1126..2224 | 100 | <- | Minus |
X | 21626313..21626890 | 548..1125 | 100 | <- | Minus |
X | 21628361..21628754 | 154..547 | 100 | <- | Minus |
X | 21629974..21630126 | 1..153 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21625154..21626252 | 1126..2224 | 100 | <- | Minus |
X | 21626313..21626890 | 548..1125 | 100 | <- | Minus |
X | 21628361..21628754 | 154..547 | 100 | <- | Minus |
X | 21629974..21630126 | 1..153 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 21501001..21501153 | 1..153 | 100 | Minus | |
arm_X | 21499388..21499781 | 154..547 | 100 | <- | Minus |
arm_X | 21496181..21497279 | 1126..2224 | 100 | <- | Minus |
arm_X | 21497340..21497917 | 548..1125 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21610246..21611344 | 1126..2224 | 100 | <- | Minus |
X | 21611405..21611982 | 548..1125 | 100 | <- | Minus |
X | 21613453..21613846 | 154..547 | 100 | <- | Minus |
X | 21615066..21615218 | 1..153 | 100 | Minus |
Translation from 90 to 1322
> LD08867.pep MKRNRRAFAGNNKPFVFGGIYNPNATVKPLIQMPLQAANVQEQQSSPVAL YPTSASPVAVQSPQDAFLAVQSPGAPAPVQLANSSDQQNNPDADAIASKL PMPVIIKEEPISVNDEPSVDNIEDNTSASTSASGIGGKIPFKKIFQKRKK SSERTRDKKLRQNRQLRKSMLPKNALMALNEVKGVTISDFTIDSNTDGGF TAVVTVNSNQYEGKGTSKMTAKNAACEKAWRDFIIAKMTPKPPRIHQVEM GSEPMDINEDEADAPDDDLPMLNLASFAIYKLFAEWEREGYVVPEMHPSA NAAQQAGGDAGTPVPPVPKEPKKPPVRTELPSGWETMHPATILCIMRPGL NYVDYGSSGDKTNGMQHLGIMVDNQEFHANGRSKKIARRNVAVKVCNSLF GTNFTYSDTT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10760-PA | 296 | GF10760-PA | 63..295 | 146..405 | 315 | 32.2 | Plus |
Dana\GF20931-PA | 106 | GF20931-PA | 1..103 | 1..114 | 169 | 44.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17525-PA | 395 | GG17525-PA | 1..395 | 1..410 | 1627 | 80.1 | Plus |
Dere\GG14132-PA | 310 | GG14132-PA | 24..308 | 77..404 | 357 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17808-PA | 279 | GH17808-PA | 6..277 | 136..406 | 1036 | 71.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
DIP1-PD | 410 | CG17686-PD | 1..410 | 1..410 | 2135 | 100 | Plus |
DIP1-PC | 395 | CG17686-PC | 1..395 | 1..410 | 2031 | 96.3 | Plus |
DIP1-PB | 409 | CG17686-PB | 19..409 | 20..410 | 2022 | 99.5 | Plus |
DIP1-PI | 378 | CG17686-PI | 1..378 | 33..410 | 1964 | 100 | Plus |
DIP1-PG | 378 | CG17686-PG | 1..378 | 33..410 | 1964 | 100 | Plus |
DIP1-PE | 378 | CG17686-PE | 1..378 | 33..410 | 1964 | 100 | Plus |
DIP1-PF | 394 | CG17686-PF | 18..394 | 34..410 | 1959 | 100 | Plus |
DIP1-PH | 309 | CG17686-PH | 1..309 | 102..410 | 1621 | 100 | Plus |
CG12493-PB | 293 | CG12493-PB | 11..290 | 81..404 | 373 | 32.4 | Plus |
CG12493-PA | 296 | CG12493-PA | 11..293 | 81..404 | 362 | 32.1 | Plus |
blanks-PA | 324 | CG10630-PA | 55..321 | 108..404 | 353 | 31 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14602-PA | 338 | GI14602-PA | 7..337 | 91..408 | 1106 | 66.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13431-PA | 392 | GL13431-PA | 1..391 | 1..408 | 1197 | 60.4 | Plus |
Dper\GL27226-PA | 244 | GL27226-PA | 1..241 | 170..405 | 611 | 52.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14612-PA | 392 | GA14612-PA | 1..391 | 1..408 | 1201 | 60.7 | Plus |
Dpse\GA26778-PA | 311 | GA26778-PA | 23..308 | 144..405 | 575 | 45.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13527-PA | 400 | GM13527-PA | 1..399 | 1..409 | 1820 | 87.3 | Plus |
Dsec\GM13531-PA | 392 | GM13531-PA | 1..391 | 1..409 | 1786 | 86.3 | Plus |
Dsec\GM19639-PA | 396 | GM19639-PA | 1..395 | 1..409 | 1771 | 85.6 | Plus |
Dsec\GM19640-PA | 396 | GM19640-PA | 1..395 | 1..409 | 1770 | 85.6 | Plus |
Dsec\GM19637-PA | 364 | GM19637-PA | 1..363 | 33..409 | 1699 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24670-PA | 400 | GD24670-PA | 1..399 | 1..409 | 1863 | 89.2 | Plus |
Dsim\GD15489-PA | 380 | GD15489-PA | 1..379 | 1..409 | 1552 | 77.3 | Plus |
Dsim\GD24430-PA | 110 | GD24430-PA | 7..110 | 307..410 | 492 | 85.6 | Plus |
Dsim\GD15488-PA | 130 | GD15488-PA | 1..111 | 1..114 | 409 | 73.7 | Plus |
Dsim\GD13198-PA | 257 | GD13198-PA | 29..254 | 154..404 | 356 | 35.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19010-PA | 375 | GJ19010-PA | 1..374 | 1..408 | 1017 | 56.8 | Plus |
Dvir\GJ10989-PA | 199 | GJ10989-PA | 1..199 | 170..406 | 419 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25242-PA | 412 | GK25242-PA | 1..407 | 1..404 | 1144 | 57.1 | Plus |
Translation from 90 to 1322
> LD08867.hyp MKRNRRAFAGNNKPFVFGGIYNPNATVKPLIQMPLQAANVQEQQSSPVAL YPTSASPVAVQSPQDAFLAVQSPGAPAPVQLANSSDQQNNPDADAIASKL PMPVIIKEEPISVNDEPSVDNIEDNTSASTSASGIGGKIPFKKIFQKRKK SSERTRDKKLRQNRQLRKSMLPKNALMALNEVKGVTISDFTIDSNTDGGF TAVVTVNSNQYEGKGTSKMTAKNAACEKAWRDFIIAKMTPKPPRIHQVEM GSEPMDINEDEADAPDDDLPMLNLASFAIYKLFAEWEREGYVVPEMHPSA NAAQQAGGDAGTPVPPVPKEPKKPPVRTELPSGWETMHPATILCIMRPGL NYVDYGSSGDKTNGMQHLGIMVDNQEFHANGRSKKIARRNVAVKVCNSLF GTNFTYSDTT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
DIP1-PD | 410 | CG17686-PD | 1..410 | 1..410 | 2135 | 100 | Plus |
DIP1-PC | 395 | CG17686-PC | 1..395 | 1..410 | 2031 | 96.3 | Plus |
DIP1-PB | 409 | CG17686-PB | 19..409 | 20..410 | 2022 | 99.5 | Plus |
DIP1-PI | 378 | CG17686-PI | 1..378 | 33..410 | 1964 | 100 | Plus |
DIP1-PG | 378 | CG17686-PG | 1..378 | 33..410 | 1964 | 100 | Plus |