Clone LD08867 Report

Search the DGRC for LD08867

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:88
Well:67
Vector:pBS SK-
Associated Gene/TranscriptDIP1-RD
Protein status:LD08867.pep: gold
Preliminary Size:2414
Sequenced Size:2241

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
DIP1 2009-02-12 Manual selection by Sue Celniker

Clone Sequence Records

LD08867.complete Sequence

2241 bp assembled on 2009-08-11

GenBank Submission: BT099548.1

> LD08867.complete
CTTTCTGTGACCTGAGCAGTGAAAAATTAAATTACAAAAGCGAAAAAGCG
AATTACAAAAGTGAAAAATTAAATTACAAAAAAAATCAAGATGAAGCGAA
ATCGTCGTGCATTTGCTGGAAACAACAAGCCATTTGTCTTTGGAGGCATT
TACAATCCCAATGCCACCGTCAAGCCTTTGATCCAAATGCCGTTGCAGGC
CGCCAATGTCCAGGAGCAGCAGTCTTCTCCGGTGGCTTTATATCCGACAT
CGGCCTCCCCGGTGGCTGTTCAATCGCCACAGGACGCATTTTTGGCTGTT
CAGTCGCCAGGGGCTCCTGCCCCCGTTCAACTGGCCAACTCGTCCGACCA
GCAGAATAATCCGGATGCGGACGCCATTGCCTCCAAACTGCCCATGCCAG
TTATCATCAAGGAGGAGCCGATCTCTGTCAACGATGAACCGTCCGTCGAC
AATATAGAGGACAATACCAGTGCCAGTACCAGTGCCAGCGGCATCGGGGG
CAAGATCCCATTTAAAAAAATCTTCCAAAAGCGCAAGAAGTCGTCTGAAC
GCACTCGGGACAAGAAGTTGCGACAGAACCGCCAGCTGCGCAAGTCCATG
CTCCCCAAGAACGCTCTGATGGCCCTCAACGAGGTGAAGGGCGTGACCAT
CAGCGATTTCACCATCGACAGCAATACCGACGGGGGATTCACGGCCGTTG
TCACTGTCAACTCGAATCAGTACGAGGGCAAGGGTACCTCGAAAATGACA
GCCAAGAACGCGGCCTGCGAGAAGGCTTGGCGCGATTTTATTATTGCAAA
AATGACCCCCAAGCCGCCCCGTATTCACCAGGTGGAGATGGGTTCGGAGC
CAATGGATATCAACGAGGATGAGGCCGATGCACCGGATGATGATCTGCCC
ATGTTGAATCTGGCCTCGTTTGCCATCTACAAGCTGTTCGCGGAGTGGGA
ACGGGAGGGCTATGTCGTGCCCGAGATGCACCCTTCGGCCAATGCTGCCC
AACAGGCGGGAGGGGATGCCGGAACTCCAGTTCCCCCCGTGCCGAAGGAG
CCAAAGAAGCCGCCAGTGCGCACCGAGCTACCCTCTGGCTGGGAGACCAT
GCACCCGGCGACCATTCTTTGCATTATGCGTCCGGGACTCAACTACGTGG
ACTACGGGTCATCTGGCGACAAGACCAACGGCATGCAGCATCTGGGAATC
ATGGTGGACAACCAGGAGTTCCACGCCAACGGCAGATCAAAGAAAATCGC
CCGTCGCAACGTGGCCGTGAAAGTGTGCAACTCTCTGTTCGGCACCAACT
TCACCTACAGCGACACCACTTAAGACACCAACTCCAACCGCAGACTCCAA
CTGCCGACGACAACACACATAACGGACACTCTTAACGGACAGCAATCAGA
AGATTGCGACCCTGACGTCAATTGCGCAACTTTAAGCGACACCACTTAAG
ACACCAACTCCAACCGCAGACTCCAACTGCAGACGACAACACACCTATGC
CTCTCTTAACGGACAGCAATCAGAAGATTGCGACCCTGACGTCAATGGCG
CAACTTTAAGCGACACCACTTAAGACACCAACTCCAACCGCAGACTCCAA
CTGCAGACGACAACACACCTATGCCTCTCTTAACGGACAGCAATCGGAAG
ATTGCGACCCTGACGTCAATTGCGCAACTTTAAGCGACACCACTTAAGAC
ACCAACTCCAACCGCAGACTCCAACTGCCGACGACAACACACCTATGCCT
CTCTTAACGGACAGCAATCAGAAGATTGCGACCCTGACGTCAATGGCGCA
ACTTTAAGCGACACCACTTAAGACACCAACTCCAACCGCAGACTCCAACT
GCCGACGACAACACACCTATGCCTCTCTTAACGGACAGCAATCGGAAGAT
TGCGACCCTGACGTCAATGGCGCAACTTTAAGCGACACCACTTAAGACAC
CAACTCCAACCGCAGACTCCAACTGCCGACGACAACACACCTATGCCTCT
CTTAACGGACAGCAATCGGAAGATTGCGACCCTGACGTCAATGGCGCAAC
TTTAAGCGACACCACTTAAGACACCAACTCCAACCGCAGACTCCAACTGC
CGACGACAACACACCTATGCCTCTCTTAACGGACAGCAATCAGAAGATTG
CGACCCTGACGTCAATGGCGCAACTTTAAGAATTCCTTTTCTGTCAAAGT
GAAGAGGCATATTAAACAAGAATTAAAAAAAAAAAAAAAAA

LD08867.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
klett.l 3178 klett.l 27..2250 1..2224 11120 100 Plus
klett-RD 2250 klett-RD 27..2250 1..2224 11120 100 Plus
klett-RJ 2148 klett-RJ 1..1369 4..1372 6830 99.9 Plus
klett-RJ 2148 klett-RJ 1363..2144 1443..2224 3910 100 Plus
klett-RJ 2148 klett-RJ 1423..2100 1379..2056 3270 98.8 Plus
klett-RJ 2148 klett-RJ 1306..1365 1807..1866 300 100 Plus
klett-RJ 2148 klett-RJ 1306..1365 1931..1990 300 100 Plus
klett-RJ 2148 klett-RJ 1306..1365 2055..2114 300 100 Plus
klett-RJ 2148 klett-RJ 1727..1786 1309..1368 300 100 Plus
klett-RJ 2148 klett-RJ 1603..1662 1309..1368 300 100 Plus
klett-RJ 2148 klett-RJ 1306..1365 1683..1742 300 100 Plus
klett-RJ 2148 klett-RJ 1975..2034 1309..1368 300 100 Plus
klett-RJ 2148 klett-RJ 1851..1910 1309..1368 300 100 Plus
klett-RJ 2148 klett-RJ 1479..1538 1309..1368 285 98.3 Plus
klett-RJ 2148 klett-RJ 1306..1365 1435..1494 285 98.3 Plus
klett-RJ 2148 klett-RJ 1306..1365 1559..1618 285 98.3 Plus
klett-RJ 2148 klett-RJ 1363..1414 1317..1368 245 98 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21490312..21491410 2224..1126 5495 100 Minus
chrX 22417052 chrX 21490356..21491101 2056..1309 3480 98 Minus
chrX 22417052 chrX 21490480..21491227 2180..1435 3480 98 Minus
chrX 22417052 chrX 21491471..21492049 1125..547 2895 100 Minus
chrX 22417052 chrX 21490356..21490977 1932..1309 2890 97.9 Minus
chrX 22417052 chrX 21490604..21491227 2180..1559 2890 97.9 Minus
chrX 22417052 chrX 21490356..21490853 1808..1309 2300 97.8 Minus
chrX 22417052 chrX 21490728..21491227 2180..1683 2300 97.8 Minus
chrX 22417052 chrX 21493519..21493912 547..154 1970 100 Minus
chrX 22417052 chrX 21490356..21490729 1684..1309 1650 96.5 Minus
chrX 22417052 chrX 21490852..21491227 2180..1807 1650 96.5 Minus
chrX 22417052 chrX 21490356..21490605 1560..1309 1090 96.4 Minus
chrX 22417052 chrX 21490976..21491227 2180..1931 1090 96.4 Minus
chrX 22417052 chrX 21495132..21495284 153..1 765 100 Minus
chrX 22417052 chrX 21490356..21490481 1436..1309 500 94.5 Minus
chrX 22417052 chrX 21491100..21491227 2180..2055 500 94.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21625154..21626252 2224..1126 5495 100 Minus
X 23542271 X 21625198..21625943 2056..1309 3480 98 Minus
X 23542271 X 21625322..21626069 2180..1435 3480 98 Minus
X 23542271 X 21626313..21626891 1125..547 2895 100 Minus
X 23542271 X 21625198..21625819 1932..1309 2890 97.9 Minus
X 23542271 X 21625446..21626069 2180..1559 2890 97.9 Minus
X 23542271 X 21625198..21625695 1808..1309 2300 97.8 Minus
X 23542271 X 21625570..21626069 2180..1683 2300 97.8 Minus
X 23542271 X 21628361..21628754 547..154 1970 100 Minus
X 23542271 X 21625198..21625571 1684..1309 1650 96.5 Minus
X 23542271 X 21625694..21626069 2180..1807 1650 96.5 Minus
X 23542271 X 21625198..21625447 1560..1309 1090 96.4 Minus
X 23542271 X 21625818..21626069 2180..1931 1090 96.4 Minus
X 23542271 X 21629974..21630126 153..1 765 100 Minus
X 23542271 X 21625198..21625323 1436..1309 500 94.5 Minus
X 23542271 X 21625942..21626069 2180..2055 500 94.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21610246..21611344 2224..1126 5495 100 Minus
X 23527363 X 21611405..21611983 1125..547 2895 100 Minus
X 23527363 X 21613453..21613846 547..154 1970 100 Minus
X 23527363 X 21615066..21615218 153..1 765 100 Minus
X 23527363 X 21603057..21603098 1234..1193 165 92.8 Minus
Blast to na_te.dros performed on 2019-03-16 18:12:52 has no hits.

LD08867.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:13:41 Download gff for LD08867.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21490312..21491410 1126..2224 100 <- Minus
chrX 21491471..21492048 548..1125 100 <- Minus
chrX 21493519..21493912 154..547 100 <- Minus
chrX 21495132..21495284 1..153 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:13:41 Download gff for LD08867.complete
Subject Subject Range Query Range Percent Splice Strand
DIP1-RD 1..1233 91..1323 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:57:52 Download gff for LD08867.complete
Subject Subject Range Query Range Percent Splice Strand
DIP1-RD 1..1233 91..1323 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:17:08 Download gff for LD08867.complete
Subject Subject Range Query Range Percent Splice Strand
DIP1-RD 1..1233 91..1323 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:33:52 Download gff for LD08867.complete
Subject Subject Range Query Range Percent Splice Strand
DIP1-RD 1..1233 91..1323 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-11 14:58:58 Download gff for LD08867.complete
Subject Subject Range Query Range Percent Splice Strand
DIP1-RD 33..2256 1..2224 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:57:52 Download gff for LD08867.complete
Subject Subject Range Query Range Percent Splice Strand
DIP1-RD 33..2256 1..2224 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:17:08 Download gff for LD08867.complete
Subject Subject Range Query Range Percent Splice Strand
DIP1-RD 33..2256 1..2224 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:33:52 Download gff for LD08867.complete
Subject Subject Range Query Range Percent Splice Strand
DIP1-RD 23..2246 1..2224 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:13:41 Download gff for LD08867.complete
Subject Subject Range Query Range Percent Splice Strand
X 21625154..21626252 1126..2224 100 <- Minus
X 21626313..21626890 548..1125 100 <- Minus
X 21628361..21628754 154..547 100 <- Minus
X 21629974..21630126 1..153 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:13:41 Download gff for LD08867.complete
Subject Subject Range Query Range Percent Splice Strand
X 21625154..21626252 1126..2224 100 <- Minus
X 21626313..21626890 548..1125 100 <- Minus
X 21628361..21628754 154..547 100 <- Minus
X 21629974..21630126 1..153 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:13:41 Download gff for LD08867.complete
Subject Subject Range Query Range Percent Splice Strand
X 21625154..21626252 1126..2224 100 <- Minus
X 21626313..21626890 548..1125 100 <- Minus
X 21628361..21628754 154..547 100 <- Minus
X 21629974..21630126 1..153 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:17:08 Download gff for LD08867.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21501001..21501153 1..153 100   Minus
arm_X 21499388..21499781 154..547 100 <- Minus
arm_X 21496181..21497279 1126..2224 100 <- Minus
arm_X 21497340..21497917 548..1125 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:49:28 Download gff for LD08867.complete
Subject Subject Range Query Range Percent Splice Strand
X 21610246..21611344 1126..2224 100 <- Minus
X 21611405..21611982 548..1125 100 <- Minus
X 21613453..21613846 154..547 100 <- Minus
X 21615066..21615218 1..153 100   Minus

LD08867.pep Sequence

Translation from 90 to 1322

> LD08867.pep
MKRNRRAFAGNNKPFVFGGIYNPNATVKPLIQMPLQAANVQEQQSSPVAL
YPTSASPVAVQSPQDAFLAVQSPGAPAPVQLANSSDQQNNPDADAIASKL
PMPVIIKEEPISVNDEPSVDNIEDNTSASTSASGIGGKIPFKKIFQKRKK
SSERTRDKKLRQNRQLRKSMLPKNALMALNEVKGVTISDFTIDSNTDGGF
TAVVTVNSNQYEGKGTSKMTAKNAACEKAWRDFIIAKMTPKPPRIHQVEM
GSEPMDINEDEADAPDDDLPMLNLASFAIYKLFAEWEREGYVVPEMHPSA
NAAQQAGGDAGTPVPPVPKEPKKPPVRTELPSGWETMHPATILCIMRPGL
NYVDYGSSGDKTNGMQHLGIMVDNQEFHANGRSKKIARRNVAVKVCNSLF
GTNFTYSDTT*

LD08867.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10760-PA 296 GF10760-PA 63..295 146..405 315 32.2 Plus
Dana\GF20931-PA 106 GF20931-PA 1..103 1..114 169 44.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17525-PA 395 GG17525-PA 1..395 1..410 1627 80.1 Plus
Dere\GG14132-PA 310 GG14132-PA 24..308 77..404 357 32.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17808-PA 279 GH17808-PA 6..277 136..406 1036 71.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
DIP1-PD 410 CG17686-PD 1..410 1..410 2135 100 Plus
DIP1-PC 395 CG17686-PC 1..395 1..410 2031 96.3 Plus
DIP1-PB 409 CG17686-PB 19..409 20..410 2022 99.5 Plus
DIP1-PI 378 CG17686-PI 1..378 33..410 1964 100 Plus
DIP1-PG 378 CG17686-PG 1..378 33..410 1964 100 Plus
DIP1-PE 378 CG17686-PE 1..378 33..410 1964 100 Plus
DIP1-PF 394 CG17686-PF 18..394 34..410 1959 100 Plus
DIP1-PH 309 CG17686-PH 1..309 102..410 1621 100 Plus
CG12493-PB 293 CG12493-PB 11..290 81..404 373 32.4 Plus
CG12493-PA 296 CG12493-PA 11..293 81..404 362 32.1 Plus
blanks-PA 324 CG10630-PA 55..321 108..404 353 31 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14602-PA 338 GI14602-PA 7..337 91..408 1106 66.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13431-PA 392 GL13431-PA 1..391 1..408 1197 60.4 Plus
Dper\GL27226-PA 244 GL27226-PA 1..241 170..405 611 52.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14612-PA 392 GA14612-PA 1..391 1..408 1201 60.7 Plus
Dpse\GA26778-PA 311 GA26778-PA 23..308 144..405 575 45.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13527-PA 400 GM13527-PA 1..399 1..409 1820 87.3 Plus
Dsec\GM13531-PA 392 GM13531-PA 1..391 1..409 1786 86.3 Plus
Dsec\GM19639-PA 396 GM19639-PA 1..395 1..409 1771 85.6 Plus
Dsec\GM19640-PA 396 GM19640-PA 1..395 1..409 1770 85.6 Plus
Dsec\GM19637-PA 364 GM19637-PA 1..363 33..409 1699 86.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24670-PA 400 GD24670-PA 1..399 1..409 1863 89.2 Plus
Dsim\GD15489-PA 380 GD15489-PA 1..379 1..409 1552 77.3 Plus
Dsim\GD24430-PA 110 GD24430-PA 7..110 307..410 492 85.6 Plus
Dsim\GD15488-PA 130 GD15488-PA 1..111 1..114 409 73.7 Plus
Dsim\GD13198-PA 257 GD13198-PA 29..254 154..404 356 35.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19010-PA 375 GJ19010-PA 1..374 1..408 1017 56.8 Plus
Dvir\GJ10989-PA 199 GJ10989-PA 1..199 170..406 419 40 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25242-PA 412 GK25242-PA 1..407 1..404 1144 57.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15285-PA 392 GE15285-PA 19..391 20..409 1629 80.3 Plus
Dyak\GE20559-PA 404 GE20559-PA 99..402 68..405 387 33.6 Plus

LD08867.hyp Sequence

Translation from 90 to 1322

> LD08867.hyp
MKRNRRAFAGNNKPFVFGGIYNPNATVKPLIQMPLQAANVQEQQSSPVAL
YPTSASPVAVQSPQDAFLAVQSPGAPAPVQLANSSDQQNNPDADAIASKL
PMPVIIKEEPISVNDEPSVDNIEDNTSASTSASGIGGKIPFKKIFQKRKK
SSERTRDKKLRQNRQLRKSMLPKNALMALNEVKGVTISDFTIDSNTDGGF
TAVVTVNSNQYEGKGTSKMTAKNAACEKAWRDFIIAKMTPKPPRIHQVEM
GSEPMDINEDEADAPDDDLPMLNLASFAIYKLFAEWEREGYVVPEMHPSA
NAAQQAGGDAGTPVPPVPKEPKKPPVRTELPSGWETMHPATILCIMRPGL
NYVDYGSSGDKTNGMQHLGIMVDNQEFHANGRSKKIARRNVAVKVCNSLF
GTNFTYSDTT*

LD08867.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
DIP1-PD 410 CG17686-PD 1..410 1..410 2135 100 Plus
DIP1-PC 395 CG17686-PC 1..395 1..410 2031 96.3 Plus
DIP1-PB 409 CG17686-PB 19..409 20..410 2022 99.5 Plus
DIP1-PI 378 CG17686-PI 1..378 33..410 1964 100 Plus
DIP1-PG 378 CG17686-PG 1..378 33..410 1964 100 Plus