Clone LD08952 Report

Search the DGRC for LD08952

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:89
Well:52
Vector:pBS SK-
Associated Gene/TranscriptmTerf5-RA
Protein status:LD08952.pep: gold
Preliminary Size:1890
Sequenced Size:1823

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7175 2001-01-01 Release 2 assignment
CG7175 2001-10-10 Blastp of sequenced clone
CG7175 2008-04-29 Release 5.5 accounting
CG7175 2008-08-15 Release 5.9 accounting
CG7175 2008-12-18 5.12 accounting

Clone Sequence Records

LD08952.complete Sequence

1823 bp (1823 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061101

> LD08952.complete
ATAACAGTTACGTTTCTTTGCCGTTTGTAAATAAATCTGCGGGAAATGTT
ATAATTATGCTGCGCAACGGCCAGAATCAAGCGCAATTGCTGGCCCGGAG
CCTTGGACAGCTGGCGCGGGGAATGGCCAGTTCGAAACGGGTCAGCAGTA
AGAAGGAGGATCTCAAGCCAAAACTGCCAAAGCCACCGACAGTCGAGATT
CCGATGGAAGAGCCGCTGAATGCCAGCTATTTGTCCAAAACTCTGGGTAG
TTCCTATCGTTCTTGGGCGGCAGCCTTAGAGAAGCACCCAGAGCTCAAGA
CGTTAAAGCGCAAGGACTTGCTAAGCTCCTACGACACTTTGAAATCACTG
GACTATAGTGTGGACGACATCATAGCGAAACCCATGATCATCTATTATGG
CGCCACCACTTTGGCCAATCGCCACAGTGTCTTGCAGGAGTGCGGCTTCC
ACAACGTGACTGTCCAAACGCTGGCCAAGTATGTGACGGTGGTCAACAAG
CCGATAGAAGTCTTGAAGGCACATAATTACATCCCCTTCGATGTGAAGGT
GGCGGAGCGTCTGGCGGGATATTTTAAGGATATCAAGCTGCCGGTGGATT
TACGGGAGCTGGAGAGTGAGACCCTCACACTGAAGAGCTTGAGACAATCC
CTGATCAACGCTTACCTGCGTGAACGTCTCCAGATGGACGACAACGATCT
ACAGAAGCTGTGGCGCGTTTACACGCGCATCCGCCACAAGAGTTTTCGAG
CAGTGCAGGACACCATTGAACTGCTGACCAAAGAGTTTAATTTTTCCGCC
GAGCGGCTAAGGAAGAACAGTTTTCTGCTCTATTCGGAAGCAGATAACGT
GCGGCGCATCCTGCGAGAGGTGCCTACCATTGACTCGCAGGACATACGAG
AAATCGGCTTTCGCAGACCCAAGATTTTGATGTCCACCTGCGATAGCTTG
AAGCAAACACTGCAGCACGTCCACGCTTTCGGCATCAGTGAGGATGCCGT
TCTCCGCTGCCTGGAAGTGCTCACCCTTGGACCGGATACGGTTCTGGAGC
GACTAAGGGATCTGCAGGAGATCGAGGAGTTTCAAGTCTTGGGTACCAAT
CCGCGAATCCTGAGACTGGTCCACTACCAGAACAAGGCGCGACTGCGTCT
GGATTATCTCAATCAACTGCGGGTTCGGTGCGCCTCCTTGCACATCCTTT
CTTGTGGGTCCGAGGCGTTCGCTAAATTTGCCAGAGATGGCTCAGATCGT
ACTAAAGGCCGCGATATAGTCGTCTACTTGAGTAATGTTTTGGGGAAGGA
CGTGCAAGTGCTGCGCAATCTTCTCTCTCGCCATCCCAACTGGTGCCATA
TACCATTGCTGCACGTGAAGCAGTGTCTGGAGTACTTACGCAGCAAAAAG
TTTAAACTTAATGAGATATTTGCGAACATACACTTGCTGCTTTATCCCAT
CAAACGTATTGAAGAAAAAATGCTCCTTTTGCAATCACCCGATGCGCAAG
AAGATCTGCAGTTGCCAGTGGCGAATTTCGATTCGTTAAGCAACAACGAA
ATTCTGACTCTCATTCTCTACCTAATCGAATCGGAGTTCCACTTCACGGG
CGACGGCATCTGGACGGAGCAGCATACACATCACGTGGAGAACTTCAACA
ATCTACTGCCCGACTTTCCGGAAAGTCTCAATAAGGTCTACAAGTACGGC
GTAAAGCCTGCAGAGAAAATGATTATGGAGCGCTTGTAGGTGCCTCCAAT
ATAATTGTAAATAGCTTGTTATTAGAATTGGAAACTATACTGAAACCCAA
CTTAAAAAAAAAAAAAAAAAAAA

LD08952.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7175-RA 2034 CG7175-RA 196..1999 1..1804 9020 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14046504..14047483 1225..246 4900 100 Minus
chr2RHet 3288813 chr2RHet 2317169..2318275 1307..180 4450 93.5 Minus
chr2RHet 3288813 chr2RHet 2316770..2317172 1797..1393 1810 97 Minus
chr3R 27901430 chr3R 14045816..14046168 1803..1451 1765 100 Minus
chr3R 27901430 chr3R 14047532..14047780 249..1 1245 100 Minus
chr3R 27901430 chr3R 14046228..14046452 1450..1226 1125 100 Minus
chr2RHet 3288813 chr2RHet 2318280..2318364 86..2 425 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 18:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
CR41501-RB 951 CR41501-RB 571..942 936..1307 1620 95.6 Plus
CR41501-RB 951 CR41501-RB 4..270 201..467 1245 97.7 Plus
CR41501-RA 912 CR41501-RA 4..270 201..467 1245 97.7 Plus
CR41501-RA 912 CR41501-RA 530..761 946..1177 965 94.3 Plus
CR41501-RB 951 CR41501-RB 271..457 579..765 845 96.7 Plus
CR41501-RA 912 CR41501-RA 271..457 579..765 845 96.7 Plus
CR41501-RA 912 CR41501-RA 761..912 1586..1739 655 96.1 Plus
CR41501-RB 951 CR41501-RB 454..546 777..869 405 95.6 Plus
CR41501-RA 912 CR41501-RA 454..530 777..853 340 96.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18222210..18223189 1225..246 4900 100 Minus
2R 25286936 2R 3524935..3526041 1307..180 4450 93.5 Minus
2R 25286936 2R 3524536..3524938 1797..1393 1810 97 Minus
3R 32079331 3R 18221521..18221874 1804..1451 1770 100 Minus
3R 32079331 3R 18223238..18223486 249..1 1245 100 Minus
3R 32079331 3R 18221934..18222158 1450..1226 1125 100 Minus
2R 25286936 2R 3526046..3526130 86..2 425 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17963041..17964020 1225..246 4900 100 Minus
2R 25260384 2R 3525735..3526137 1797..1393 1820 97 Minus
3R 31820162 3R 17962352..17962705 1804..1451 1770 100 Minus
2R 25260384 2R 3526134..3526505 1307..936 1620 95.6 Minus
2R 25260384 2R 3526666..3526960 765..471 1325 96.6 Minus
2R 25260384 2R 3526953..3527240 467..180 1320 97.2 Minus
3R 31820162 3R 17964069..17964317 249..1 1245 100 Minus
3R 31820162 3R 17962765..17962989 1450..1226 1125 100 Minus
2R 25260384 2R 3526515..3526669 931..777 670 95.4 Minus
2R 25260384 2R 3527245..3527329 86..2 425 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:14:52 has no hits.

LD08952.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:15:43 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14046228..14046452 1226..1450 100 <- Minus
chr3R 14045816..14046168 1451..1803 100 <- Minus
chr3R 14046504..14047482 247..1225 100 <- Minus
chr3R 14047535..14047780 1..246 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:41:51 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7175-RA 1..1683 57..1739 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:40 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7175-RA 1..1683 57..1739 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:12:36 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 1..1683 57..1739 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:40 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7175-RA 1..1683 57..1739 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:39 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 1..1683 57..1739 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:18 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:25 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7175-RA 196..1998 1..1803 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:40 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7175-RA 196..1998 1..1803 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:12:36 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 197..1999 1..1803 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:41 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7175-RA 196..1998 1..1803 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:39 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 197..1999 1..1803 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:43 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18221522..18221874 1451..1803 100 <- Minus
3R 18221934..18222158 1226..1450 100 <- Minus
3R 18222210..18223188 247..1225 100 <- Minus
3R 18223241..18223486 1..246 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:43 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18221522..18221874 1451..1803 100 <- Minus
3R 18221934..18222158 1226..1450 100 <- Minus
3R 18222210..18223188 247..1225 100 <- Minus
3R 18223241..18223486 1..246 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:43 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18221522..18221874 1451..1803 100 <- Minus
3R 18221934..18222158 1226..1450 100 <- Minus
3R 18222210..18223188 247..1225 100 <- Minus
3R 18223241..18223486 1..246 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:12:36 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14047244..14047596 1451..1803 100 <- Minus
arm_3R 14047656..14047880 1226..1450 100 <- Minus
arm_3R 14047932..14048910 247..1225 100 <- Minus
arm_3R 14048963..14049208 1..246 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:45:48 Download gff for LD08952.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17962353..17962705 1451..1803 100 <- Minus
3R 17962765..17962989 1226..1450 100 <- Minus
3R 17963041..17964019 247..1225 100 <- Minus
3R 17964072..17964317 1..246 100   Minus

LD08952.hyp Sequence

Translation from 2 to 1738

> LD08952.hyp
NSYVSLPFVNKSAGNVIIMLRNGQNQAQLLARSLGQLARGMASSKRVSSK
KEDLKPKLPKPPTVEIPMEEPLNASYLSKTLGSSYRSWAAALEKHPELKT
LKRKDLLSSYDTLKSLDYSVDDIIAKPMIIYYGATTLANRHSVLQECGFH
NVTVQTLAKYVTVVNKPIEVLKAHNYIPFDVKVAERLAGYFKDIKLPVDL
RELESETLTLKSLRQSLINAYLRERLQMDDNDLQKLWRVYTRIRHKSFRA
VQDTIELLTKEFNFSAERLRKNSFLLYSEADNVRRILREVPTIDSQDIRE
IGFRRPKILMSTCDSLKQTLQHVHAFGISEDAVLRCLEVLTLGPDTVLER
LRDLQEIEEFQVLGTNPRILRLVHYQNKARLRLDYLNQLRVRCASLHILS
CGSEAFAKFARDGSDRTKGRDIVVYLSNVLGKDVQVLRNLLSRHPNWCHI
PLLHVKQCLEYLRSKKFKLNEIFANIHLLLYPIKRIEEKMLLLQSPDAQE
DLQLPVANFDSLSNNEILTLILYLIESEFHFTGDGIWTEQHTHHVENFNN
LLPDFPESLNKVYKYGVKPAEKMIMERL*

LD08952.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf5-PA 560 CG7175-PA 1..560 19..578 2865 100 Plus

LD08952.pep Sequence

Translation from 56 to 1738

> LD08952.pep
MLRNGQNQAQLLARSLGQLARGMASSKRVSSKKEDLKPKLPKPPTVEIPM
EEPLNASYLSKTLGSSYRSWAAALEKHPELKTLKRKDLLSSYDTLKSLDY
SVDDIIAKPMIIYYGATTLANRHSVLQECGFHNVTVQTLAKYVTVVNKPI
EVLKAHNYIPFDVKVAERLAGYFKDIKLPVDLRELESETLTLKSLRQSLI
NAYLRERLQMDDNDLQKLWRVYTRIRHKSFRAVQDTIELLTKEFNFSAER
LRKNSFLLYSEADNVRRILREVPTIDSQDIREIGFRRPKILMSTCDSLKQ
TLQHVHAFGISEDAVLRCLEVLTLGPDTVLERLRDLQEIEEFQVLGTNPR
ILRLVHYQNKARLRLDYLNQLRVRCASLHILSCGSEAFAKFARDGSDRTK
GRDIVVYLSNVLGKDVQVLRNLLSRHPNWCHIPLLHVKQCLEYLRSKKFK
LNEIFANIHLLLYPIKRIEEKMLLLQSPDAQEDLQLPVANFDSLSNNEIL
TLILYLIESEFHFTGDGIWTEQHTHHVENFNNLLPDFPESLNKVYKYGVK
PAEKMIMERL*

LD08952.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23155-PA 559 GF23155-PA 1..559 1..560 2501 82.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16640-PA 560 GG16640-PA 1..560 1..560 2830 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19034-PA 555 GH19034-PA 2..555 1..560 2277 75.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf5-PA 560 CG7175-PA 1..560 1..560 2865 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22846-PA 559 GI22846-PA 1..554 1..555 2265 75.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12602-PA 558 GL12602-PA 1..558 1..560 2522 83.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20155-PA 558 GA20155-PA 1..558 1..560 2528 83.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15317-PA 560 GM15317-PA 1..560 1..560 2878 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20194-PA 469 GD20194-PA 1..469 1..469 2373 95.5 Plus
Dsim\GD20195-PA 89 GD20195-PA 1..89 472..560 457 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24705-PA 557 GJ24705-PA 1..557 1..560 2318 76.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22788-PA 535 GK22788-PA 3..531 24..558 2151 74.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25228-PA 560 GE25228-PA 1..560 1..560 2848 94.8 Plus