![]() | BDGP Sequence Production Resources |
Search the DGRC for LD08952
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 89 |
Well: | 52 |
Vector: | pBS SK- |
Associated Gene/Transcript | mTerf5-RA |
Protein status: | LD08952.pep: gold |
Preliminary Size: | 1890 |
Sequenced Size: | 1823 |
Gene | Date | Evidence |
---|---|---|
CG7175 | 2001-01-01 | Release 2 assignment |
CG7175 | 2001-10-10 | Blastp of sequenced clone |
CG7175 | 2008-04-29 | Release 5.5 accounting |
CG7175 | 2008-08-15 | Release 5.9 accounting |
CG7175 | 2008-12-18 | 5.12 accounting |
1823 bp (1823 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061101
> LD08952.complete ATAACAGTTACGTTTCTTTGCCGTTTGTAAATAAATCTGCGGGAAATGTT ATAATTATGCTGCGCAACGGCCAGAATCAAGCGCAATTGCTGGCCCGGAG CCTTGGACAGCTGGCGCGGGGAATGGCCAGTTCGAAACGGGTCAGCAGTA AGAAGGAGGATCTCAAGCCAAAACTGCCAAAGCCACCGACAGTCGAGATT CCGATGGAAGAGCCGCTGAATGCCAGCTATTTGTCCAAAACTCTGGGTAG TTCCTATCGTTCTTGGGCGGCAGCCTTAGAGAAGCACCCAGAGCTCAAGA CGTTAAAGCGCAAGGACTTGCTAAGCTCCTACGACACTTTGAAATCACTG GACTATAGTGTGGACGACATCATAGCGAAACCCATGATCATCTATTATGG CGCCACCACTTTGGCCAATCGCCACAGTGTCTTGCAGGAGTGCGGCTTCC ACAACGTGACTGTCCAAACGCTGGCCAAGTATGTGACGGTGGTCAACAAG CCGATAGAAGTCTTGAAGGCACATAATTACATCCCCTTCGATGTGAAGGT GGCGGAGCGTCTGGCGGGATATTTTAAGGATATCAAGCTGCCGGTGGATT TACGGGAGCTGGAGAGTGAGACCCTCACACTGAAGAGCTTGAGACAATCC CTGATCAACGCTTACCTGCGTGAACGTCTCCAGATGGACGACAACGATCT ACAGAAGCTGTGGCGCGTTTACACGCGCATCCGCCACAAGAGTTTTCGAG CAGTGCAGGACACCATTGAACTGCTGACCAAAGAGTTTAATTTTTCCGCC GAGCGGCTAAGGAAGAACAGTTTTCTGCTCTATTCGGAAGCAGATAACGT GCGGCGCATCCTGCGAGAGGTGCCTACCATTGACTCGCAGGACATACGAG AAATCGGCTTTCGCAGACCCAAGATTTTGATGTCCACCTGCGATAGCTTG AAGCAAACACTGCAGCACGTCCACGCTTTCGGCATCAGTGAGGATGCCGT TCTCCGCTGCCTGGAAGTGCTCACCCTTGGACCGGATACGGTTCTGGAGC GACTAAGGGATCTGCAGGAGATCGAGGAGTTTCAAGTCTTGGGTACCAAT CCGCGAATCCTGAGACTGGTCCACTACCAGAACAAGGCGCGACTGCGTCT GGATTATCTCAATCAACTGCGGGTTCGGTGCGCCTCCTTGCACATCCTTT CTTGTGGGTCCGAGGCGTTCGCTAAATTTGCCAGAGATGGCTCAGATCGT ACTAAAGGCCGCGATATAGTCGTCTACTTGAGTAATGTTTTGGGGAAGGA CGTGCAAGTGCTGCGCAATCTTCTCTCTCGCCATCCCAACTGGTGCCATA TACCATTGCTGCACGTGAAGCAGTGTCTGGAGTACTTACGCAGCAAAAAG TTTAAACTTAATGAGATATTTGCGAACATACACTTGCTGCTTTATCCCAT CAAACGTATTGAAGAAAAAATGCTCCTTTTGCAATCACCCGATGCGCAAG AAGATCTGCAGTTGCCAGTGGCGAATTTCGATTCGTTAAGCAACAACGAA ATTCTGACTCTCATTCTCTACCTAATCGAATCGGAGTTCCACTTCACGGG CGACGGCATCTGGACGGAGCAGCATACACATCACGTGGAGAACTTCAACA ATCTACTGCCCGACTTTCCGGAAAGTCTCAATAAGGTCTACAAGTACGGC GTAAAGCCTGCAGAGAAAATGATTATGGAGCGCTTGTAGGTGCCTCCAAT ATAATTGTAAATAGCTTGTTATTAGAATTGGAAACTATACTGAAACCCAA CTTAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7175-RA | 2034 | CG7175-RA | 196..1999 | 1..1804 | 9020 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 14046504..14047483 | 1225..246 | 4900 | 100 | Minus |
chr2RHet | 3288813 | chr2RHet | 2317169..2318275 | 1307..180 | 4450 | 93.5 | Minus |
chr2RHet | 3288813 | chr2RHet | 2316770..2317172 | 1797..1393 | 1810 | 97 | Minus |
chr3R | 27901430 | chr3R | 14045816..14046168 | 1803..1451 | 1765 | 100 | Minus |
chr3R | 27901430 | chr3R | 14047532..14047780 | 249..1 | 1245 | 100 | Minus |
chr3R | 27901430 | chr3R | 14046228..14046452 | 1450..1226 | 1125 | 100 | Minus |
chr2RHet | 3288813 | chr2RHet | 2318280..2318364 | 86..2 | 425 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CR41501-RB | 951 | CR41501-RB | 571..942 | 936..1307 | 1620 | 95.6 | Plus |
CR41501-RB | 951 | CR41501-RB | 4..270 | 201..467 | 1245 | 97.7 | Plus |
CR41501-RA | 912 | CR41501-RA | 4..270 | 201..467 | 1245 | 97.7 | Plus |
CR41501-RA | 912 | CR41501-RA | 530..761 | 946..1177 | 965 | 94.3 | Plus |
CR41501-RB | 951 | CR41501-RB | 271..457 | 579..765 | 845 | 96.7 | Plus |
CR41501-RA | 912 | CR41501-RA | 271..457 | 579..765 | 845 | 96.7 | Plus |
CR41501-RA | 912 | CR41501-RA | 761..912 | 1586..1739 | 655 | 96.1 | Plus |
CR41501-RB | 951 | CR41501-RB | 454..546 | 777..869 | 405 | 95.6 | Plus |
CR41501-RA | 912 | CR41501-RA | 454..530 | 777..853 | 340 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 18222210..18223189 | 1225..246 | 4900 | 100 | Minus |
2R | 25286936 | 2R | 3524935..3526041 | 1307..180 | 4450 | 93.5 | Minus |
2R | 25286936 | 2R | 3524536..3524938 | 1797..1393 | 1810 | 97 | Minus |
3R | 32079331 | 3R | 18221521..18221874 | 1804..1451 | 1770 | 100 | Minus |
3R | 32079331 | 3R | 18223238..18223486 | 249..1 | 1245 | 100 | Minus |
3R | 32079331 | 3R | 18221934..18222158 | 1450..1226 | 1125 | 100 | Minus |
2R | 25286936 | 2R | 3526046..3526130 | 86..2 | 425 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 17963041..17964020 | 1225..246 | 4900 | 100 | Minus |
2R | 25260384 | 2R | 3525735..3526137 | 1797..1393 | 1820 | 97 | Minus |
3R | 31820162 | 3R | 17962352..17962705 | 1804..1451 | 1770 | 100 | Minus |
2R | 25260384 | 2R | 3526134..3526505 | 1307..936 | 1620 | 95.6 | Minus |
2R | 25260384 | 2R | 3526666..3526960 | 765..471 | 1325 | 96.6 | Minus |
2R | 25260384 | 2R | 3526953..3527240 | 467..180 | 1320 | 97.2 | Minus |
3R | 31820162 | 3R | 17964069..17964317 | 249..1 | 1245 | 100 | Minus |
3R | 31820162 | 3R | 17962765..17962989 | 1450..1226 | 1125 | 100 | Minus |
2R | 25260384 | 2R | 3526515..3526669 | 931..777 | 670 | 95.4 | Minus |
2R | 25260384 | 2R | 3527245..3527329 | 86..2 | 425 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 14046228..14046452 | 1226..1450 | 100 | <- | Minus |
chr3R | 14045816..14046168 | 1451..1803 | 100 | <- | Minus |
chr3R | 14046504..14047482 | 247..1225 | 100 | <- | Minus |
chr3R | 14047535..14047780 | 1..246 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7175-RA | 1..1683 | 57..1739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7175-RA | 1..1683 | 57..1739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mTerf5-RA | 1..1683 | 57..1739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7175-RA | 1..1683 | 57..1739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mTerf5-RA | 1..1683 | 57..1739 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7175-RA | 196..1998 | 1..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7175-RA | 196..1998 | 1..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mTerf5-RA | 197..1999 | 1..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7175-RA | 196..1998 | 1..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mTerf5-RA | 197..1999 | 1..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18221522..18221874 | 1451..1803 | 100 | <- | Minus |
3R | 18221934..18222158 | 1226..1450 | 100 | <- | Minus |
3R | 18222210..18223188 | 247..1225 | 100 | <- | Minus |
3R | 18223241..18223486 | 1..246 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18221522..18221874 | 1451..1803 | 100 | <- | Minus |
3R | 18221934..18222158 | 1226..1450 | 100 | <- | Minus |
3R | 18222210..18223188 | 247..1225 | 100 | <- | Minus |
3R | 18223241..18223486 | 1..246 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18221522..18221874 | 1451..1803 | 100 | <- | Minus |
3R | 18221934..18222158 | 1226..1450 | 100 | <- | Minus |
3R | 18222210..18223188 | 247..1225 | 100 | <- | Minus |
3R | 18223241..18223486 | 1..246 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 14047244..14047596 | 1451..1803 | 100 | <- | Minus |
arm_3R | 14047656..14047880 | 1226..1450 | 100 | <- | Minus |
arm_3R | 14047932..14048910 | 247..1225 | 100 | <- | Minus |
arm_3R | 14048963..14049208 | 1..246 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17962353..17962705 | 1451..1803 | 100 | <- | Minus |
3R | 17962765..17962989 | 1226..1450 | 100 | <- | Minus |
3R | 17963041..17964019 | 247..1225 | 100 | <- | Minus |
3R | 17964072..17964317 | 1..246 | 100 | Minus |
Translation from 2 to 1738
> LD08952.hyp NSYVSLPFVNKSAGNVIIMLRNGQNQAQLLARSLGQLARGMASSKRVSSK KEDLKPKLPKPPTVEIPMEEPLNASYLSKTLGSSYRSWAAALEKHPELKT LKRKDLLSSYDTLKSLDYSVDDIIAKPMIIYYGATTLANRHSVLQECGFH NVTVQTLAKYVTVVNKPIEVLKAHNYIPFDVKVAERLAGYFKDIKLPVDL RELESETLTLKSLRQSLINAYLRERLQMDDNDLQKLWRVYTRIRHKSFRA VQDTIELLTKEFNFSAERLRKNSFLLYSEADNVRRILREVPTIDSQDIRE IGFRRPKILMSTCDSLKQTLQHVHAFGISEDAVLRCLEVLTLGPDTVLER LRDLQEIEEFQVLGTNPRILRLVHYQNKARLRLDYLNQLRVRCASLHILS CGSEAFAKFARDGSDRTKGRDIVVYLSNVLGKDVQVLRNLLSRHPNWCHI PLLHVKQCLEYLRSKKFKLNEIFANIHLLLYPIKRIEEKMLLLQSPDAQE DLQLPVANFDSLSNNEILTLILYLIESEFHFTGDGIWTEQHTHHVENFNN LLPDFPESLNKVYKYGVKPAEKMIMERL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mTerf5-PA | 560 | CG7175-PA | 1..560 | 19..578 | 2865 | 100 | Plus |
Translation from 56 to 1738
> LD08952.pep MLRNGQNQAQLLARSLGQLARGMASSKRVSSKKEDLKPKLPKPPTVEIPM EEPLNASYLSKTLGSSYRSWAAALEKHPELKTLKRKDLLSSYDTLKSLDY SVDDIIAKPMIIYYGATTLANRHSVLQECGFHNVTVQTLAKYVTVVNKPI EVLKAHNYIPFDVKVAERLAGYFKDIKLPVDLRELESETLTLKSLRQSLI NAYLRERLQMDDNDLQKLWRVYTRIRHKSFRAVQDTIELLTKEFNFSAER LRKNSFLLYSEADNVRRILREVPTIDSQDIREIGFRRPKILMSTCDSLKQ TLQHVHAFGISEDAVLRCLEVLTLGPDTVLERLRDLQEIEEFQVLGTNPR ILRLVHYQNKARLRLDYLNQLRVRCASLHILSCGSEAFAKFARDGSDRTK GRDIVVYLSNVLGKDVQVLRNLLSRHPNWCHIPLLHVKQCLEYLRSKKFK LNEIFANIHLLLYPIKRIEEKMLLLQSPDAQEDLQLPVANFDSLSNNEIL TLILYLIESEFHFTGDGIWTEQHTHHVENFNNLLPDFPESLNKVYKYGVK PAEKMIMERL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23155-PA | 559 | GF23155-PA | 1..559 | 1..560 | 2501 | 82.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16640-PA | 560 | GG16640-PA | 1..560 | 1..560 | 2830 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19034-PA | 555 | GH19034-PA | 2..555 | 1..560 | 2277 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mTerf5-PA | 560 | CG7175-PA | 1..560 | 1..560 | 2865 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22846-PA | 559 | GI22846-PA | 1..554 | 1..555 | 2265 | 75.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12602-PA | 558 | GL12602-PA | 1..558 | 1..560 | 2522 | 83.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20155-PA | 558 | GA20155-PA | 1..558 | 1..560 | 2528 | 83.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15317-PA | 560 | GM15317-PA | 1..560 | 1..560 | 2878 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20194-PA | 469 | GD20194-PA | 1..469 | 1..469 | 2373 | 95.5 | Plus |
Dsim\GD20195-PA | 89 | GD20195-PA | 1..89 | 472..560 | 457 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24705-PA | 557 | GJ24705-PA | 1..557 | 1..560 | 2318 | 76.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22788-PA | 535 | GK22788-PA | 3..531 | 24..558 | 2151 | 74.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25228-PA | 560 | GE25228-PA | 1..560 | 1..560 | 2848 | 94.8 | Plus |