Clone LD09025 Report

Search the DGRC for LD09025

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:90
Well:25
Vector:pBS SK-
Associated Gene/TranscripteIF-2gamma-RB
Protein status:LD09025.pep: gold
Preliminary Size:1838
Sequenced Size:1898

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6476 2001-01-01 Release 2 assignment
CG6476 2001-10-10 Blastp of sequenced clone
CG6476 2003-01-01 Sim4 clustering to Release 3
Su(var)3-9 2008-04-29 Release 5.5 accounting
Su(var)3-9 2008-08-15 Release 5.9 accounting
Su(var)3-9 2008-12-18 5.12 accounting

Clone Sequence Records

LD09025.complete Sequence

1898 bp (1898 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061102

> LD09025.complete
CCGAGCTGTAATAGCTGAAAATTATTATTTTCATTTTGCATACGCATCGT
TTTTGAAAACATCAGCAACATGGCCACGGCTGAAGCCCAGATCGGTGTGA
ACAGGAACTTGCAGAAGCAGGACCTCAGCAACTTGGACGTCTCTAAACTA
ACGCCTCTATCACCGGAGGTCATCTCCCGACAGGCGACCATCAACATCGG
CACCATCGGTCATGTGGCTCACGGCAAATCCACGGTGGTCAAAGCCATAT
CCGGCGTGCAGACTGTGCGCTTCAAGAACGAACTGGAGCGCAACATCACA
ATCAAGCTGGGTTATGCCAACGCCAAAATCTACAAGTGTGACAACCCCAA
GTGCCCGCGCCCGGCCAGCTTCGTATCGGATGCATCCAGCAAGGACGACA
GCTTGCCCTGCACTCGGCTCAACTGCTCCGGCAACTTCAGACTGGTGCGA
CATGTGAGCTTCGTGGATTGCCCCGGTCACGACATTCTTATGGCTACCAT
GTTGAACGGTGCTGCTGTGATGGACGCTGCTCTGCTGCTCATTGCTGGCA
ATGAATCCTGTCCACAACCGCAAACCTCTGAGCATTTGGCCGCCATTGAG
ATTATGAAGCTGAAACAGATTCTGATCTTGCAAAACAAGATCGATCTGAT
CAAGGAGAGCCAGGCGAAAGAGCAGTACGAGGAGATCACCAAATTCGTCC
AGGGCACCGTAGCTGAGGGCGCTCCGATCATTCCGATCTCGGCCCAGCTT
AAGTACAACATCGATGTGCTCTGCGAGTACATTGTGAACAAGATACCAGT
GCCGCCGCGTGACTTCAATGCCCCGCCCCGTCTGATCGTCATCCGATCCT
TCGACGTGAACAAGCCAGGCTGTGAGGTGGCAGACCTTAAGGGCGGTGTG
GCCGGTGGCTCCATTCTGAGCGGCGTGCTGAAGGTAGGCCAAGAGATCGA
GGTGCGTCCGGGCGTTGTGACCAAGGATAGCGATGGCAACATCACCTGCC
GTCCAATCTTCTCCCGTATCGTCTCGCTCTTCGCCGAACAGAATGAGCTG
CAGTACGCCGTGCCCGGCGGTCTGATTGGTGTGGGCACCAAGATCGATCC
TACGCTGTGCCGTGCCGATCGTTTGGTCGGTCAGGTGCTAGGCGCCGTTG
GCCAGCTGCCGGACATCTACCAGGAGCTGGAAATCTCGTATTACCTGCTG
CGTCGCCTTCTCGGCGTCCGTACCGATGGTGACAAGAAGGGAGCGCGCGT
TGAGAAGCTGCAGAAGAACGAAATCCTGTTGGTTAATATCGGATCCCTCA
GCACTGGTGGCCGCATCTCGGCCACCAAAGGTGATTTGGCCAAGATCGTT
CTTACGACGCCTGTGTGCACGGAGAAGGGCGAGAAGATTGCACTCAGCAG
ACGTGTGGAGAACCATTGGCGTTTGATTGGCTGGGGTCAGATCTTCGGAG
GCAAGACAATCACACCCGTTCTGGACAGCCAGGTGGCAAAGAAGTAGAAT
TTAGTTAGGATCCGAATGGTTCTACTTTTAAGAACAACATCAGCGGCAAA
AGTGGCAGCATCATCTTTATTAGGCCTCTTCACACTGCTCCTTCTTGTCC
CACAGCTCCATTCTTCCCGTGTCCGTTGATCAAACCGAAACTAATTAGTA
CCAACATGAAATACATACCTAACTTAATTTATTTTATTGAATTTTGTTGT
CGAGTATGTATATAATATGAAAACACACGATTCGCTTGCGAGTATTGTGC
ATCTATAGCAGAATCAGGCATTAAAAAAGCAACTAATAGGGTATACCTTT
ATATATTATAATAACTAAAGGCAAATCTGATACATCGTAAAATTGTTTTT
ATGATTTAAATACAAAACAAAAACTAAACGAAAAAAAAAAAAAAAAAA

LD09025.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)3-9-RB 2085 Su(var)3-9-RB 66..1960 1..1895 9460 99.9 Plus
Su(var)3-9-RC 2095 Su(var)3-9-RC 210..1970 135..1895 8790 99.9 Plus
Su(var)3-9-RA 2405 Su(var)3-9-RA 59..368 1..310 1550 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11083140..11084018 1421..543 4380 99.9 Minus
chr3R 27901430 chr3R 11082614..11083073 1880..1421 2300 100 Minus
chr3R 27901430 chr3R 11084079..11084317 548..310 1195 100 Minus
chr3R 27901430 chr3R 11087175..11087352 312..135 890 100 Minus
chr3R 27901430 chr3R 11087911..11088046 136..1 680 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15258510..15259388 1421..543 4380 99.9 Minus
3R 32079331 3R 15257969..15258443 1895..1421 2360 99.8 Minus
3R 32079331 3R 15259449..15259687 548..310 1195 100 Minus
3R 32079331 3R 15262545..15262722 312..135 890 100 Minus
3R 32079331 3R 15263281..15263416 136..1 680 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14999341..15000219 1421..543 4380 99.8 Minus
3R 31820162 3R 14998800..14999274 1895..1421 2360 99.7 Minus
3R 31820162 3R 15000280..15000518 548..310 1195 100 Minus
3R 31820162 3R 15003376..15003553 312..135 890 100 Minus
3R 31820162 3R 15004112..15004247 136..1 680 100 Minus
Blast to na_te.dros performed 2019-03-15 15:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
S2 1735 S2 S2 1735bp 1428..1480 1839..1782 117 70.7 Minus
transib1 2167 transib1 TRANSIB1 2167bp 1879..1947 1655..1722 117 65.2 Plus

LD09025.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:48:55 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11082614..11083072 1422..1880 100 <- Minus
chr3R 11083140..11084013 548..1421 100 <- Minus
chr3R 11084080..11084316 311..547 100 <- Minus
chr3R 11087177..11087351 136..310 100 <- Minus
chr3R 11087912..11088046 1..135 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:41:57 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RB 1..1428 70..1497 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:41 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RB 1..1428 70..1497 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:41:28 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 1..1428 70..1497 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:42 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RB 1..1428 70..1497 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:16:47 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 1..1428 70..1497 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:27 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RB 59..1938 1..1880 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:41 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RB 59..1938 1..1880 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:28 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 43..1922 1..1880 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:44 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RB 59..1938 1..1880 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:16:47 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 43..1922 1..1880 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:55 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15257984..15258442 1422..1880 100 <- Minus
3R 15258510..15259383 548..1421 100 <- Minus
3R 15259450..15259686 311..547 100 <- Minus
3R 15262547..15262721 136..310 100 <- Minus
3R 15263282..15263416 1..135 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:55 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15257984..15258442 1422..1880 100 <- Minus
3R 15258510..15259383 548..1421 100 <- Minus
3R 15259450..15259686 311..547 100 <- Minus
3R 15262547..15262721 136..310 100 <- Minus
3R 15263282..15263416 1..135 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:55 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15257984..15258442 1422..1880 100 <- Minus
3R 15258510..15259383 548..1421 100 <- Minus
3R 15259450..15259686 311..547 100 <- Minus
3R 15262547..15262721 136..310 100 <- Minus
3R 15263282..15263416 1..135 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:28 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11085172..11085408 311..547 100 <- Minus
arm_3R 11088269..11088443 136..310 100 <- Minus
arm_3R 11089004..11089138 1..135 100   Minus
arm_3R 11083706..11084164 1422..1880 100 <- Minus
arm_3R 11084232..11085105 548..1421 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:45:49 Download gff for LD09025.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14998815..14999273 1422..1880 100 <- Minus
3R 14999341..15000214 548..1421 100 <- Minus
3R 15000281..15000517 311..547 100 <- Minus
3R 15003378..15003552 136..310 100 <- Minus
3R 15004113..15004247 1..135 100   Minus

LD09025.pep Sequence

Translation from 69 to 1496

> LD09025.pep
MATAEAQIGVNRNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVA
HGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPAS
FVSDASSKDDSLPCTRLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAV
MDAALLLIAGNESCPQPQTSEHLAAIEIMKLKQILILQNKIDLIKESQAK
EQYEEITKFVQGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFN
APPRLIVIRSFDVNKPGCEVADLKGGVAGGSILSGVLKVGQEIEVRPGVV
TKDSDGNITCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIDPTLCRAD
RLVGQVLGAVGQLPDIYQELEISYYLLRRLLGVRTDGDKKGARVEKLQKN
EILLVNIGSLSTGGRISATKGDLAKIVLTTPVCTEKGEKIALSRRVENHW
RLIGWGQIFGGKTITPVLDSQVAKK*

LD09025.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11769-PA 1020 GF11769-PA 617..1020 72..475 2061 96.3 Plus
Dana\GF11769-PA 1020 GF11769-PA 1..80 1..80 384 95 Plus
Dana\GF13674-PA 456 GF13674-PA 59..365 42..384 208 28.1 Plus
Dana\GF12096-PA 440 GF12096-PA 5..226 41..295 199 27.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\eIF2gamma-PA 475 GG20759-PA 1..475 1..475 2495 99.8 Plus
Dere\GG20777-PA 512 GG20777-PA 5..230 41..295 195 28.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18750-PA 1035 GH18750-PA 642..1035 82..475 2014 96.2 Plus
Dgri\GH18750-PA 1035 GH18750-PA 1..80 1..80 360 90 Plus
Dgri\GH21181-PA 525 GH21181-PA 2..236 37..295 188 26.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2gamma-PD 475 CG43665-PD 1..475 1..475 2416 100 Plus
eIF2gamma-PB 475 CG43665-PB 1..475 1..475 2416 100 Plus
eIF2gamma-PC 467 CG43665-PC 15..467 23..475 2310 100 Plus
Su(var)3-9-PA 635 CG43664-PA 1..89 1..89 390 92.1 Plus
eEFSec-PA 511 CG9841-PA 6..230 42..295 201 27.8 Plus
mEFTu2-PA 456 CG12736-PA 59..365 42..384 198 26.9 Plus
mEFTu1-PB 489 CG6050-PB 84..315 42..294 186 26.4 Plus
mEFTu1-PA 489 CG6050-PA 84..315 42..294 186 26.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24667-PA 1017 GI24667-PA 618..1017 76..475 2030 95.2 Plus
Dmoj\GI24667-PA 1017 GI24667-PA 1..80 1..80 374 92.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12073-PA 1004 GL12073-PA 622..991 82..451 1934 98.9 Plus
Dper\GL12073-PA 1004 GL12073-PA 1..80 1..80 377 93.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19622-PB 473 GA19622-PB 1..471 1..471 2422 97.9 Plus
Dpse\GA19622-PC 633 GA19622-PC 1..80 1..80 378 93.8 Plus
Dpse\GA22068-PA 512 GA22068-PA 5..230 41..295 181 26.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25792-PA 1024 GM25792-PA 631..1024 82..475 2100 100 Plus
Dsec\GM25792-PA 1024 GM25792-PA 1..80 1..80 387 97.5 Plus
Dsec\GM15722-PA 512 GM15722-PA 5..230 41..295 194 28.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20368-PA 1024 GD20368-PA 631..1024 82..475 2100 100 Plus
Dsim\GD20368-PA 1024 GD20368-PA 1..80 1..80 399 100 Plus
Dsim\GD25199-PA 512 GD25199-PA 5..230 41..295 183 27.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24041-PA 1044 GJ24041-PA 645..1044 76..475 2038 96 Plus
Dvir\GJ24041-PA 1044 GJ24041-PA 1..80 1..80 373 92.5 Plus
Dvir\GJ22318-PA 516 GJ22318-PA 5..230 41..295 205 27.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12089-PA 1007 GK12089-PA 607..1007 75..475 2026 95.3 Plus
Dwil\GK12089-PA 1007 GK12089-PA 1..80 1..80 369 91.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26397-PA 1026 GE26397-PA 633..1026 82..475 2094 100 Plus
Dyak\GE26397-PA 1026 GE26397-PA 1..80 1..80 396 98.8 Plus
Dyak\GE13715-PA 512 GE13715-PA 5..230 41..295 196 29.5 Plus

LD09025.hyp Sequence

Translation from 69 to 1496

> LD09025.hyp
MATAEAQIGVNRNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVA
HGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPAS
FVSDASSKDDSLPCTRLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAV
MDAALLLIAGNESCPQPQTSEHLAAIEIMKLKQILILQNKIDLIKESQAK
EQYEEITKFVQGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFN
APPRLIVIRSFDVNKPGCEVADLKGGVAGGSILSGVLKVGQEIEVRPGVV
TKDSDGNITCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIDPTLCRAD
RLVGQVLGAVGQLPDIYQELEISYYLLRRLLGVRTDGDKKGARVEKLQKN
EILLVNIGSLSTGGRISATKGDLAKIVLTTPVCTEKGEKIALSRRVENHW
RLIGWGQIFGGKTITPVLDSQVAKK*

LD09025.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-PD 475 CG43665-PD 1..475 1..475 2416 100 Plus
eIF-2gamma-PB 475 CG43665-PB 1..475 1..475 2416 100 Plus
eIF-2gamma-PC 467 CG43665-PC 15..467 23..475 2310 100 Plus
Su(var)3-9-PA 635 CG43664-PA 1..89 1..89 390 92.1 Plus
EfSec-PA 511 CG9841-PA 6..230 42..295 201 27.8 Plus