Clone LD09078 Report

Search the DGRC for LD09078

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:90
Well:78
Vector:pBS SK-
Associated Gene/TranscriptBap60-RA
Protein status:LD09078.pep: gold
Preliminary Size:2112
Sequenced Size:2026

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4303 2001-01-01 Release 2 assignment
CG4303 2001-11-09 Blastp of sequenced clone
CG4303 2003-01-01 Sim4 clustering to Release 3
Bap60 2008-04-29 Release 5.5 accounting
Bap60 2008-08-15 Release 5.9 accounting
Bap60 2008-12-18 5.12 accounting

Clone Sequence Records

LD09078.complete Sequence

2026 bp (2026 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069383

> LD09078.complete
CCGCAGCCCTGCCAAACGTTGTAATATCTATCGCCCAGTCGACCACCACC
AGTAATAGTGCATCCCTGTTTTGACGCCATTTTACAGGCGAAATTGTGTG
TGTGTTTGACGCGTTGTTGTATTGAAACAAAAAGGCAGAAATTTTCCTTC
GTCTGCAAAGGGCAATTGTTTACGGCTGGAAAAAAGGGAGGACTTCGTAG
CAAAGATGTCGCAACGCTTTGCACCTGGCCAAGCGCCGGTGCAGTCGCGT
TATCAGCCACCACCACCGGCGCCCGGCATGCGTCCCTATCCGCCGCCAGG
CGCCTCTTTTCCACCGCGCGGGTTTCCCCTGCATCCGAACACTACTCAAC
CTGTTCCCGGCACGGCGAACGTGGCCGGGGTACCGGGAGTTCCTGGAGTA
CCCGGCGTACCGGGACCATCGCTACTGCAGCGCGCCGCCCAACAGCCGGG
CTTTCAGAGCAGCCTTCGCGGTACTGGAGCCGGAGGTGGCGGTGTTGGAT
CCGGCGGAGGCAGCAAGAGGTCAAATGAATCCCGCAGTTTGGGTGGCGGT
GGTAGCAAAAGTGATTTTGCGACGGCCAAAAAGAAAAAGAAGCTGGCCGA
AAAGATACTGCCGCAGAAGGTGCGGGATCTGGTGCCCGAATCGCAAGCGT
ACATGGATCTGCTGACGTTTGAGCGAAAACTGGATGCCACCATAATGCGC
AAACGTCTGGACATCCAGGAGGCCCTCAAGCGCCCCATGAAGCAGAAGCG
CAAGCTGCGCATCTTCATCTCGAACACATTCTATCCCAGCAAGGAGCCCA
CAAATGATGGCGAGGAGGGCGCCGTTGCCTCTTGGGAATTGCGGGTGGAG
GGTCGCCTGTTAGAGGATGGCAAGGGCGATCCCAATACAAAGATCAAACG
CAAGTTTTCGTCGTTTTTCAAGTCGCTGGTTATCGAGCTGGATAAGGAAC
TGTACGGTCCGGACAACCATCTGGTCGAGTGGCATCGCACTCACACCACC
CAGGAGACGGACGGGTTCCAGGTGAAGCGGCCGGGCGATCGCAATGTGCG
CTGCACCATCCTCCTGCTGCTTGACTACCAGCCGCTGCAGTTCAAGCTGG
ACCCGCGACTCGCCAGGTTGCTGGGCGTACACACACAGACCAGGCCGGTG
ATCATATCCGCCCTGTGGCAGTACATCAAGACGCACAAGCTACAGGATGC
CCACGAGCGGGAGTACATCAATTGCGACAAGTATCTGGAGCAGATATTCA
GTTGCCAGCGGATGAAGTTTGCCGAGATACCGCAACGCCTCAATCCGCTG
CTGCATCCGCCCGATCCGATTGTGATCAATCATTTCATTGAGAGCGGTGC
AGAGAACAAGCAGACTGCCTGCTACGACATCGATGTGGAGGTGGATGATA
CGCTCAAAAACCAGATGAACAGCTTCCTGATGAGCACTGCGAGCCAACAG
GAGATCCAGGGGCTGGACACCAAGATCCACGAGACGGTGGACACGATCAA
CCAGATGAAGACGAACAGGGAGTTCTTCCTAAGCTTCGCCAAGGATCCAC
AAATGTTTATTCATCGCTGGATCATCAGTGAGACGAGGGATTTGAAGCTG
ATGACCGATGTAGCTGGCAATCCGGAGGAGGAGCGTCGGGCGGAGTTCTA
TTACCAGCCATGGACGCACGAGGCCGTTTCGCGCTACTTCTTCACCAAGG
TCAACCAGAAGCGGGCCGAATTGGAGCAGGCGCTGGGCATACGCAACGGC
TAGGTGAATGATGAGCTGATCATCTCCACCAGCCAATTCGTGGAGTCCAC
CGTCAAGAGACCTCCATAAACCGTGCGCACGGCAAACTCTTTTTCCTTCG
CCAGTTTAGTTTAAGCTTAAAATATTTCCTTTTTTTCCGACAAGCCGAAC
TCCATCCCGTTCCAAAACGAAAATCCCCTTTGCAGTTGTCCCAAATACCC
ACATCCAGCACAAATATTGGACTTAACTGTAAGCTAATAAAATGGCATAC
AAATATAAAAAAAAAAAAAAAAAAAA

LD09078.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Bap60-RA 2067 Bap60-RA 40..2049 1..2010 10050 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13048810..13050093 1597..314 6405 99.9 Minus
chrX 22417052 chrX 13048341..13048751 2006..1596 2025 99.5 Minus
chrX 22417052 chrX 13050162..13050474 313..1 1565 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13157914..13159197 1597..314 6420 100 Minus
X 23542271 X 13157441..13157855 2010..1596 2075 100 Minus
X 23542271 X 13159266..13159578 313..1 1565 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13166012..13167295 1597..314 6420 100 Minus
X 23527363 X 13165539..13165953 2010..1596 2075 100 Minus
X 23527363 X 13167364..13167676 313..1 1565 100 Minus
Blast to na_te.dros performed 2019-03-16 10:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
invader1 4032 invader1 INVADER 4032bp 2175..2215 1890..1929 121 80.5 Plus

LD09078.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:17:33 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13048341..13048749 1598..2006 99 <- Minus
chrX 13048810..13050093 314..1597 99 <- Minus
chrX 13050162..13050474 1..313 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:42:00 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
Bap60-RA 1..1548 206..1753 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:06 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
Bap60-RA 1..1548 206..1753 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:39:05 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
Bap60-RA 1..1548 206..1753 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:44 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
Bap60-RA 1..1548 206..1753 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:47 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
Bap60-RA 1..1548 206..1753 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:54 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
Bap60-RA 1..2006 1..2006 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:06 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
Bap60-RA 1..2006 1..2006 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:05 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
Bap60-RA 1..1936 71..2006 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:44 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
Bap60-RA 1..2006 1..2006 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:47 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
Bap60-RA 1..1936 71..2006 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:33 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
X 13159266..13159578 1..313 100   Minus
X 13157445..13157853 1598..2006 100 <- Minus
X 13157914..13159197 314..1597 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:33 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
X 13159266..13159578 1..313 100   Minus
X 13157445..13157853 1598..2006 100 <- Minus
X 13157914..13159197 314..1597 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:33 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
X 13159266..13159578 1..313 100   Minus
X 13157445..13157853 1598..2006 100 <- Minus
X 13157914..13159197 314..1597 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:05 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13051478..13051886 1598..2006 100 <- Minus
arm_X 13051947..13053230 314..1597 100 <- Minus
arm_X 13053299..13053611 1..313 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:03 Download gff for LD09078.complete
Subject Subject Range Query Range Percent Splice Strand
X 13165543..13165951 1598..2006 100 <- Minus
X 13166012..13167295 314..1597 100 <- Minus
X 13167364..13167676 1..313 100   Minus

LD09078.hyp Sequence

Translation from 205 to 1752

> LD09078.hyp
MSQRFAPGQAPVQSRYQPPPPAPGMRPYPPPGASFPPRGFPLHPNTTQPV
PGTANVAGVPGVPGVPGVPGPSLLQRAAQQPGFQSSLRGTGAGGGGVGSG
GGSKRSNESRSLGGGGSKSDFATAKKKKKLAEKILPQKVRDLVPESQAYM
DLLTFERKLDATIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPSKEPTN
DGEEGAVASWELRVEGRLLEDGKGDPNTKIKRKFSSFFKSLVIELDKELY
GPDNHLVEWHRTHTTQETDGFQVKRPGDRNVRCTILLLLDYQPLQFKLDP
RLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREYINCDKYLEQIFSC
QRMKFAEIPQRLNPLLHPPDPIVINHFIESGAENKQTACYDIDVEVDDTL
KNQMNSFLMSTASQQEIQGLDTKIHETVDTINQMKTNREFFLSFAKDPQM
FIHRWIISETRDLKLMTDVAGNPEEERRAEFYYQPWTHEAVSRYFFTKVN
QKRAELEQALGIRNG*

LD09078.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
Bap60-PA 515 CG4303-PA 1..515 1..515 2722 100 Plus

LD09078.pep Sequence

Translation from 205 to 1752

> LD09078.pep
MSQRFAPGQAPVQSRYQPPPPAPGMRPYPPPGASFPPRGFPLHPNTTQPV
PGTANVAGVPGVPGVPGVPGPSLLQRAAQQPGFQSSLRGTGAGGGGVGSG
GGSKRSNESRSLGGGGSKSDFATAKKKKKLAEKILPQKVRDLVPESQAYM
DLLTFERKLDATIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPSKEPTN
DGEEGAVASWELRVEGRLLEDGKGDPNTKIKRKFSSFFKSLVIELDKELY
GPDNHLVEWHRTHTTQETDGFQVKRPGDRNVRCTILLLLDYQPLQFKLDP
RLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREYINCDKYLEQIFSC
QRMKFAEIPQRLNPLLHPPDPIVINHFIESGAENKQTACYDIDVEVDDTL
KNQMNSFLMSTASQQEIQGLDTKIHETVDTINQMKTNREFFLSFAKDPQM
FIHRWIISETRDLKLMTDVAGNPEEERRAEFYYQPWTHEAVSRYFFTKVN
QKRAELEQALGIRNG*

LD09078.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20965-PA 509 GF20965-PA 1..509 1..515 2372 94.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19519-PA 515 GG19519-PA 1..515 1..515 2740 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24118-PA 515 GH24118-PA 1..515 1..515 2341 89.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Bap60-PA 515 CG4303-PA 1..515 1..515 2722 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16377-PA 504 GI16377-PA 1..504 1..515 2375 90.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15872-PA 506 GL15872-PA 1..506 1..515 2371 92.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18095-PA 506 GA18095-PA 1..506 1..515 2371 92.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11510-PA 509 GM11510-PA 31..509 37..515 2579 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15903-PA 515 GD15903-PA 1..515 1..515 2762 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16750-PA 505 GJ16750-PA 1..505 1..515 2366 90.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16421-PA 529 GK16421-PA 1..529 1..515 2345 89.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Bap60-PA 515 GE16174-PA 1..515 1..515 2734 98.6 Plus