Clone LD09158 Report

Search the DGRC for LD09158

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:91
Well:58
Vector:pBS SK-
Associated Gene/TranscriptVhaAC45-RA
Protein status:LD09158.pep: gold
Preliminary Size:1951
Sequenced Size:1899

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8029 2001-01-01 Release 2 assignment
CG8029 2003-01-01 Sim4 clustering to Release 3
CG8029 2003-01-14 Blastp of sequenced clone
CG8029 2008-04-29 Release 5.5 accounting
CG8029 2008-08-15 Release 5.9 accounting
CG8029 2008-12-18 5.12 accounting

Clone Sequence Records

LD09158.complete Sequence

1899 bp (1899 high quality bases) assembled on 2003-01-14

GenBank Submission: BT003279

> LD09158.complete
CGACGTCGAGCAAGGCAAAGCGAAAATTTTCACCACCATTTTTCGTTTGT
AGTTTCAGTTCACTTTTCGGTTGGTTTTTAGTGCCTCTTGCGTTCTCCTT
GGTTCCTTACTTATGCATTTTTCGTTCTCCTTTGTTTCCATTAAACCCCC
ACCGAAGTAAGCGAATCCAGCGCGATGTTGTGGAAATCGCTGATTGCGTT
GTGCGTCATTGGGGCTGCCGTGGCGGAGCAAACGCCCGTCTTTTTGTGGG
GAGCCAACAGTGTGGCGAAACCCTCCCTGAAGACGGTGTCCCAAGTGGAG
TTTGCCGAGCAGTTGGCTGCATTGCTGGAAGATCACATGGTCGTGGCCTT
CGAGGAAAATGGCCTGAGCAGCAAGGACTTCCTGTGCTCCAACTCCCAGG
CGCAGTCCTGCTACGCCCAGCTGCAGGGAGTGAGCCCCAAGACCTACTAC
ACCAGCGTGGAGAACCCCTCGGAGGCACTGCGCTCAGTGGCCGCCAAGCG
CGAGCACAACTCCATCGATGCCAGTGGAAAGCTGACCACGCCGGCCAAGT
GTGCCGTAGGTACGGCCCTGTTTGTGACCTTCGAGGACGCCGCCGAGAGC
CGGGAGGCCAGTCTGGAGTCACATGACGCCGCCATAGCTGCTATCAGCAA
GCAGTTCGAGTGCAAGGTGGCTTATCTGTACCTGGCCGCCCCCTCCACGG
CTCCTGTGGTGCAGCGTCGTACCCGCCGTGACACCGCCGCCACAACCGGT
GGCATCATGTGGAAGTCGACCAATCAGTTTCAGATCTTCTACACTGCCCT
GCTCTACAACGGCAACCCCATCACCGTCACCGACCTCAAGCTCACCAACT
CTAGCTCTACCAAGCTATCCGTTGTTATGGACACATCTGTCGCCGACAAG
CCAATCACCTTTGACGTTGTTTATAATGGCGGATACTTTAGTCTGAGCAA
TTTGGTCTACGACAACAACAACTTCCGCTCCAGCGGCGTGAATGCCCCAA
CCACGTTCTCTTACTCGTGCGGCAACCTCACCCTCGAGTCCGCGGCCGTC
AACAACATGTACAACACCCTGAGCTTCAAGTCCCTGCAGCTGCAGGCTCC
CTTCGATGGTACGTACAAGGAGGACTTTCCCTTCGGCGACTCCTGGGACT
GTGTGGGCTTCGTGACGCCCGGTATCCTGATGGGACTGTTTGTGGTCGCC
CTACTGCTGGTCATCATGTTCGTCGGCGTCTGCTGGATGATGGACATCAA
CACGATGGACCGCTTCGACGATCCCAAGGGCAAGACTATCACCATCAATG
CCGCCGCCGAGTAAACCGCCTACATCATCGGTTCACACCTTATTTGATTG
TTCAATGCGCACTCAATATTCATTCCTTTATTCCTTCAGTCTATCCACAT
GTATATGTTAACGAATCAATACTTAATACCGTACACGCATTACACATAAC
ACATAACCGGGAAATTAGTCCTCACAATTTGTATCGTATCCGTAATTTTC
GCCGCCAAGGATCAGTTTACGTTCAGCATCACAGCGTTGCTGATTCTTGT
CGCCGACAAATTGCCTGAGGTTTTGCTTGCACCGACGCAGCATCCAGTAT
TTCATTTAGAATAGCCCCTAAATGTCGTTTATCGAAGGAACTTTAAAAGA
CGCACATGTGTGTGTGTGTTTAAGAGCGCGCGCGTGTGTGTGTGTGCACA
TGGGCAGTAAATCTAATCCGAAGTATATCTAAGTGTTTTATAGTTTCTTG
TTTGGCGCAAATATGCGAGACTAATTTATGCCTCTGTATGATAGTTTGTC
ATTTGTGCAACCCTCCTGTTGTTCGCAGGCCCAACGAAAATAAAGTTTTT
TTCAATTGTGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD09158.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8029-RA 2154 CG8029-RA 172..2038 1..1867 9320 99.9 Plus
CG8029-RB 2066 CG8029-RB 240..1950 157..1867 8540 99.9 Plus
CG8029-RB 2066 CG8029-RB 172..240 1..69 345 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5095987..5097224 625..1862 6175 99.9 Plus
chr2R 21145070 chr2R 5095162..5095421 1..260 1300 100 Plus
chr2R 21145070 chr2R 5095654..5095915 364..625 1295 99.6 Plus
chr2R 21145070 chr2R 5095481..5095587 257..363 535 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9208416..9209658 625..1867 6200 99.9 Plus
2R 25286936 2R 9208083..9208344 364..625 1310 100 Plus
2R 25286936 2R 9207591..9207850 1..260 1300 100 Plus
2R 25286936 2R 9207910..9208016 257..363 535 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9209615..9210857 625..1867 6200 99.9 Plus
2R 25260384 2R 9209282..9209543 364..625 1310 100 Plus
2R 25260384 2R 9208790..9209049 1..260 1300 100 Plus
2R 25260384 2R 9209109..9209215 257..363 535 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:09:51 has no hits.

LD09158.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:10:46 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5095162..5095421 1..260 100 -> Plus
chr2R 5095485..5095587 261..363 100 -> Plus
chr2R 5095654..5095915 364..625 99 -> Plus
chr2R 5095988..5097226 626..1864 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:42:03 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
CG8029-RA 1..1140 175..1314 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:57:28 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RA 1..1140 175..1314 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:06 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RB 1..1140 175..1314 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:48:17 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
CG8029-RA 1..1140 175..1314 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:41:45 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RB 1..1140 175..1314 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:13:37 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
CG8029-RA 29..1892 1..1864 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:57:28 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RA 29..1892 1..1864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:06 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RA 31..1894 1..1864 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:48:17 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
CG8029-RA 29..1892 1..1864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:41:45 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RA 31..1894 1..1864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:46 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9208083..9208344 364..625 100 -> Plus
2R 9207591..9207850 1..260 100 -> Plus
2R 9207914..9208016 261..363 100 -> Plus
2R 9208417..9209655 626..1864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:46 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9208083..9208344 364..625 100 -> Plus
2R 9207591..9207850 1..260 100 -> Plus
2R 9207914..9208016 261..363 100 -> Plus
2R 9208417..9209655 626..1864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:46 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9208083..9208344 364..625 100 -> Plus
2R 9207591..9207850 1..260 100 -> Plus
2R 9207914..9208016 261..363 100 -> Plus
2R 9208417..9209655 626..1864 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:06 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5095096..5095355 1..260 100 -> Plus
arm_2R 5095419..5095521 261..363 100 -> Plus
arm_2R 5095588..5095849 364..625 100 -> Plus
arm_2R 5095922..5097160 626..1864 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:42 Download gff for LD09158.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9208790..9209049 1..260 100 -> Plus
2R 9209113..9209215 261..363 100 -> Plus
2R 9209282..9209543 364..625 100 -> Plus
2R 9209616..9210854 626..1864 99   Plus

LD09158.pep Sequence

Translation from 174 to 1313

> LD09158.pep
MLWKSLIALCVIGAAVAEQTPVFLWGANSVAKPSLKTVSQVEFAEQLAAL
LEDHMVVAFEENGLSSKDFLCSNSQAQSCYAQLQGVSPKTYYTSVENPSE
ALRSVAAKREHNSIDASGKLTTPAKCAVGTALFVTFEDAAESREASLESH
DAAIAAISKQFECKVAYLYLAAPSTAPVVQRRTRRDTAATTGGIMWKSTN
QFQIFYTALLYNGNPITVTDLKLTNSSSTKLSVVMDTSVADKPITFDVVY
NGGYFSLSNLVYDNNNFRSSGVNAPTTFSYSCGNLTLESAAVNNMYNTLS
FKSLQLQAPFDGTYKEDFPFGDSWDCVGFVTPGILMGLFVVALLLVIMFV
GVCWMMDINTMDRFDDPKGKTITINAAAE*

LD09158.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11814-PA 378 GF11814-PA 1..378 1..379 1649 82.9 Plus
Dana\GF15670-PA 423 GF15670-PA 8..407 6..360 189 22.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23426-PA 379 GG23426-PA 1..379 1..379 1896 92.9 Plus
Dere\GG10259-PA 428 GG10259-PA 10..408 6..358 185 21 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21865-PA 382 GH21865-PA 1..382 1..379 1288 66.6 Plus
Dgri\GH11675-PA 419 GH11675-PA 23..410 21..368 188 21.4 Plus
Dgri\GH18387-PA 387 GH18387-PA 285..382 274..373 160 35.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC45-PA 379 CG8029-PA 1..379 1..379 1943 100 Plus
VhaAC45-PB 379 CG8029-PB 1..379 1..379 1943 100 Plus
CG5421-PB 426 CG5421-PB 10..418 6..367 183 21.5 Plus
CG5421-PA 426 CG5421-PA 10..418 6..367 183 21.5 Plus
CG31030-PA 384 CG31030-PA 281..379 273..373 153 35 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20366-PA 387 GI20366-PA 1..387 1..379 1315 64.4 Plus
Dmoj\GI17120-PA 415 GI17120-PA 4..174 13..189 180 27.6 Plus
Dmoj\GI23379-PA 386 GI23379-PA 284..381 274..373 162 38.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17578-PA 383 GL17578-PA 1..383 1..379 1610 77.5 Plus
Dper\GL18769-PA 420 GL18769-PA 8..405 6..364 160 20.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20777-PA 383 GA20777-PA 1..383 1..379 1612 77.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21109-PA 379 GM21109-PA 1..379 1..379 1868 96.3 Plus
Dsec\GM26197-PA 426 GM26197-PA 10..189 6..187 167 26.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10644-PA 379 GD10644-PA 1..379 1..379 1965 96.8 Plus
Dsim\GD22118-PA 426 GD22118-PA 10..406 6..358 173 20.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22093-PA 389 GJ22093-PA 1..389 1..379 1349 66.9 Plus
Dvir\GJ16159-PA 423 GJ16159-PA 8..179 7..185 203 27.3 Plus
Dvir\GJ10374-PA 384 GJ10374-PA 280..379 274..373 156 37.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17837-PA 389 GK17837-PA 1..389 1..379 1296 68.9 Plus
Dwil\GK14624-PA 417 GK14624-PA 3..413 1..374 202 24.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19265-PA 379 GE19265-PA 1..379 1..379 1908 94.2 Plus
Dyak\GE12261-PA 427 GE12261-PA 10..191 6..189 184 25.9 Plus

LD09158.hyp Sequence

Translation from 174 to 1313

> LD09158.hyp
MLWKSLIALCVIGAAVAEQTPVFLWGANSVAKPSLKTVSQVEFAEQLAAL
LEDHMVVAFEENGLSSKDFLCSNSQAQSCYAQLQGVSPKTYYTSVENPSE
ALRSVAAKREHNSIDASGKLTTPAKCAVGTALFVTFEDAAESREASLESH
DAAIAAISKQFECKVAYLYLAAPSTAPVVQRRTRRDTAATTGGIMWKSTN
QFQIFYTALLYNGNPITVTDLKLTNSSSTKLSVVMDTSVADKPITFDVVY
NGGYFSLSNLVYDNNNFRSSGVNAPTTFSYSCGNLTLESAAVNNMYNTLS
FKSLQLQAPFDGTYKEDFPFGDSWDCVGFVTPGILMGLFVVALLLVIMFV
GVCWMMDINTMDRFDDPKGKTITINAAAE*

LD09158.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC45-PA 379 CG8029-PA 1..379 1..379 1943 100 Plus
VhaAC45-PB 379 CG8029-PB 1..379 1..379 1943 100 Plus
CG5421-PB 426 CG5421-PB 10..418 6..367 183 21.5 Plus
CG5421-PA 426 CG5421-PA 10..418 6..367 183 21.5 Plus
CG31030-PA 384 CG31030-PA 281..379 273..373 153 35 Plus