Clone LD09231 Report

Search the DGRC for LD09231

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:92
Well:31
Vector:pBS SK-
Associated Gene/Transcriptkuk-RA
Protein status:LD09231.pep: gold
Preliminary Size:2278
Sequenced Size:2260

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5175 2001-01-01 Release 2 assignment
CG5175 2002-03-19 Blastp of sequenced clone
CG5175 2003-01-01 Sim4 clustering to Release 3
kuk 2008-04-29 Release 5.5 accounting
kuk 2008-08-15 Release 5.9 accounting
kuk 2008-12-18 5.12 accounting

Clone Sequence Records

LD09231.complete Sequence

2260 bp (2260 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094778

> LD09231.complete
TCCCACTAGCGCGTTGGTTATAATTTGTTTGTATCGGCGTCGGTTGAATT
GAAATCAGTTAATTTGTCGCAAAGTAATTTCTGTATAAGTATTAGCTGTG
CTGCTAGAACTAGAACGCTACAAGAGATCGTGCAACGCATCGAAGGAAAC
CCAATCAATGTTAAGCAAAATGGCTAGCAACACAAGCGGCGGGGGAGGTA
CCACTTCAGGCACTGGAACGGGACGTCGTCTGCCACTCTCGCTGAGCGGC
GGTTCCACCGTCACGCGCTTGCAGCAATCTTCTGGCAGCAACGGCCGCTC
AAATAGCCCCCAAAATGGGAACAAAAAGATCACAGAGTCATTTTTGCCGG
TAAAAAAGAGCAACCAACCGCGGACCACTTCGACTGGATCCACCGGATCC
AGCCAGAACGGCGTAAGCAAGCCCACAAATGGCAAAGATAAGTCACAGAA
TGGCAGCTCAACAGGCAAAGACCAGAAGGTAGAGAAATCTAAAGATAAGT
TGCCGGAAAAGAAGGCAAAGGAAGTGGGTGCCGAGAATAAGGATAAGGAT
GGCGCTGCCGAGATGACAGATATGGAGGTTGTGGTCGAAAATAAGCAAAA
GGAGGTGGTATCCGAAAATAAGCAAAATGAGGTGGTATCTGAAAATAAGG
AAGTGGTATCTGAAAATAAGGAGGTGGTATCCGAAAATAAGGAGGTGGCT
TCCGAAAAAAAGGTGGTGGTAGCTGAAGTTCCCTCCGACAAAGACGACAA
CGGAGAGACCAAAAAAGATGATGCTACCGTTGAGAGTACTGCTCCTGCTT
CTCAAACGCCTGCGGATGCTGCGGTAATCATCGATGAAGTAGTGTTTATT
CCCGATCTCAGCACTCCTACTAAGGATCGCAAGTCTACACGCAAGTCGGG
TAGCCAGCAAAAGTCACCCATCAGCAAGGCAAGCAACGCTTCGCCTGTCC
AGAAGATAAAAACCGAAGCAGTTTCTTCATCGACATCGGGCTCTTTGACT
CCACAAGAAGATGTCGATATGGAACCGCTACAAGTGGATGCCTCTCCCAT
ACGCAGCGTCCACGGCAATTTGAATGCCGTGCCGACGGCTACATCCACGC
CCGGACGCAGTCTCTTCAGTTTCCGTGGTAGCAACAAGCAAAGCACCGAG
GTAGAGCTGGCTGCCCAGACTTCCAGCTCGCCGGCAGGAACTCCGGCTCG
CACTTTCGCCCAGATCAGCGGCAGGCGTAGCATACGACCCATCGACTCAC
TGACGCCCTCGAAAATAGGCACCTACAGGTGCGGGAACAGCGATCTGGAC
ACCTCGAACTGCACGAACGCAAGCATGAATGCCACAGTCGGATCAGAGAT
CCCCAACAGCTCGTCATTTTCATTTTCATTCTTTGGCCGTGGCCGCAAGC
GTGAACGCACTCCCCCACCACTGACGGCCTCTCAGTCGACCAGTGACCTG
GGCCACGACGTGGATATGTCGCCGCCAAAGCGCGCCCGCTTCGACTTGTT
CAGCCTGAATTTGGCTTCTCCCTTTAGCTTGCTGCGCTCGAGATTCTCCA
AGGCAACAATCGGTACTCCGACCCGTCTGCGTCTGGAGCCGAACAGTTCC
GGCGTGGAGGAGCAACATCTGAACACATCTACGACTGGCGTACCAGAAGA
GGTTGATGTGGAGGAGGAACAACCGGCCGAAGACGTGACCGTTGGTCAGG
AGGCCGGAGCGGAGGAAATCCCCGCCAAGAAGGATGTCGAGGATAAGAAC
GTCAATGGCCAGGATGGCGACAAGGAGTCCAGCGATGGAGAAAACATTGA
CCCTGTTGTAGAGGTGGCTGATGTTGCCGCGGTCGCTGCCGAGGGCCGAT
CCATCTGCTCAATTATGTAATACAACAGGCCAGACCACATAATACCCTTC
CCTTAGTTGATAAGATTGTCTTAGCATATCTGTTTCACCCTCTTTGGTAA
TTTATGTTCTGACGTAAAGTAACATGTTAAGAGAAAGTTTTATAGCTAGG
ACTCGTCGGGTCGTTTTTCGTCAGGAAAATCACCGTTCTGTCACAGATTC
CTTGCTGGTTGTCTCCTCGCGAACTCCCGGGTCGCAGACAACCACCGACG
AATCTGACGATCTGTACCCAGGCAAAAGTGGGTACCAACCGTAGAAAACC
CATACTTGTAGTAATCTGTTTAAGAAATTTTTATATAAAACACATATTTG
TGAAAGTCTTTTCGCCGAGTTCATGTATTGTTTCGCTATATCAAAAAAAA
AAAAAAAAAA

LD09231.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
kuk.i 2912 kuk.i 34..2293 1..2260 11270 99.9 Plus
kuk.k 2585 kuk.k 34..2293 1..2260 11270 99.9 Plus
kuk.a 2295 kuk.a 619..2266 613..2260 8195 99.8 Plus
kuk.a 2295 kuk.a 34..725 1..698 3255 97.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12907132..12909253 123..2242 10305 99.2 Plus
chr3R 27901430 chr3R 12904702..12904825 1..124 620 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17082662..17084799 123..2260 10660 99.9 Plus
3R 32079331 3R 17080233..17080356 1..124 620 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16823493..16825630 123..2260 10660 99.9 Plus
3R 31820162 3R 16821064..16821187 1..124 620 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:05:40 has no hits.

LD09231.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:06:20 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12904702..12904825 1..124 100 -> Plus
chr3R 12907134..12909253 125..2242 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:42:06 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
kuk-RB 1..1713 158..1870 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:29:09 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
kuk-RB 1..1713 158..1870 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:02 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
kuk-RA 1..1713 158..1870 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:03:19 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
kuk-RB 1..1713 158..1870 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:49 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
kuk-RA 1..1713 158..1870 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:55:33 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
kuk-RA 5..2246 1..2242 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:29:09 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
kuk-RA 5..2246 1..2242 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:02 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
kuk-RA 1..2231 12..2242 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:03:19 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
kuk-RA 5..2246 1..2242 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:49 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
kuk-RA 1..2231 12..2242 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:06:20 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17080233..17080356 1..124 100 -> Plus
3R 17082664..17084781 125..2242 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:06:20 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17080233..17080356 1..124 100 -> Plus
3R 17082664..17084781 125..2242 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:06:20 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17080233..17080356 1..124 100 -> Plus
3R 17082664..17084781 125..2242 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:02 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12905955..12906078 1..124 100 -> Plus
arm_3R 12908386..12910503 125..2242 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:36:49 Download gff for LD09231.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16823495..16825612 125..2242 100   Plus
3R 16821064..16821187 1..124 100 -> Plus

LD09231.pep Sequence

Translation from 157 to 1869

> LD09231.pep
MLSKMASNTSGGGGTTSGTGTGRRLPLSLSGGSTVTRLQQSSGSNGRSNS
PQNGNKKITESFLPVKKSNQPRTTSTGSTGSSQNGVSKPTNGKDKSQNGS
STGKDQKVEKSKDKLPEKKAKEVGAENKDKDGAAEMTDMEVVVENKQKEV
VSENKQNEVVSENKEVVSENKEVVSENKEVASEKKVVVAEVPSDKDDNGE
TKKDDATVESTAPASQTPADAAVIIDEVVFIPDLSTPTKDRKSTRKSGSQ
QKSPISKASNASPVQKIKTEAVSSSTSGSLTPQEDVDMEPLQVDASPIRS
VHGNLNAVPTATSTPGRSLFSFRGSNKQSTEVELAAQTSSSPAGTPARTF
AQISGRRSIRPIDSLTPSKIGTYRCGNSDLDTSNCTNASMNATVGSEIPN
SSSFSFSFFGRGRKRERTPPPLTASQSTSDLGHDVDMSPPKRARFDLFSL
NLASPFSLLRSRFSKATIGTPTRLRLEPNSSGVEEQHLNTSTTGVPEEVD
VEEEQPAEDVTVGQEAGAEEIPAKKDVEDKNVNGQDGDKESSDGENIDPV
VEVADVAAVAAEGRSICSIM*

LD09231.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23214-PA 534 GF23214-PA 28..534 23..570 1063 49.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21984-PA 548 GG21984-PA 1..548 5..570 1844 75.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14452-PA 552 GH14452-PA 20..552 23..570 767 43.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
kuk-PC 570 CG5175-PC 1..570 1..570 2854 100 Plus
kuk-PB 570 CG5175-PB 1..570 1..570 2854 100 Plus
kuk-PA 570 CG5175-PA 1..570 1..570 2854 100 Plus
Muc68Ca-PA 3135 CG18331-PA 773..1341 6..565 171 20.4 Plus
Muc68Ca-PA 3135 CG18331-PA 693..1261 6..565 165 20.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22961-PA 592 GI22961-PA 141..592 188..570 769 46.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23524-PA 550 GL23524-PA 23..550 23..570 899 47.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18711-PC 554 GA18711-PC 1..554 1..570 896 47.2 Plus
Dpse\GA18711-PB 554 GA18711-PB 1..554 1..570 896 47.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15205-PA 594 GM15205-PA 19..594 23..570 2194 84.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19137-PA 572 GD19137-PA 1..572 5..570 2244 87.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14541-PA 548 GJ14541-PA 199..548 221..570 814 54 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22739-PA 572 GK22739-PA 18..572 21..570 858 45.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24608-PA 550 GE24608-PA 19..550 23..570 1924 78.2 Plus

LD09231.hyp Sequence

Translation from 157 to 1869

> LD09231.hyp
MLSKMASNTSGGGGTTSGTGTGRRLPLSLSGGSTVTRLQQSSGSNGRSNS
PQNGNKKITESFLPVKKSNQPRTTSTGSTGSSQNGVSKPTNGKDKSQNGS
STGKDQKVEKSKDKLPEKKAKEVGAENKDKDGAAEMTDMEVVVENKQKEV
VSENKQNEVVSENKEVVSENKEVVSENKEVASEKKVVVAEVPSDKDDNGE
TKKDDATVESTAPASQTPADAAVIIDEVVFIPDLSTPTKDRKSTRKSGSQ
QKSPISKASNASPVQKIKTEAVSSSTSGSLTPQEDVDMEPLQVDASPIRS
VHGNLNAVPTATSTPGRSLFSFRGSNKQSTEVELAAQTSSSPAGTPARTF
AQISGRRSIRPIDSLTPSKIGTYRCGNSDLDTSNCTNASMNATVGSEIPN
SSSFSFSFFGRGRKRERTPPPLTASQSTSDLGHDVDMSPPKRARFDLFSL
NLASPFSLLRSRFSKATIGTPTRLRLEPNSSGVEEQHLNTSTTGVPEEVD
VEEEQPAEDVTVGQEAGAEEIPAKKDVEDKNVNGQDGDKESSDGENIDPV
VEVADVAAVAAEGRSICSIM*

LD09231.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
kuk-PC 570 CG5175-PC 1..570 1..570 2854 100 Plus
kuk-PB 570 CG5175-PB 1..570 1..570 2854 100 Plus
kuk-PA 570 CG5175-PA 1..570 1..570 2854 100 Plus
Muc68Ca-PA 3135 CG18331-PA 773..1341 6..565 171 20.4 Plus
Muc68Ca-PA 3135 CG18331-PA 693..1261 6..565 165 20.4 Plus