Clone LD09343 Report

Search the DGRC for LD09343

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:93
Well:43
Vector:pBS SK-
Associated Gene/TranscriptCG4089-RA
Protein status:LD09343.pep: gold
Preliminary Size:1981
Sequenced Size:2038

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4089 2001-01-01 Release 2 assignment
CG4089 2001-10-10 Blastp of sequenced clone
CG4089 2003-01-01 Sim4 clustering to Release 3
CG4089 2008-04-29 Release 5.5 accounting
CG4089 2008-08-15 Release 5.9 accounting
CG4089 2008-12-18 5.12 accounting

Clone Sequence Records

LD09343.complete Sequence

2038 bp (2038 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061104

> LD09343.complete
TTTGGTTGCCGTGGAGATCGCGAACAAAAAAGTCTGTTTTAAATTAGTCG
CTTGTATTAGCATTTGATAGATAGAACTCCCGGACGTGGAATGGATGCCA
GTGTAGTGGAGAATGCTCCTAATCAAAAGGAGGTAGATGGCAAAATGGCT
ACAACGGAGGAGTCCGAAAAGCCATCGAACAGCATTGGACTGCTGCCCAT
TATGATATTTCTGGCGGCGACAGTGGCCACGGCCGTGGTGGTGGAGGTGC
TGCCCCATGCCAGCAGAGTCTTCCCCTGGAAGTTAGCAGATTCTTCAGCG
GATCAGCTGCAGCCACCGCCCACATATGCGATCTTTGGTCGCAGTCCCAC
GGAGGAGCACCTGGTGCATGTGGTCAATGTGCTGCACAAGTTTGGCTATA
AAAGAGTGGGAGTTAACGATAGCTGGAATCTCTTGTGGGCCCACGACTAT
CCATTTCTTTCGTTCGCCAATCTCAAGAATCTCGGACAGCATCAGGTGGT
GAACCATTACCCAGGCTGCGGTTACCTAACTAACAAGGTGGACCTATGCA
CCACCCAGTTGCCCTTTCTACCGCGTGCCTTTCGATTGCCAGCGGAACGG
GAGGAGTTCCTGGACTACGCCAGGGAGAATCCCCAGGCACTGTTCGTCCA
GAAGCACAACGAGCATCGGCACATTAAGGTGCGCGCTCCCGCTGACATTG
CCTTCGGATCGAACGACTCCTTTGTCCAGGAATTCGTGCAGCGACCCTAT
CTGGTGGATGGCCACAAGTTCGACATCGGCGTCTATGTAGTCATTACCTC
GGTTAATCCTTTGCGAGTCTACATCTACACGGGCGACGTTCTGTTCCGGT
ATTGCCCGGTGAAATACCATCCCTTCGATGCCGAGAATGTGGACAAGTAC
ATTGTGGGGGATGACTATTTACCCACCTGGGAGGTTCCTTCGCTGCGCAA
GTACTACAATCGCTTTGGCGGCAGCATGCGCACCGTTTTTGAAGCCTATG
TCCGAGATCAGGGCAAGGATCCCGCCCAGATTTGGCCTCAAGTGGAGCAC
ATAGTACGCACCACGATTGCGGCCAAGGAGAAGGACATCGTTAACATACT
GCGATCCTACAGGACTCACAACTTTTTCGATCTGATGCGATTCGATTTGT
TTATTGACGAGGATCTGAAAGTTTTTCTCATGGAGGCCAACATGTCTCCC
AATCTTTCTTCTGCCCATTTCAAGCCCAACTCGCTGTTGTACGAGCAAGT
TCTATACAGCGTGTTTAATTTGGTTGGCATAAGGCCACTTACATCAACAA
GTGGCGCATTGCTCGGCGAAAGCAGCGAGATGATCACAACCGATAAAAAC
CTGTCCACCGACTTGAATAAATGCGCTGCACACGATTGCGACAAGTCCTG
CAACAAGGAGGAGTGCGATCTTTGCCTGCAATGCCTCAGTGGCTCGGAGT
ACAAGATGCTGCAACAGGCTCATCAGGAGCATCTGCATCGCGTGGACATG
AAGCGCATTTTCCCTAAGCCCATTCGCGATCCAATGAGATTCGATGTTAT
GGCGGAAACTGCAAACATGTCAAAGAAAAACGCATGGATGACCCGCTGGT
TCCACAACAAATGCCAATTTGATGCTGTCTGGTGCAATTAGATCAATTTA
ATTATCTTCTTATGTAAATACTTACTGTGACATGGTAACCTCTTATGCTC
AGCATTAGTTAATTGGCCACCGATACTTAGTTCTTAATAGGTAAAATATC
ATATGGGCTTAATGTTGTAAATGGCCATTTAGTCATTAGCATTCAATTGG
AATGGAAACCATCTAGACACTTTGGCAATGAAACATGTACAAATACAAAA
CCGTCCTTAAATTATTTTAAATTCTTAGCGCTTTTAAATTGTTTAAGCCT
CCATTTCTAGTAAAGATTTAAAATTGACCATGAAAGGTTAATATATTGTA
TACCTAATCTTACAAAGGGAACTATTATAATAAAAATCTCCTTCTCACTT
TATTAGGCTCTACACAATCAAAAAAAAAAAAAAAAAAA

LD09343.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-RA 2102 CG4089-RA 32..2052 1..2021 10105 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6641018..6642184 145..1311 5730 99.4 Plus
chr3R 27901430 chr3R 6642512..6643006 1525..2019 2475 100 Plus
chr3R 27901430 chr3R 6642240..6642453 1311..1524 1025 98.6 Plus
chr3R 27901430 chr3R 6640807..6640950 1..144 720 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10815502..10816668 145..1311 5835 100 Plus
3R 32079331 3R 10816996..10817492 1525..2021 2485 100 Plus
3R 32079331 3R 10816724..10816937 1311..1524 1070 100 Plus
3R 32079331 3R 10815291..10815434 1..144 720 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10556333..10557499 145..1311 5835 100 Plus
3R 31820162 3R 10557827..10558323 1525..2021 2485 100 Plus
3R 31820162 3R 10557555..10557768 1311..1524 1070 100 Plus
3R 31820162 3R 10556122..10556265 1..144 720 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:52:14 has no hits.

LD09343.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:53:25 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6640807..6640950 1..144 100 -> Plus
chr3R 6641018..6642183 145..1310 99 -> Plus
chr3R 6642240..6642453 1311..1524 98 -> Plus
chr3R 6642512..6643006 1525..2019 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:42:12 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 1..1551 91..1641 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:44 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 1..1551 91..1641 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:53:47 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 1..1551 91..1641 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:47 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 1..1551 91..1641 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:50:06 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 1..1551 91..1641 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:30 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 1..2019 1..2019 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:44 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 1..2019 1..2019 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:53:47 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 4..2022 1..2019 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:47 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 1..2019 1..2019 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:50:06 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 4..2022 1..2019 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:53:25 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10815291..10815434 1..144 100 -> Plus
3R 10815502..10816667 145..1310 100 -> Plus
3R 10816724..10816937 1311..1524 100 -> Plus
3R 10816996..10817490 1525..2019 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:53:25 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10815291..10815434 1..144 100 -> Plus
3R 10815502..10816667 145..1310 100 -> Plus
3R 10816724..10816937 1311..1524 100 -> Plus
3R 10816996..10817490 1525..2019 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:53:25 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10815291..10815434 1..144 100 -> Plus
3R 10815502..10816667 145..1310 100 -> Plus
3R 10816724..10816937 1311..1524 100 -> Plus
3R 10816996..10817490 1525..2019 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:53:47 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6641013..6641156 1..144 100 -> Plus
arm_3R 6641224..6642389 145..1310 100 -> Plus
arm_3R 6642446..6642659 1311..1524 100 -> Plus
arm_3R 6642718..6643212 1525..2019 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:45:52 Download gff for LD09343.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10556333..10557498 145..1310 100 -> Plus
3R 10557555..10557768 1311..1524 100 -> Plus
3R 10557827..10558321 1525..2019 100   Plus
3R 10556122..10556265 1..144 100 -> Plus

LD09343.pep Sequence

Translation from 90 to 1640

> LD09343.pep
MDASVVENAPNQKEVDGKMATTEESEKPSNSIGLLPIMIFLAATVATAVV
VEVLPHASRVFPWKLADSSADQLQPPPTYAIFGRSPTEEHLVHVVNVLHK
FGYKRVGVNDSWNLLWAHDYPFLSFANLKNLGQHQVVNHYPGCGYLTNKV
DLCTTQLPFLPRAFRLPAEREEFLDYARENPQALFVQKHNEHRHIKVRAP
ADIAFGSNDSFVQEFVQRPYLVDGHKFDIGVYVVITSVNPLRVYIYTGDV
LFRYCPVKYHPFDAENVDKYIVGDDYLPTWEVPSLRKYYNRFGGSMRTVF
EAYVRDQGKDPAQIWPQVEHIVRTTIAAKEKDIVNILRSYRTHNFFDLMR
FDLFIDEDLKVFLMEANMSPNLSSAHFKPNSLLYEQVLYSVFNLVGIRPL
TSTSGALLGESSEMITTDKNLSTDLNKCAAHDCDKSCNKEECDLCLQCLS
GSEYKMLQQAHQEHLHRVDMKRIFPKPIRDPMRFDVMAETANMSKKNAWM
TRWFHNKCQFDAVWCN*

LD09343.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17905-PA 515 GF17905-PA 1..515 1..516 2221 76.8 Plus
Dana\GF18720-PA 737 GF18720-PA 179..467 101..372 257 26.6 Plus
Dana\GF11726-PA 862 GF11726-PA 148..445 94..374 251 25.4 Plus
Dana\GF15840-PA 1097 GF15840-PA 619..923 97..378 227 25.7 Plus
Dana\GF15040-PA 1003 GF15040-PA 481..779 94..374 222 24.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17716-PA 516 GG17716-PA 1..516 1..516 2592 93.2 Plus
Dere\GG12126-PA 692 GG12126-PA 152..491 87..419 263 25.1 Plus
Dere\GG21987-PA 869 GG21987-PA 146..443 94..374 257 25.7 Plus
Dere\GG23690-PA 1068 GG23690-PA 580..875 97..374 228 25.8 Plus
Dere\GG24974-PA 988 GG24974-PA 468..766 94..374 221 24.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18061-PA 445 GH18061-PA 7..444 78..515 1807 73.3 Plus
Dgri\GH16662-PA 706 GH16662-PA 136..449 64..372 265 26 Plus
Dgri\GH10972-PA 1078 GH10972-PA 606..1016 97..475 238 24.8 Plus
Dgri\GH23006-PA 831 GH23006-PA 147..442 94..372 236 25.7 Plus
Dgri\GH22556-PA 835 GH22556-PA 147..442 94..372 235 25.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
TTLL15-PA 516 CG4089-PA 1..516 1..516 2770 100 Plus
TTLL6B-PA 720 CG5987-PA 166..452 102..371 265 27.1 Plus
TTLL6A-PC 867 CG16716-PC 143..440 94..374 256 25.2 Plus
TTLL4A-PM 827 CG16833-PM 339..634 97..374 230 26.1 Plus
TTLL4A-PK 827 CG16833-PK 339..634 97..374 230 26.1 Plus
TTLL4A-PF 828 CG16833-PF 339..634 97..374 230 26.1 Plus
TTLL4A-PE 828 CG16833-PE 339..634 97..374 230 26.1 Plus
TTLL4A-PN 1070 CG16833-PN 582..877 97..374 230 26.1 Plus
TTLL4A-PL 1070 CG16833-PL 582..877 97..374 230 26.1 Plus
TTLL4A-PI 1070 CG16833-PI 582..877 97..374 230 26.1 Plus
TTLL4A-PH 1071 CG16833-PH 582..877 97..374 230 26.1 Plus
TTLL4A-PG 1071 CG16833-PG 582..877 97..374 230 26.1 Plus
TTLL4A-PD 1071 CG16833-PD 582..877 97..374 230 26.1 Plus
TTLL5-PB 917 CG31108-PB 242..624 107..475 222 24.2 Plus
TTLL5-PA 917 CG31108-PA 242..624 107..475 222 24.2 Plus
TTLL4B-PA 982 CG3964-PA 469..767 94..374 219 24.7 Plus
TTLL4B-PC 989 CG3964-PC 469..767 94..374 219 24.7 Plus
TTLL4B-PB 989 CG3964-PB 469..767 94..374 219 24.7 Plus
TTLL1B-PA 487 CG32238-PA 87..423 94..387 196 21.7 Plus
TTLL1A-PA 496 CG8918-PA 67..391 94..374 175 21.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23739-PA 479 GI23739-PA 1..478 38..515 1867 70.1 Plus
Dmoj\GI22299-PA 714 GI22299-PA 145..570 64..485 271 25.1 Plus
Dmoj\GI18156-PA 818 GI18156-PA 332..627 97..374 228 26.3 Plus
Dmoj\GI21073-PA 885 GI21073-PA 148..450 90..375 220 23.2 Plus
Dmoj\GI23779-PA 859 GI23779-PA 154..604 87..515 215 24.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21918-PA 516 GL21918-PA 16..515 26..515 2014 73.6 Plus
Dper\GL10350-PA 888 GL10350-PA 156..457 90..374 248 25.8 Plus
Dper\GL19014-PA 1052 GL19014-PA 538..857 84..374 230 26.2 Plus
Dper\GL21939-PA 929 GL21939-PA 223..524 87..373 223 25.4 Plus
Dper\GL18685-PA 977 GL18685-PA 457..752 94..374 220 24.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30168-PA 220 GA30168-PA 90..219 386..515 450 60 Plus
Dpse\GA19278-PA 694 GA19278-PA 140..539 79..477 279 25.3 Plus
Dpse\GA14100-PA 886 GA14100-PA 157..458 90..374 249 25.8 Plus
Dpse\GA16014-PA 929 GA16014-PA 223..524 87..373 224 25.4 Plus
Dpse\GA17808-PA 983 GA17808-PA 460..758 94..374 224 24.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23899-PA 513 GM23899-PA 1..506 1..506 2579 94.9 Plus
Dsec\GM10118-PA 718 GM10118-PA 165..455 101..374 260 26.8 Plus
Dsec\GM21973-PA 865 GM21973-PA 141..438 94..374 255 25.7 Plus
Dsec\GM18785-PA 559 GM18785-PA 71..366 97..374 232 26.1 Plus
Dsec\GM18444-PA 986 GM18444-PA 466..764 94..374 221 24.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18711-PA 537 GD18711-PA 1..460 1..478 2430 94.4 Plus
Dsim\GD15082-PA 698 GD15082-PA 165..455 101..374 261 26.8 Plus
Dsim\GD11467-PA 750 GD11467-PA 15..312 94..374 256 25.7 Plus
Dsim\GD23261-PA 986 GD23261-PA 466..764 94..374 221 24.7 Plus
Dsim\GD23748-PA 1066 GD23748-PA 592..872 112..374 219 26.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10585-PA 503 GJ10585-PA 2..502 25..515 1869 68.7 Plus
Dvir\GJ10485-PA 716 GJ10485-PA 146..459 64..372 257 26 Plus
Dvir\GJ14582-PA 1058 GJ14582-PA 566..861 97..374 231 25.8 Plus
Dvir\GJ20920-PA 876 GJ20920-PA 143..539 94..475 231 24.2 Plus
Dvir\GJ23611-PA 901 GJ23611-PA 196..497 87..373 212 25.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13901-PA 510 GK13901-PA 1..509 1..515 1878 65.6 Plus
Dwil\GK22594-PA 719 GK22594-PA 171..459 101..372 252 26.6 Plus
Dwil\GK15880-PA 721 GK15880-PA 63..358 94..372 243 25.3 Plus
Dwil\GK15248-PA 861 GK15248-PA 369..779 97..475 233 25.3 Plus
Dwil\GK15485-PA 1039 GK15485-PA 508..806 94..374 215 24 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26051-PA 516 GE26051-PA 1..516 1..516 2571 92.1 Plus
Dyak\GE10574-PA 720 GE10574-PA 165..455 101..374 263 26.5 Plus
Dyak\GE12065-PA 858 GE12065-PA 143..440 94..374 256 25.7 Plus
Dyak\GE18502-PA 1068 GE18502-PA 580..875 97..374 229 25.8 Plus
Dyak\GE18264-PA 990 GE18264-PA 470..768 94..374 221 24.7 Plus

LD09343.hyp Sequence

Translation from 90 to 1640

> LD09343.hyp
MDASVVENAPNQKEVDGKMATTEESEKPSNSIGLLPIMIFLAATVATAVV
VEVLPHASRVFPWKLADSSADQLQPPPTYAIFGRSPTEEHLVHVVNVLHK
FGYKRVGVNDSWNLLWAHDYPFLSFANLKNLGQHQVVNHYPGCGYLTNKV
DLCTTQLPFLPRAFRLPAEREEFLDYARENPQALFVQKHNEHRHIKVRAP
ADIAFGSNDSFVQEFVQRPYLVDGHKFDIGVYVVITSVNPLRVYIYTGDV
LFRYCPVKYHPFDAENVDKYIVGDDYLPTWEVPSLRKYYNRFGGSMRTVF
EAYVRDQGKDPAQIWPQVEHIVRTTIAAKEKDIVNILRSYRTHNFFDLMR
FDLFIDEDLKVFLMEANMSPNLSSAHFKPNSLLYEQVLYSVFNLVGIRPL
TSTSGALLGESSEMITTDKNLSTDLNKCAAHDCDKSCNKEECDLCLQCLS
GSEYKMLQQAHQEHLHRVDMKRIFPKPIRDPMRFDVMAETANMSKKNAWM
TRWFHNKCQFDAVWCN*

LD09343.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-PA 516 CG4089-PA 1..516 1..516 2770 100 Plus
CG5987-PA 720 CG5987-PA 166..452 102..371 265 27.1 Plus
CG16716-PC 867 CG16716-PC 143..440 94..374 256 25.2 Plus
CG16833-PM 827 CG16833-PM 339..634 97..374 230 26.1 Plus
CG16833-PK 827 CG16833-PK 339..634 97..374 230 26.1 Plus