Clone LD09394 Report

Search the DGRC for LD09394

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:93
Well:94
Vector:pBS SK-
Associated Gene/TranscriptMcm10-RA
Protein status:LD09394.pep: gold
Sequenced Size:2783

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9241 2007-09-25 DGC5 pick
Mcm10 2008-04-29 Release 5.5 accounting
Mcm10 2008-04-29 Picked prior to 5.5
Mcm10 2008-08-15 Release 5.9 accounting
Mcm10 2008-12-18 5.12 accounting

Clone Sequence Records

LD09394.complete Sequence

2783 bp assembled on 2007-12-12

GenBank Submission: BT031323

> LD09394.complete
AAAACACGAGAACACGTGAAAATACAAATCTACCCAAATGAAATGGGTCC
TGCTCAGAAATCCGGAACAGATATTAGTATCGATGATGAGGAGGAAATAC
TGGCTCTGGAAAAACTACTGGGTGCAGCAGAAAACGAAAATACAAAATCT
GCAGAGTCAGAAAAAGCAAAACCCACCGCACCCATTTTGGTGCCAAAACT
ACGAGAAGACAACAGTTTTGCTAATGCCTTCACCTTCGAGAAGATCGTGA
AACCGGAAAAGCAGAAGAATGCTGCTATCATTAAGGAACCAGAGCTGGAC
TCGTCCGACGACGAGGAGGTAAAGAACTTCCTGGAACGAAAGTACAATGA
GTACGGCAGTGATATAAACAAGAGACTGAAGCAGCAGCAGGAGAACGCCT
ACGAGTCCAAGGTGGCGAGGGAGGTGGATCAGGAGCTTAAGAAGTCTATC
CACGTGGTTACATCCACCCCGCAACCCCTGAAAAATCCGCATAATCCTAT
TAAACGGCAATCGGCGGTGAGCACCACGTTTCAACGTCCTCCGCCAGTCG
CTGCCGCCGTGGCATCTACATCCCAGTCAAGTGCTCCCGTATCTGCTGTT
TTTACGGATCCAGTCTTCGGACTGCGCATGATCAATCCGCTAGTCTCCAG
CTCACTGCTGCAGGAGCGCATGACGGGCAGGAAACCTGTGCCCTTCTCAG
GCGTTGCGTATCACATCGAGCGAGGCGATTTGGCCAAAGATTGGGTCATT
GCTGGCGCGCTGGTTTCCAAAAATCCTGTAAAAAACACCAAGAAGGGTGA
TCCCTACTCCACGTGGAAACTATCCGATCTACGGGGAGAGGTTAAAACGA
TCTCACTTTTCCTTTTTAAAGAGGCCCACAAATCCCTGTGGAAAACAGCG
GAGGGTCTGTGCTTGGCTGTGTTGAATCCAACTATTTTCGAGAGGAGAGC
GGGAAGCTCCGATGTGGCCTGCCTATCCATCGATAGCTCCCAGAAAGTCA
TGATCCTGGGTCAATCCAAAGATTTGGGCACATGTCGGGCCACCAAAAAA
AATGGGGACAAGTGCACTTCGGTGGTTAACCTAACCGACTGTGATTATTG
CATTTTTCATGTAAAGCAGGAATATGGCAAGATGTCCCGACGTTCTGAAC
TGCAATCGGCGACCGCAGGTCGTGGTATCAATGAACTAAGAAACAAGGTT
TTGGGCAAAAACGAGGTATTTTACGGCGGCCAAACATTTACTGCAGTTCC
CGCAAGAAAAAGTGCCAAGTTAATCACCAAGGAACGTGATCGTCTGAGTA
TGCTGGCTGGCTATGATGTTTCCCCCTTCGCCCATACCGCTAACCACACC
TCAAAGCCCAAAACAGCCGAACCCACTAAAATTCCATATGCAGAACGTGG
CGGTCCTGTTTCCCGTTTGGCTGGTGGTGTGGAAGCGTCTAGGAAACAGA
GAGTCCAAGATCTAGAGCGGTTGCGTCTGCTTAAAGAGGAAAATGAGCGC
TTTGAAAAAAAGAAGCAGGCGGAGGGCCATGTCTTGGGAAGTGATAACAA
AAAAGAATCTGAAGCAGGCACACCCGCTGTCAGTATGCCCACTACACCTG
TTCCAGATAAATTCAAAAATCGAGGCTTCTCCTTTGATGCCAGTTTAACG
CCCAAGCTTTCCGGTAGCGAGAACTTTTCCTTTGAAATCAATGTAGGATC
TCGCCAGGCACAAAATGCTAAGCTGAAAGCAGCTGCCCTGCTGAAGAAGA
AGCCACTGGAGAAGATCAACCCCAACTCCACACGAGGCAGTGAAAGTGGG
AAGAGAAGAGCCATCGATGAACTCAACGAGAAGTTCTCTAGCAGCGCCAA
GCGACAAAAAATTGATGAGGACGATCGGGAGTTAATGCGCAAATCAAGAA
TCGAAAAAATAATGGCAGCCACCTCATCGCATACGAATCTCGTGGAAATG
CGAGAGCGCGAAGCGCAGGAAGAGTACTTTAACAAGCTTGAACGCAAGGA
AGCGATGGAAGAGAAGATGCTGACCACATACAAGATGCCATGCAAGGCCG
TCATCTGCCAGGTGTGCAAGTACACAGCCTTTTCCGCTTCCGATCGCTGC
AAGGAGCAGAAGCACCCCTTAAAGGTGGTCGATGCTGAAAAGCGATTCTT
TCAGTGCAAAGACTGCGGAAATCGAACTACTACCGTATTCAAGTTGCCCA
AACAGAGCTGTAAGAATTGCAAGGGGTCGCGATGGCAAAGGACGGCTATG
ATACGGGAGAAAAAGATACTGACTGGTAGAGAAACTCTATCCGTGAGAGG
AGACGAGGAAACCTTTATGGGCTGCCTAGCAGGCAGTGCTAATCTCAACT
TGCTGGTACCCGATGAAGAGTGATGCCCCAATTGGCCGCTATCTGTTATA
TTTGGTTTATTTTATTTTATATTATTTCAAATAATTTTTAAAAGTTAATT
TAAACATATGCAGTAGATGCAAGTATTTACATTCATTAAAGTCATAAAAG
TCATCGATAAATAAGTACATTGGTTCGAATACCTAAATATCTAGAGTGCC
TGTGAGATTGTTTAAGATGTACCAGATGTACTCAATGATTAATAATGAAG
GTTACTTATGATTGTTTAGCTTATGGCGTAAATAAATTGAAACTTATATT
ATGACTGCTATTACATTAAATGGACATTATAAATCAACCTAGCTTACTTT
AGCAGAGTTTTACAATCTTAAATTGAAATAAATATCCAAATACAGAAAAC
CCCTTTTGAAGCACAAAAAAAAAAAAAAAAAAA

LD09394.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm10-RA 2946 Mcm10-RA 112..2878 1..2767 13835 100 Plus
Ret-RA 4726 Ret-RA 4305..4726 2767..2346 2110 100 Minus
Ret-RB 4819 Ret-RB 4398..4819 2767..2346 2110 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21179756..21181316 1204..2764 7790 99.9 Plus
chr2L 23010047 chr2L 21178493..21179697 1..1205 6025 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21181252..21182815 1204..2767 7820 100 Plus
2L 23513712 2L 21179989..21181193 1..1205 6025 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21181252..21182815 1204..2767 7820 100 Plus
2L 23513712 2L 21179989..21181193 1..1205 6025 100 Plus
Blast to na_te.dros performed on 2019-03-15 17:30:21 has no hits.

LD09394.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:31:34 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21178493..21179696 1..1204 100 -> Plus
chr2L 21179757..21181316 1205..2764 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:42:23 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm10-RA 1..2331 43..2373 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:03:47 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm10-RA 1..2331 43..2373 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:38:05 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm10-RA 1..2331 43..2373 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:49:21 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm10-RA 1..2331 43..2373 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:39:17 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm10-RA 1..2331 43..2373 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:54:57 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm10-RA 49..2793 1..2745 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:03:46 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm10-RA 49..2812 1..2764 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:38:05 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm10-RA 57..2820 1..2764 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:49:22 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm10-RA 49..2793 1..2745 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:39:17 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm10-RA 57..2820 1..2764 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:31:34 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21179989..21181192 1..1204 100 -> Plus
2L 21181253..21182812 1205..2764 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:31:34 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21179989..21181192 1..1204 100 -> Plus
2L 21181253..21182812 1205..2764 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:31:34 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21179989..21181192 1..1204 100 -> Plus
2L 21181253..21182812 1205..2764 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:38:05 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21179989..21181192 1..1204 100 -> Plus
arm_2L 21181253..21182812 1205..2764 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:55:48 Download gff for LD09394.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21179989..21181192 1..1204 100 -> Plus
2L 21181253..21182812 1205..2764 100   Plus

LD09394.hyp Sequence

Translation from 0 to 2372

> LD09394.hyp
KTREHVKIQIYPNEMGPAQKSGTDISIDDEEEILALEKLLGAAENENTKS
AESEKAKPTAPILVPKLREDNSFANAFTFEKIVKPEKQKNAAIIKEPELD
SSDDEEVKNFLERKYNEYGSDINKRLKQQQENAYESKVAREVDQELKKSI
HVVTSTPQPLKNPHNPIKRQSAVSTTFQRPPPVAAAVASTSQSSAPVSAV
FTDPVFGLRMINPLVSSSLLQERMTGRKPVPFSGVAYHIERGDLAKDWVI
AGALVSKNPVKNTKKGDPYSTWKLSDLRGEVKTISLFLFKEAHKSLWKTA
EGLCLAVLNPTIFERRAGSSDVACLSIDSSQKVMILGQSKDLGTCRATKK
NGDKCTSVVNLTDCDYCIFHVKQEYGKMSRRSELQSATAGRGINELRNKV
LGKNEVFYGGQTFTAVPARKSAKLITKERDRLSMLAGYDVSPFAHTANHT
SKPKTAEPTKIPYAERGGPVSRLAGGVEASRKQRVQDLERLRLLKEENER
FEKKKQAEGHVLGSDNKKESEAGTPAVSMPTTPVPDKFKNRGFSFDASLT
PKLSGSENFSFEINVGSRQAQNAKLKAAALLKKKPLEKINPNSTRGSESG
KRRAIDELNEKFSSSAKRQKIDEDDRELMRKSRIEKIMAATSSHTNLVEM
REREAQEEYFNKLERKEAMEEKMLTTYKMPCKAVICQVCKYTAFSASDRC
KEQKHPLKVVDAEKRFFQCKDCGNRTTTVFKLPKQSCKNCKGSRWQRTAM
IREKKILTGRETLSVRGDEETFMGCLAGSANLNLLVPDEE*

LD09394.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm10-PA 776 CG9241-PA 1..776 15..790 3970 100 Plus

LD09394.pep Sequence

Translation from 42 to 2372

> LD09394.pep
MGPAQKSGTDISIDDEEEILALEKLLGAAENENTKSAESEKAKPTAPILV
PKLREDNSFANAFTFEKIVKPEKQKNAAIIKEPELDSSDDEEVKNFLERK
YNEYGSDINKRLKQQQENAYESKVAREVDQELKKSIHVVTSTPQPLKNPH
NPIKRQSAVSTTFQRPPPVAAAVASTSQSSAPVSAVFTDPVFGLRMINPL
VSSSLLQERMTGRKPVPFSGVAYHIERGDLAKDWVIAGALVSKNPVKNTK
KGDPYSTWKLSDLRGEVKTISLFLFKEAHKSLWKTAEGLCLAVLNPTIFE
RRAGSSDVACLSIDSSQKVMILGQSKDLGTCRATKKNGDKCTSVVNLTDC
DYCIFHVKQEYGKMSRRSELQSATAGRGINELRNKVLGKNEVFYGGQTFT
AVPARKSAKLITKERDRLSMLAGYDVSPFAHTANHTSKPKTAEPTKIPYA
ERGGPVSRLAGGVEASRKQRVQDLERLRLLKEENERFEKKKQAEGHVLGS
DNKKESEAGTPAVSMPTTPVPDKFKNRGFSFDASLTPKLSGSENFSFEIN
VGSRQAQNAKLKAAALLKKKPLEKINPNSTRGSESGKRRAIDELNEKFSS
SAKRQKIDEDDRELMRKSRIEKIMAATSSHTNLVEMREREAQEEYFNKLE
RKEAMEEKMLTTYKMPCKAVICQVCKYTAFSASDRCKEQKHPLKVVDAEK
RFFQCKDCGNRTTTVFKLPKQSCKNCKGSRWQRTAMIREKKILTGRETLS
VRGDEETFMGCLAGSANLNLLVPDEE*

LD09394.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14745-PA 775 GF14745-PA 1..775 1..776 3383 83.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21288-PA 779 GG21288-PA 1..779 1..776 3733 92.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11446-PA 787 GH11446-PA 1..786 1..776 3171 74.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm10-PA 776 CG9241-PA 1..776 1..776 3970 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21895-PA 789 GI21895-PA 1..789 1..776 3011 75.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25897-PA 775 GL25897-PA 1..775 1..776 3221 78 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21636-PA 775 GA21636-PA 1..775 1..776 3223 78.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23399-PA 773 GM23399-PA 1..773 1..776 3814 95.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24309-PA 775 GD24309-PA 1..775 1..776 3842 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17814-PA 784 GJ17814-PA 1..784 1..776 3093 75.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21055-PA 775 GK21055-PA 1..775 1..776 3062 76.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12904-PA 779 GE12904-PA 1..779 1..776 3646 91.3 Plus