Clone LD09414 Report

Search the DGRC for LD09414

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:94
Well:14
Vector:pBS SK-
Associated Gene/TranscriptCG7265-RA
Protein status:LD09414.pep: gold
Preliminary Size:1636
Sequenced Size:1526

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7265 2001-01-01 Release 2 assignment
CG7265 2001-11-09 Blastp of sequenced clone
CG7265 2003-01-01 Sim4 clustering to Release 3
CG7265 2008-04-29 Release 5.5 accounting
CG7265 2008-08-15 Release 5.9 accounting
CG7265 2008-12-18 5.12 accounting

Clone Sequence Records

LD09414.complete Sequence

1526 bp (1526 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069384

> LD09414.complete
TTATCTTGACTTTGTTTATTTTGCTGCATGCATTTGATACTTTTTTACTG
GACAAAGGAATCTTGAGTAGAAAGTGATTTGAAATGACCTCGTCCGAAAC
ATCAGCATCGGCTTTCTCGAGCTCGGACACAGCCGCCCTGGAGCGTCAGG
CGGAAGTGGAGCAGCCGGTGACCTTGGAACAGATCTGGAACGAAAACCAC
CGGCGATCGAGCGTAGATTGGATTCGCAAAAGTGGTTACAAAAGGGTTTG
CCTGCAATTCCCAGACGACTATCTGCCCCACAGCAATGCAATTAGTGTGG
GCCTGAAGGAGCTACTTGCGCCGGAGGACGTGAAAGTCTTCATCCTGGCG
GACACCACATACGGAAGCTGCTGCGTGGACGAGATTGCGGCTGCCCATGT
GGATGCAGACAGTGTGATTCACTTCGGAAACGCATGTCGCAGTAGGGCCG
CCCGCCTGCCGGTACTTTACCTTTATCCAGAGTTGCCGCTGGATGTGAAT
GTTCTCCTGAGCAAGCTGCAAGGTCTGCGCGCGGAGAGCATAGATCGACA
GGTATGCGTGTACCTGGACATTGGGTACCAGCATGTGTACGGGGAAAAGC
TAAAGAAGCAGCTGTCCGAGATCCTGGAGCCCAAAGAACTGCTGCTGGAA
CTGTTTCCGCCCATCGAGGCAGAATCAACGACAACTAGGGAGACCACGAA
CCTTGAGAGGATTTGTATTTTCATAGGCGCCGATAACCAGCGATTCGCTA
ATCTCTCTCTGACCGCTCCAGCTGCCGTGCAATGGCACATCTACGATGGA
TCATCTGACAGTCTCAGCTCAAAAAATCCCCTCACGGCTCAGTTCATCCG
CCGTCGCTACTTCCACATCGAAAAGTGTAAGGATGCACAAACACTGGGAC
TCATTGTGGCCACTCTTTCGGCTGAAGGTTACTTAGATGTGGTGACGCGA
CTGCAAACAATGGCGAAGGGCAGAGGCATTAAGACGCAGCTTATTTCCGT
GGGCAGGATTAACCCAGCCAAACTCGCTAACTTCCTGGAAATCGATTGTT
TTGTCCTGATCGGTTGCCCGTTCAATAATATGTACGACTCCAAAGAGTAC
TATAAGCCCATTGTCTCTGTCTTCGAGGCAGAGATGGCCTTGAATCCCGC
CTGGCACATGAGATACCCCGAAGCTTATGTTACGGATTTCAAACAACTTC
TGCCGGAAGGACGCAGCTTCTTGCCTTTTGATGCGGCAGATATACCAGAG
AACGACGTCAGCTTGGTGAGTGGAAGGCTACGAGGAGCGGTCAACGATTC
CCTGGAAACAGGTGGAGATCCCGCCTCGCTTGCTCTGGCTACACAAGCCA
AAATGGCTCTCATGACGACGGATACCGGGCTCTCCTTCGAGGATCGCACC
TGGCAGGGATTGGATCCTGCCCTTGGACAGACGGAGCCCGCCAAGTTGCA
GCAGGGACTCAGTGGTATACCCATTAACTATTCACACCAATAAAGGCCTG
AGAAACTTAAAAAAAAAAAAAAAAAA

LD09414.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7265-RA 1557 CG7265-RA 48..1556 1..1509 7545 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10717039..10718302 1508..245 6320 100 Minus
chr3R 27901430 chr3R 10718353..10718599 247..1 1235 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14892391..14893655 1509..245 6325 100 Minus
3R 32079331 3R 14893706..14893952 247..1 1235 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14633222..14634486 1509..245 6325 100 Minus
3R 31820162 3R 14634537..14634783 247..1 1235 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:18:58 has no hits.

LD09414.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:19:54 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10717039..10718301 246..1508 100 <- Minus
chr3R 10718355..10718599 1..245 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:42:25 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
CG7265-RA 1..1410 84..1493 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:07 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
CG7265-RA 1..1410 84..1493 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:51:28 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
CG7265-RA 1..1410 84..1493 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:45 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
CG7265-RA 1..1410 84..1493 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:50 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
CG7265-RA 1..1410 84..1493 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:55 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
CG7265-RA 2..1509 1..1508 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:07 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
CG7265-RA 2..1509 1..1508 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:28 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
CG7265-RA 2..1509 1..1508 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:45 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
CG7265-RA 2..1509 1..1508 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:50 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
CG7265-RA 3..1510 1..1508 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:19:54 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14892392..14893654 246..1508 100 <- Minus
3R 14893708..14893952 1..245 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:19:54 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14892392..14893654 246..1508 100 <- Minus
3R 14893708..14893952 1..245 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:19:54 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14892392..14893654 246..1508 100 <- Minus
3R 14893708..14893952 1..245 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:28 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10718114..10719376 246..1508 100 <- Minus
arm_3R 10719430..10719674 1..245 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:04 Download gff for LD09414.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14633223..14634485 246..1508 100 <- Minus
3R 14634539..14634783 1..245 100   Minus

LD09414.pep Sequence

Translation from 83 to 1492

> LD09414.pep
MTSSETSASAFSSSDTAALERQAEVEQPVTLEQIWNENHRRSSVDWIRKS
GYKRVCLQFPDDYLPHSNAISVGLKELLAPEDVKVFILADTTYGSCCVDE
IAAAHVDADSVIHFGNACRSRAARLPVLYLYPELPLDVNVLLSKLQGLRA
ESIDRQVCVYLDIGYQHVYGEKLKKQLSEILEPKELLLELFPPIEAESTT
TRETTNLERICIFIGADNQRFANLSLTAPAAVQWHIYDGSSDSLSSKNPL
TAQFIRRRYFHIEKCKDAQTLGLIVATLSAEGYLDVVTRLQTMAKGRGIK
TQLISVGRINPAKLANFLEIDCFVLIGCPFNNMYDSKEYYKPIVSVFEAE
MALNPAWHMRYPEAYVTDFKQLLPEGRSFLPFDAADIPENDVSLVSGRLR
GAVNDSLETGGDPASLALATQAKMALMTTDTGLSFEDRTWQGLDPALGQT
EPAKLQQGLSGIPINYSHQ*

LD09414.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18124-PA 472 GF18124-PA 1..472 1..469 1994 78.4 Plus
Dana\GF24524-PA 456 GF24524-PA 61..398 36..369 244 25.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21012-PA 468 GG21012-PA 1..468 1..469 2330 95.5 Plus
Dere\GG13898-PA 454 GG13898-PA 59..396 36..369 250 25.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19238-PA 482 GH19238-PA 2..481 4..468 1836 72.2 Plus
Dgri\GH15073-PA 461 GH15073-PA 66..383 36..354 249 25.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7265-PA 469 CG7265-PA 1..469 1..469 2419 100 Plus
Dph1-PC 454 CG11652-PC 59..396 36..369 254 25.1 Plus
Dph1-PB 454 CG11652-PB 59..396 36..369 254 25.1 Plus
Dph1-PA 454 CG11652-PA 59..396 36..369 254 25.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24272-PA 475 GI24272-PA 2..474 7..468 1843 72.5 Plus
Dmoj\GI13721-PA 458 GI13721-PA 63..380 36..354 241 24.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20602-PA 177 GL20602-PA 1..177 293..469 863 88.1 Plus
Dper\GL23663-PA 238 GL23663-PA 22..218 19..203 658 64.5 Plus
Dper\GL16342-PA 465 GL16342-PA 70..407 36..369 242 25.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20222-PA 481 GA20222-PA 22..481 19..469 1885 75.7 Plus
Dpse\GA11120-PA 464 GA11120-PA 69..406 36..369 242 25.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25818-PA 469 GM25818-PA 1..469 1..469 2462 97.2 Plus
Dsec\GM24722-PA 454 GM24722-PA 59..396 36..369 246 25.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20394-PA 469 GD20394-PA 1..469 1..469 2469 97.7 Plus
Dsim\GD12784-PA 454 GD12784-PA 59..396 36..369 248 25.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10845-PA 478 GJ10845-PA 2..477 7..468 1826 72.4 Plus
Dvir\GJ14065-PA 455 GJ14065-PA 60..377 36..354 261 25.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13830-PA 476 GK13830-PA 1..476 1..469 1798 70.7 Plus
Dwil\GK12405-PA 464 GK12405-PA 69..386 36..354 242 24.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26423-PA 469 GE26423-PA 1..469 1..469 2347 95.7 Plus
Dyak\GE20188-PA 454 GE20188-PA 59..396 36..369 250 25.6 Plus

LD09414.hyp Sequence

Translation from 83 to 1492

> LD09414.hyp
MTSSETSASAFSSSDTAALERQAEVEQPVTLEQIWNENHRRSSVDWIRKS
GYKRVCLQFPDDYLPHSNAISVGLKELLAPEDVKVFILADTTYGSCCVDE
IAAAHVDADSVIHFGNACRSRAARLPVLYLYPELPLDVNVLLSKLQGLRA
ESIDRQVCVYLDIGYQHVYGEKLKKQLSEILEPKELLLELFPPIEAESTT
TRETTNLERICIFIGADNQRFANLSLTAPAAVQWHIYDGSSDSLSSKNPL
TAQFIRRRYFHIEKCKDAQTLGLIVATLSAEGYLDVVTRLQTMAKGRGIK
TQLISVGRINPAKLANFLEIDCFVLIGCPFNNMYDSKEYYKPIVSVFEAE
MALNPAWHMRYPEAYVTDFKQLLPEGRSFLPFDAADIPENDVSLVSGRLR
GAVNDSLETGGDPASLALATQAKMALMTTDTGLSFEDRTWQGLDPALGQT
EPAKLQQGLSGIPINYSHQ*

LD09414.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7265-PA 469 CG7265-PA 1..469 1..469 2419 100 Plus
CG11652-PC 454 CG11652-PC 59..396 36..369 254 25.1 Plus
CG11652-PB 454 CG11652-PB 59..396 36..369 254 25.1 Plus
CG11652-PA 454 CG11652-PA 59..396 36..369 254 25.1 Plus