Clone LD09531 Report

Search the DGRC for LD09531

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:95
Well:31
Vector:pBS SK-
Associated Gene/TranscriptLarp7-RA
Protein status:LD09531.pep: gold
Preliminary Size:2035
Sequenced Size:2050

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12058 2001-01-01 Release 2 assignment
CG12058 2001-10-10 Blastp of sequenced clone
CG12058 2003-01-01 Sim4 clustering to Release 3
mxc 2008-04-29 Release 5.5 accounting
mxc 2008-08-15 Release 5.9 accounting
mxc 2008-12-18 5.12 accounting

Clone Sequence Records

LD09531.complete Sequence

2050 bp (2050 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061107

> LD09531.complete
ATTTTATTCGAGTGACTTAGATTACTGGTTAACTGGCACTCAATGGCTGC
CAAGAGTATCGAGAAGGAGAAGGGCGAGGGTCAGGAGCCCGCGACATCAG
CGGAGAAACCCGATCCAGCCGCACCCACTGAACCAGCTGAGGAAAATTCC
AAAGAACCGGCGCCGGAAGACGCATCGCCGGATAAAAAGGATGGTGGACG
CAAAAGGAAGAGGCATTTGTTCAATTCGATTCGCGGTCAAATGGAATTCT
ACTTCGGTGACGCCAACTTGAGCAAGGATCGCTTCCTTCGGCGCTACGTA
GAGCAGGATCCATATGTACCATTGGAAATCTTTCTCACTTTCAATAAGAT
AAAGACGCTCACCCAGGATGTGCAGCAGATAGCCAAGGCACTAAGCAACT
CCCAGCTTCTGGAGCTGGATGAGACCGAACTAAAGGTCAAGCGACGTACC
AAGCTACCAGATCAGCGCGATGTCAACGACAAAACCTTGTATGTAGAGGC
CCTGCCTGCAAATGCCACTCACGATTGGCTGAAGGAGGTATTCAGCCGCT
ACGGACCGGTGGCCTACGTGTCCCTGCCCCACTATCCGGGCACTAAGAAG
ATCAAGGAATTTGCCTTTATCGAGTTCGAAAAGAGCGGGTCCTTGGAGAA
AGCTGTGAAGGCTTTTGCCCAGATACAGGGCGTTTTGTCCGTAGAAACCG
ATCCCAGTGATCTGGCCAGTGTGCGCTCCTTTCAGCAGCAGCAGCAGATA
CAACAGAAAGCGGAGCAGCCGCAGTCAGAGGCTGAACAGGTTGAGTTGCC
AAAGCGAAATCTAAAAAGGGAGGCCACCGACAAGGATCGCGAGGAGATAC
ACGAGGTGAAACGGGTTAAGTTGGAGGAGGGCCAGCCTAGCGAGACCTCT
ACAGCTGGGGAAACAGCGAGTGAAACGGATGCAGAGGGCACAGCCGAAGC
CTCCGAGCAGGAGGACAAAACAGAGGCAACCGATGGCGATGAAGCTGCCA
AAAAGCGCCGTCGCAAGCGCAAGAAGAAGGCGATCGTGGACAAGCCAAAC
ATTGAGCCCAGTGCCCTGGAGCTCAAGGTGCTACCCAAGACTAGTTGGAG
CAGTATGCGCAATAAGTACTTGAATCTACAGCGTCGCATCGTCAGTGAGG
CAAAGAGCAAGCTGTGGCGAGAAAATCACCCACAAAATCAGCAGCACCCT
CACCACCAGCAGACCAGTCATCCAAACCATCCGAAACCTTCACAGCTGCC
CGAGGCAGTTAAAGAGGAGGAAACCGGAGGCGAGGTCCCTAGCGATGGCG
GTGAAGGTGCCGTAGAAGCAGCGCCTGTGCCAGCCAAGCGTCGCAAGGCG
GTGCACAAGATGAACATGAATTTCTACGGCGCCGGCGGCGTGGAATCCAC
CAAATCCGAAGAACCTTCGCAGGAACGCACGCCGCTCTTTAAATACGAGC
CCGGGCTGATTGTGGAGTGCTCCCTGCTAAAACCATGCACCAATGTTAAA
GAATTTAAGGCTGAAATGCGCCAATATCCGGATATTAAATATGTGGATAT
TAAGGAGGGCGACCAAGTGGCCCTACTACGTTTGGGCACGCCTGCCGCAG
CCGAGGAACTGCTACGCCAGGTCAACTGCTCCGAGAGGCAGCTGAAAGTG
CTCTCTGGCCAGCAGGAGACGCTCTATTGGCGAAAAATCGAGCAGGATCG
CGAGGCGAAACTCTCGAAAAAGGTGCGCGTGCAGCAAAAACGCGGTCGCG
AGAAAGTGGGCAAAATGCTGGGCAAGCACATTAAGTTTGATGATGGCGAT
GATGAAGTGCAGGCGGCCGCCATGGACTGAGTCACTTTCAGTTGAGGGGT
GAGTTTGGATTTCATTTCAGGAAACTCTATAATATAAGCTATATAAATTT
ATAAATGTAAGCAAAAGATACATTTAGATCTAGCACAAGATTTCGTAATA
TTAGAGTAATATTGTAAAAACAAATTGAATTTTTAAAAAAGAAACTTCCT
AGTGAAATTGAAATAAATCTTCTGAATGAAACAAAAAAAAAAAAAAAAAA

LD09531.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG42569-RA 2105 CG42569-RA 69..2103 1..2035 10175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9136024..9137743 314..2032 8460 99.6 Plus
chrX 22417052 chrX 9135651..9135963 1..313 1565 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9244207..9245928 314..2035 8610 100 Plus
X 23542271 X 9243834..9244146 1..313 1565 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9252305..9254026 314..2035 8610 100 Plus
X 23527363 X 9251932..9252244 1..313 1565 100 Plus
Blast to na_te.dros performed 2019-03-16 11:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2498..2541 732..775 130 77.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6823 733..780 123 72.9 Plus

LD09531.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:17:25 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9135651..9135963 1..313 100 -> Plus
chrX 9136024..9137743 314..2032 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:42:32 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
mxc-RA 1..1788 43..1830 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:34 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
CG42569-RA 1..1788 43..1830 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:12:06 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
Larp7-RA 1..1788 43..1830 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:35 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
mxc-RA 1..1788 43..1830 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:12 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
Larp7-RA 1..1788 43..1830 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:18 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
mxc-RA 10..2041 1..2032 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:34 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
CG42569-RA 10..2041 1..2032 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:06 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
Larp7-RA 18..2049 1..2032 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:36 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
mxc-RA 10..2041 1..2032 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:12 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
Larp7-RA 18..2049 1..2032 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:25 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
X 9243834..9244146 1..313 100 -> Plus
X 9244207..9245925 314..2032 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:25 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
X 9243834..9244146 1..313 100 -> Plus
X 9244207..9245925 314..2032 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:25 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
X 9243834..9244146 1..313 100 -> Plus
X 9244207..9245925 314..2032 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:06 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9137867..9138179 1..313 100 -> Plus
arm_X 9138240..9139958 314..2032 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:45:42 Download gff for LD09531.complete
Subject Subject Range Query Range Percent Splice Strand
X 9251932..9252244 1..313 100 -> Plus
X 9252305..9254023 314..2032 100   Plus

LD09531.pep Sequence

Translation from 42 to 1829

> LD09531.pep
MAAKSIEKEKGEGQEPATSAEKPDPAAPTEPAEENSKEPAPEDASPDKKD
GGRKRKRHLFNSIRGQMEFYFGDANLSKDRFLRRYVEQDPYVPLEIFLTF
NKIKTLTQDVQQIAKALSNSQLLELDETELKVKRRTKLPDQRDVNDKTLY
VEALPANATHDWLKEVFSRYGPVAYVSLPHYPGTKKIKEFAFIEFEKSGS
LEKAVKAFAQIQGVLSVETDPSDLASVRSFQQQQQIQQKAEQPQSEAEQV
ELPKRNLKREATDKDREEIHEVKRVKLEEGQPSETSTAGETASETDAEGT
AEASEQEDKTEATDGDEAAKKRRRKRKKKAIVDKPNIEPSALELKVLPKT
SWSSMRNKYLNLQRRIVSEAKSKLWRENHPQNQQHPHHQQTSHPNHPKPS
QLPEAVKEEETGGEVPSDGGEGAVEAAPVPAKRRKAVHKMNMNFYGAGGV
ESTKSEEPSQERTPLFKYEPGLIVECSLLKPCTNVKEFKAEMRQYPDIKY
VDIKEGDQVALLRLGTPAAAEELLRQVNCSERQLKVLSGQQETLYWRKIE
QDREAKLSKKVRVQQKRGREKVGKMLGKHIKFDDGDDEVQAAAMD*

LD09531.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19208-PA 607 GF19208-PA 7..593 13..582 2059 72.8 Plus
Dana\GF15376-PA 391 GF15376-PA 22..202 25..196 198 30 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18304-PA 595 GG18304-PA 1..595 1..595 2634 91.3 Plus
Dere\GG21576-PA 390 GG21576-PA 53..202 62..196 191 30 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12028-PA 620 GH12028-PA 4..598 9..589 1771 61 Plus
Dgri\GH13748-PA 392 GH13748-PA 19..205 3..197 185 27.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
Larp7-PA 595 CG42569-PA 1..595 1..595 3059 100 Plus
La-PA 390 CG10922-PA 2..350 17..334 240 25.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14301-PA 613 GI14301-PA 1..599 1..589 1727 60 Plus
Dmoj\GI17890-PA 390 GI17890-PA 53..203 62..197 178 29.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18292-PA 102 GL18292-PA 1..97 1..97 268 59.4 Plus
Dper\GL26419-PA 391 GL26419-PA 55..204 62..196 191 30.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11366-PA 626 GA11366-PA 1..616 1..593 1937 66.8 Plus
Dpse\GA27844-PA 226 GA27844-PA 1..214 67..297 776 70.4 Plus
Dpse\GA27845-PA 510 GA27845-PA 1..208 67..291 753 70.5 Plus
Dpse\GA27853-PA 641 GA27853-PA 1..208 67..291 746 70 Plus
Dpse\GA27847-PA 216 GA27847-PA 1..204 67..293 715 66.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22404-PA 113 GM22404-PA 1..106 1..106 524 92.5 Plus
Dsec\GM23332-PA 390 GM23332-PA 53..202 62..196 189 30 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24774-PA 104 GD24774-PA 1..104 492..595 510 93.3 Plus
Dsim\GD21707-PA 390 GD21707-PA 53..202 62..196 188 30 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19358-PA 620 GJ19358-PA 1..606 1..589 1798 62.4 Plus
Dvir\GJ17394-PA 392 GJ17394-PA 55..205 62..197 180 29.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25140-PA 633 GK25140-PA 19..628 11..592 1812 62.6 Plus
Dwil\GK25043-PA 172 GK25043-PA 58..167 484..592 379 68.2 Plus
Dwil\GK25043-PA 172 GK25043-PA 11..63 37..90 209 72.2 Plus
Dwil\GK18125-PA 404 GK18125-PA 64..277 62..254 190 28.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17783-PA 595 GE17783-PA 1..595 1..595 2628 92.3 Plus
Dyak\GE12598-PA 390 GE12598-PA 35..202 38..196 192 29.9 Plus

LD09531.hyp Sequence

Translation from 42 to 1829

> LD09531.hyp
MAAKSIEKEKGEGQEPATSAEKPDPAAPTEPAEENSKEPAPEDASPDKKD
GGRKRKRHLFNSIRGQMEFYFGDANLSKDRFLRRYVEQDPYVPLEIFLTF
NKIKTLTQDVQQIAKALSNSQLLELDETELKVKRRTKLPDQRDVNDKTLY
VEALPANATHDWLKEVFSRYGPVAYVSLPHYPGTKKIKEFAFIEFEKSGS
LEKAVKAFAQIQGVLSVETDPSDLASVRSFQQQQQIQQKAEQPQSEAEQV
ELPKRNLKREATDKDREEIHEVKRVKLEEGQPSETSTAGETASETDAEGT
AEASEQEDKTEATDGDEAAKKRRRKRKKKAIVDKPNIEPSALELKVLPKT
SWSSMRNKYLNLQRRIVSEAKSKLWRENHPQNQQHPHHQQTSHPNHPKPS
QLPEAVKEEETGGEVPSDGGEGAVEAAPVPAKRRKAVHKMNMNFYGAGGV
ESTKSEEPSQERTPLFKYEPGLIVECSLLKPCTNVKEFKAEMRQYPDIKY
VDIKEGDQVALLRLGTPAAAEELLRQVNCSERQLKVLSGQQETLYWRKIE
QDREAKLSKKVRVQQKRGREKVGKMLGKHIKFDDGDDEVQAAAMD*

LD09531.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
Larp7-PA 595 CG42569-PA 1..595 1..595 3059 100 Plus
La-PA 390 CG10922-PA 2..350 17..334 240 25.1 Plus