Clone LD09536 Report

Search the DGRC for LD09536

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:95
Well:36
Vector:pBS SK-
Associated Gene/Transcriptnero-RA
Protein status:LD09536.pep: gold
Preliminary Size:1214
Sequenced Size:1092

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2245 2001-01-01 Release 2 assignment
CG2245 2002-05-17 Blastp of sequenced clone
CG2245 2003-01-01 Sim4 clustering to Release 3
l(3)s1921 2008-04-29 Release 5.5 accounting
l(3)s1921 2008-08-15 Release 5.9 accounting
l(3)s1921 2008-12-18 5.12 accounting

Clone Sequence Records

LD09536.complete Sequence

1092 bp (1092 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118500

> LD09536.complete
CCCGTTGCAGTTTTTTATTTATAAGTCCACACCGCATACAAATGGTTTCG
CAGCAGCAAATCGAGGCCATTGGAGGCGTTCTGAACAACAAGGAACGCCC
ACTGAAAGAGCGCTTTCGAGCCCTCTTCACGCTGAAGAACATCGGCGGAG
GAGCGGCCATCGAGGCGATCAGCAAAGCCTTTGACGATGATTCGGCCCTT
CTCAAACATGAGCTGGCCTACTGCTTGGGTCAGATGCAGGACGCACAGGC
GTTAGACATCCTCACCAAGGTGCTAAAGGACACCACCCAGGAGCCGATGG
TGCGCCACGAGGCTGCGGAGGCCATGGGCGCCATTGGTCATCCAGATGTG
CTGCCAATTCTGGAGGAGTACAAACAAGATCCGGTAGTGGAGGTGGCCGA
AACATGTGCCATTGCTCTGGACCGCGTCCGCTGGCTGCAGAGTGGCCAAA
AGGTAGATGACAGCAACCCTTACGCCTCCGTTGATCCCTCACCGCCAACT
GCGGGCGACAAGAGCGTCACCGAGCTGAAGGCCATCTATCTGGATGCCCA
GCAGAGCCTGTTCGATCGATATAGGGCCATGTTCAGCCTGCGCAATCTGC
GCACCGAAGAGAGTGTCTTGGCCATTGCCGAGGGACTTAAGGACTCTTCC
GCCCTCTTCCGCCACGAGGTGGCCTTCGTACTGGGCCAGCTGCAAGAACC
CTGCAGCATTCCCTTCCTTCAAGAGAATCTGGAGGATCGCCTGGAAAACG
AAATGGTGCGTCACGAGTGTGCCGAGGCCCTTGGCGCCATCGCCACAGAG
GACTGCATTCAGATCTTGAACCGCTACGCCGAGGACGACAAGCGCGTGGT
CAAGGAGAGCTGCGTCATCGCCCTGGACATGTGCGAGTACGAGAACAGTC
CGGAGTTCCAATATGCCGACGGCCTAGCCAAACTAGACGCGACCAAGTGA
TTTTCGCCGAACATTTGCATCTACCAGCTGTGTATATATTAGTCGTAAAC
TTGTATTGTTTTGTCACTTCTGTGATCACATGGACCTAATCTTATCGAGA
CATAAAAAGAAATTTGAACGTGAAAAAAAAAAAAAAAAAAAA

LD09536.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)s1921-RA 1085 l(3)s1921-RA 14..1085 1..1072 5360 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27568796..27569867 1072..1 5360 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31746444..31747516 1073..1 5365 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31487275..31488347 1073..1 5365 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:39:02 has no hits.

LD09536.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:40:02 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27568796..27569867 1..1072 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:42:35 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)s1921-RA 1..909 42..950 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:48:54 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
nero-RA 1..909 42..950 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:03:54 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
nero-RA 1..909 42..950 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:41:40 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)s1921-RA 1..909 42..950 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:34 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
nero-RA 1..909 42..950 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:26:00 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)s1921-RA 14..1085 1..1072 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:48:53 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
nero-RA 14..1085 1..1072 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:54 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
nero-RA 43..1114 1..1072 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:41:40 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)s1921-RA 14..1085 1..1072 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:34 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
nero-RA 43..1114 1..1072 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:40:02 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31746445..31747516 1..1072 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:40:02 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31746445..31747516 1..1072 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:40:02 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31746445..31747516 1..1072 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:54 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27572167..27573238 1..1072 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:13:45 Download gff for LD09536.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31487276..31488347 1..1072 100   Minus

LD09536.hyp Sequence

Translation from 2 to 949

> LD09536.hyp
RCSFLFISPHRIQMVSQQQIEAIGGVLNNKERPLKERFRALFTLKNIGGG
AAIEAISKAFDDDSALLKHELAYCLGQMQDAQALDILTKVLKDTTQEPMV
RHEAAEAMGAIGHPDVLPILEEYKQDPVVEVAETCAIALDRVRWLQSGQK
VDDSNPYASVDPSPPTAGDKSVTELKAIYLDAQQSLFDRYRAMFSLRNLR
TEESVLAIAEGLKDSSALFRHEVAFVLGQLQEPCSIPFLQENLEDRLENE
MVRHECAEALGAIATEDCIQILNRYAEDDKRVVKESCVIALDMCEYENSP
EFQYADGLAKLDATK*

LD09536.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
nero-PA 302 CG2245-PA 1..302 14..315 1535 100 Plus

LD09536.pep Sequence

Translation from 41 to 949

> LD09536.pep
MVSQQQIEAIGGVLNNKERPLKERFRALFTLKNIGGGAAIEAISKAFDDD
SALLKHELAYCLGQMQDAQALDILTKVLKDTTQEPMVRHEAAEAMGAIGH
PDVLPILEEYKQDPVVEVAETCAIALDRVRWLQSGQKVDDSNPYASVDPS
PPTAGDKSVTELKAIYLDAQQSLFDRYRAMFSLRNLRTEESVLAIAEGLK
DSSALFRHEVAFVLGQLQEPCSIPFLQENLEDRLENEMVRHECAEALGAI
ATEDCIQILNRYAEDDKRVVKESCVIALDMCEYENSPEFQYADGLAKLDA
TK*

LD09536.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23253-PA 302 GF23253-PA 1..302 1..302 1537 94.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11857-PA 302 GG11857-PA 1..302 1..302 1576 97.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14125-PA 302 GH14125-PA 1..302 1..302 1310 79.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
nero-PA 302 CG2245-PA 1..302 1..302 1535 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10655-PA 302 GI10655-PA 1..302 1..302 1458 88.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23526-PA 302 GL23526-PA 1..302 1..302 1459 90.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15318-PA 302 GA15318-PA 1..302 1..302 1464 91.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16420-PA 302 GM16420-PA 1..302 1..302 1584 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16326-PA 302 GD16326-PA 1..302 1..302 1581 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23012-PA 302 GJ23012-PA 1..302 1..302 1461 89.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14046-PA 304 GK14046-PA 4..304 2..302 1438 88.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23304-PA 302 GE23304-PA 1..302 1..302 1577 98 Plus