Clone LD09558 Report

Search the DGRC for LD09558

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:95
Well:58
Vector:pBS SK-
Associated Gene/TranscriptAtg13-RA
Protein status:LD09558.pep: gold
Preliminary Size:2763
Sequenced Size:2993

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7331 2001-10-10 Blastp of sequenced clone
CG7331 2003-01-01 Sim4 clustering to Release 3
CG7331 2008-04-29 Release 5.5 accounting
CG7331 2008-08-15 Release 5.9 accounting
CG7331 2008-12-18 5.12 accounting

Clone Sequence Records

LD09558.complete Sequence

2993 bp (2993 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061109

> LD09558.complete
CTGGTCTGGTTTTATTTTATGTTAACGGGAGTGATCTTGCGTACAAACAA
TAACACGGAATCGCAGTGAAAGGGCGTTGCACAAATGACAGTGTTTTGGC
AAAATGCCCGGGCTAGTTTTGACCACGTTTAGCAGTGCCTAGAACGCAGA
GTGCGCGACGCTAAAACAAGAGAACCGCGACAAAACAAAACGCGGAAACG
CATAAAGTGAAAAAAAAAACACAAACGCAGACAGCGAACTTTGGACACAG
ACAATCGTAAACGCACGGGGAAAACAAAGAAAAACGAAGAAATGTCGGCG
CAGCGTCTAAATGCAGCGGAACGGGATTTGGAGAAGTTCATCAAGTTCCT
GGTCTTGAAGTCCACCCAGGTGGTGGTGCAGTCCCGACTGGGCGAGAAGA
TGCAGACACAGTGCAATCCACTGGCGGGCAGTGATTGGTTTAACATAGCC
GTGCAGGATCATCCGGAGGTCCTGGACGAGACCAAGCGGGCTCTGAACCT
AAAGACAGGAGAGAGCATTCTGCAGCGCCTGCCGTTGTGCGTGGAAATAT
CCCTGAAAACGACTGAGGGTGACCAGATGGTGTTGGAGGTGTGGTCCCTA
GACCTGCTCCAGCCCCAGAATGGTGCCTCCCCGGCCACCAATGACCTGAA
CCCCGAAGGCCAGACCCTAAAGGCAGCCCACGCCATCTACAATCGCATGG
GCATCATGCTCAAGTCCCTCATATCGCTGACCCGCACCACGCCCGCCTAC
AAATTATCCCGGCGCCAGTGCCCCGACTCGTATGGCATCTTCTACAGGAT
CTACGTGGACAGGCCGCAGGTCCACACCCTGGGCGAGGGTCACAAGCACG
TAAAGATCGGACAACTCAGCACGATTGTTGGCTCGCTGGTCATGTCCGTG
GCCTACCGCACAAAGCTGACCATTTCGCCCACGGCTGCCCAGTCAGAGAG
CAACACCATAATGCTGAAGTCGGATCACTTTAGACCCGCCACGGATGCCA
ATACACCTGGCAACCAGCAGCAGACTCAAAATGGCACTGTCGTGGCCAAG
AAACTGGGCTTGGGTGCCCTAAATCCCGCCCAGGGTACAGCCGATCGGCG
GTTTATCGATATAGAGAAGCCGTTGCGACCGGGAGCCTTCACAGATATGG
GCAAACTAAAGCAGTACACTGAAGATGACTTTGTGTTGCCGGAAACCCCG
CCTTTCGAGTGGCTTTTGCGAGGACGCGGCTCTGTGGAGTCCCTCAATCG
ACTGGATAACAATTCGGTCGCCAGTGTAAACATCAGTAATAACAACAATA
GTACGCAGGATAGTAAATTCAACCAGATCAGCAATCTCAACAACAACTCG
GCAGGCTTCAAGAGTTTCGAGAAGAACTCGGAAAACTCAGTATCGCCAAT
AAAGAGCCTGCTGATCCCCGCCAGCGCCACAGCCACATATCGTCACCATT
CAGAGCCTTCGCTACAACCACCGCCTGATGATGATAATCTGCTAAAAGAG
CTCCACTTCCCTTTCGCCTCGCCCACGTCGCACGTAAACGATCTGGCCAA
GTTCTACAGGGAATGCTATCATGCGCCACCGCTGAAGGGACTTAATGAAC
TGCAGGCAGAGATCTCATCGATTTCCTCGACCCCGCCAGCATCCAGTGGT
TCCGGCGGTGTAGCAGCATGCGGTCCGACGGCGGCGGCCACAGCGATCGC
AACCAGTTCCGCTGATGCCAGCGCCATGGACGATCTGTCCCGGCAACTGG
AGCAGTTCGAGACCTCGCTGGAGGACTACGACAAGCTGGTCTCGCAGTTC
GGGCTAACGGGCTCCTCATCGACGGGTAGCCGCAGCAGTGGTGGGCTCCA
AATGAGCAACTGAGCGGAATAATGCCTCTAGTTATGTCATTAGTTAGTTT
TTATTTATGGAAGGGCGGTCAATATGGAGAGAGGCAGGGACAAACTAAAA
TATCAAGGACGACTTTAGAAAGATTGCTTGGGAAAGTAAAGGTCTTAAGT
TCAGCATTTCTCTCATCCTTTTAAAATCAGTTTTCAGTTATGTATTTCGA
TTAGATAAGGAATGTAAGATCAGATTTTACTGCATAATGTTTATATGTCT
TTTTAAAACAACCTACTTTCTTATCACCCAAGCAATGTTGCATAATGATT
AAAGAATATTTTCAAAGAAATGGATTTCAGACCTATACTTTGGCTTGAGC
CCTCGCATATAAATGTTGTAAGATTGTCAACTAAAATATAGACCCGCCCT
CATATTTATATATGCCATTGTGTTAAGTAGAGTTGATAGGCTGCTATTTG
ATATTACCCACTATGTAAATACAATATATATATATATATATATATAGGCT
TTTGTAGGCTCTAGGACGATGGAAGATGTATATACATAGGAATTGGAGAG
CTCATGTCACGTTTCAAAGTTTCCGATGCAGCAGTTTAGACCCTAGACAC
AAATACATACATAAGCAAGTGACCCATGCAAATGCATATAGATGGCTATA
TAGCTTGTGCATATGGTAGTAAGTTGGGCGTACTCGTCGCCTGTTTGTTT
GTTTGTTTCTTTGTTCAAGTGCCTTTCGCCTGCTTGTGAGTGAAAAAATC
ATGTATGTACATAAATAACTATAGATAACAGCAATTAATCAGAAAGCCAA
AAGGTTTATTTCTGCCGGAAGTCAGCAAGTAAGAACTGTTCGATCTATGC
AAATGCATATCCACTAATCGAAAGACTTGAAGCATAACGAAATATATCTA
TCCTAACTTAGTTGGCACTGTCAGGAAGTTGAAGAGAGCAGCTAGTGTTT
TGTTTTGTCTTTAATCGTTGGTCGCTCTTGCTTATTTATTTGGTTTACAA
TTGCAAAATTATGAATATGAGAATCGAAATTCGAGTATACATTAAAAAAA
CACTAAACGATAAGAGTAAGAACATTTATACGTACATATAAACAATGAAT
AAAAGCAATTGTTAATCAAGACACTAAAAAAAAAAAAAAAAAA

LD09558.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
Atg13-RA 3016 Atg13-RA 42..3016 1..2975 14875 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4175855..4178829 1..2975 14875 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8349843..8352819 1..2977 14885 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8090674..8093650 1..2977 14885 100 Plus
Blast to na_te.dros performed 2019-03-16 01:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 1959..2088 242..113 117 59.4 Minus

LD09558.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:42:06 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4175855..4178829 1..2975 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:42:36 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
CG7331-RA 1..1572 292..1863 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:37 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
Atg13-RA 1..1572 292..1863 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:33:10 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
Atg13-RA 1..1572 292..1863 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:38 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
CG7331-RA 1..1572 292..1863 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:39:44 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
Atg13-RA 1..1572 292..1863 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:21 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
CG7331-RA 25..2999 1..2975 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:37 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
Atg13-RA 42..3016 1..2975 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:33:10 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
Atg13-RA 29..3003 1..2975 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:38 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
CG7331-RA 25..2999 1..2975 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:39:44 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
Atg13-RA 29..3003 1..2975 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:42:06 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8349843..8352817 1..2975 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:42:06 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8349843..8352817 1..2975 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:42:06 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8349843..8352817 1..2975 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:33:10 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4175565..4178539 1..2975 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:45:45 Download gff for LD09558.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8090674..8093648 1..2975 100   Plus

LD09558.pep Sequence

Translation from 291 to 1862

> LD09558.pep
MSAQRLNAAERDLEKFIKFLVLKSTQVVVQSRLGEKMQTQCNPLAGSDWF
NIAVQDHPEVLDETKRALNLKTGESILQRLPLCVEISLKTTEGDQMVLEV
WSLDLLQPQNGASPATNDLNPEGQTLKAAHAIYNRMGIMLKSLISLTRTT
PAYKLSRRQCPDSYGIFYRIYVDRPQVHTLGEGHKHVKIGQLSTIVGSLV
MSVAYRTKLTISPTAAQSESNTIMLKSDHFRPATDANTPGNQQQTQNGTV
VAKKLGLGALNPAQGTADRRFIDIEKPLRPGAFTDMGKLKQYTEDDFVLP
ETPPFEWLLRGRGSVESLNRLDNNSVASVNISNNNNSTQDSKFNQISNLN
NNSAGFKSFEKNSENSVSPIKSLLIPASATATYRHHSEPSLQPPPDDDNL
LKELHFPFASPTSHVNDLAKFYRECYHAPPLKGLNELQAEISSISSTPPA
SSGSGGVAACGPTAAATAIATSSADASAMDDLSRQLEQFETSLEDYDKLV
SQFGLTGSSSTGSRSSGGLQMSN*

LD09558.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18349-PA 534 GF18349-PA 1..534 1..523 2100 84.3 Plus
Dana\GF23061-PA 120 GF23061-PA 1..37 136..172 166 83.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10477-PA 523 GG10477-PA 1..523 1..523 2702 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14376-PA 535 GH14376-PA 1..535 1..523 1676 68.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Atg13-PA 523 CG7331-PA 1..523 1..523 2676 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24887-PA 548 GI24887-PA 1..548 1..523 1591 63.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24192-PA 466 GL24192-PA 6..196 11..187 809 80.6 Plus
Dper\GL24192-PA 466 GL24192-PA 198..466 265..523 776 76.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20267-PA 551 GA20267-PA 3..551 2..523 1917 77.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23731-PA 523 GM23731-PA 1..523 1..523 2762 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18541-PA 522 GD18541-PA 1..522 1..523 2721 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24530-PA 548 GJ24530-PA 1..548 1..523 1572 65.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13876-PA 530 GK13876-PA 1..530 1..523 1687 68.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25875-PA 523 GE25875-PA 1..523 1..523 2444 96.6 Plus

LD09558.hyp Sequence

Translation from 291 to 1862

> LD09558.hyp
MSAQRLNAAERDLEKFIKFLVLKSTQVVVQSRLGEKMQTQCNPLAGSDWF
NIAVQDHPEVLDETKRALNLKTGESILQRLPLCVEISLKTTEGDQMVLEV
WSLDLLQPQNGASPATNDLNPEGQTLKAAHAIYNRMGIMLKSLISLTRTT
PAYKLSRRQCPDSYGIFYRIYVDRPQVHTLGEGHKHVKIGQLSTIVGSLV
MSVAYRTKLTISPTAAQSESNTIMLKSDHFRPATDANTPGNQQQTQNGTV
VAKKLGLGALNPAQGTADRRFIDIEKPLRPGAFTDMGKLKQYTEDDFVLP
ETPPFEWLLRGRGSVESLNRLDNNSVASVNISNNNNSTQDSKFNQISNLN
NNSAGFKSFEKNSENSVSPIKSLLIPASATATYRHHSEPSLQPPPDDDNL
LKELHFPFASPTSHVNDLAKFYRECYHAPPLKGLNELQAEISSISSTPPA
SSGSGGVAACGPTAAATAIATSSADASAMDDLSRQLEQFETSLEDYDKLV
SQFGLTGSSSTGSRSSGGLQMSN*

LD09558.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
Atg13-PA 523 CG7331-PA 1..523 1..523 2676 100 Plus