BDGP Sequence Production Resources |
Search the DGRC for LD09558
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 95 |
Well: | 58 |
Vector: | pBS SK- |
Associated Gene/Transcript | Atg13-RA |
Protein status: | LD09558.pep: gold |
Preliminary Size: | 2763 |
Sequenced Size: | 2993 |
Gene | Date | Evidence |
---|---|---|
CG7331 | 2001-10-10 | Blastp of sequenced clone |
CG7331 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7331 | 2008-04-29 | Release 5.5 accounting |
CG7331 | 2008-08-15 | Release 5.9 accounting |
CG7331 | 2008-12-18 | 5.12 accounting |
2993 bp (2993 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061109
> LD09558.complete CTGGTCTGGTTTTATTTTATGTTAACGGGAGTGATCTTGCGTACAAACAA TAACACGGAATCGCAGTGAAAGGGCGTTGCACAAATGACAGTGTTTTGGC AAAATGCCCGGGCTAGTTTTGACCACGTTTAGCAGTGCCTAGAACGCAGA GTGCGCGACGCTAAAACAAGAGAACCGCGACAAAACAAAACGCGGAAACG CATAAAGTGAAAAAAAAAACACAAACGCAGACAGCGAACTTTGGACACAG ACAATCGTAAACGCACGGGGAAAACAAAGAAAAACGAAGAAATGTCGGCG CAGCGTCTAAATGCAGCGGAACGGGATTTGGAGAAGTTCATCAAGTTCCT GGTCTTGAAGTCCACCCAGGTGGTGGTGCAGTCCCGACTGGGCGAGAAGA TGCAGACACAGTGCAATCCACTGGCGGGCAGTGATTGGTTTAACATAGCC GTGCAGGATCATCCGGAGGTCCTGGACGAGACCAAGCGGGCTCTGAACCT AAAGACAGGAGAGAGCATTCTGCAGCGCCTGCCGTTGTGCGTGGAAATAT CCCTGAAAACGACTGAGGGTGACCAGATGGTGTTGGAGGTGTGGTCCCTA GACCTGCTCCAGCCCCAGAATGGTGCCTCCCCGGCCACCAATGACCTGAA CCCCGAAGGCCAGACCCTAAAGGCAGCCCACGCCATCTACAATCGCATGG GCATCATGCTCAAGTCCCTCATATCGCTGACCCGCACCACGCCCGCCTAC AAATTATCCCGGCGCCAGTGCCCCGACTCGTATGGCATCTTCTACAGGAT CTACGTGGACAGGCCGCAGGTCCACACCCTGGGCGAGGGTCACAAGCACG TAAAGATCGGACAACTCAGCACGATTGTTGGCTCGCTGGTCATGTCCGTG GCCTACCGCACAAAGCTGACCATTTCGCCCACGGCTGCCCAGTCAGAGAG CAACACCATAATGCTGAAGTCGGATCACTTTAGACCCGCCACGGATGCCA ATACACCTGGCAACCAGCAGCAGACTCAAAATGGCACTGTCGTGGCCAAG AAACTGGGCTTGGGTGCCCTAAATCCCGCCCAGGGTACAGCCGATCGGCG GTTTATCGATATAGAGAAGCCGTTGCGACCGGGAGCCTTCACAGATATGG GCAAACTAAAGCAGTACACTGAAGATGACTTTGTGTTGCCGGAAACCCCG CCTTTCGAGTGGCTTTTGCGAGGACGCGGCTCTGTGGAGTCCCTCAATCG ACTGGATAACAATTCGGTCGCCAGTGTAAACATCAGTAATAACAACAATA GTACGCAGGATAGTAAATTCAACCAGATCAGCAATCTCAACAACAACTCG GCAGGCTTCAAGAGTTTCGAGAAGAACTCGGAAAACTCAGTATCGCCAAT AAAGAGCCTGCTGATCCCCGCCAGCGCCACAGCCACATATCGTCACCATT CAGAGCCTTCGCTACAACCACCGCCTGATGATGATAATCTGCTAAAAGAG CTCCACTTCCCTTTCGCCTCGCCCACGTCGCACGTAAACGATCTGGCCAA GTTCTACAGGGAATGCTATCATGCGCCACCGCTGAAGGGACTTAATGAAC TGCAGGCAGAGATCTCATCGATTTCCTCGACCCCGCCAGCATCCAGTGGT TCCGGCGGTGTAGCAGCATGCGGTCCGACGGCGGCGGCCACAGCGATCGC AACCAGTTCCGCTGATGCCAGCGCCATGGACGATCTGTCCCGGCAACTGG AGCAGTTCGAGACCTCGCTGGAGGACTACGACAAGCTGGTCTCGCAGTTC GGGCTAACGGGCTCCTCATCGACGGGTAGCCGCAGCAGTGGTGGGCTCCA AATGAGCAACTGAGCGGAATAATGCCTCTAGTTATGTCATTAGTTAGTTT TTATTTATGGAAGGGCGGTCAATATGGAGAGAGGCAGGGACAAACTAAAA TATCAAGGACGACTTTAGAAAGATTGCTTGGGAAAGTAAAGGTCTTAAGT TCAGCATTTCTCTCATCCTTTTAAAATCAGTTTTCAGTTATGTATTTCGA TTAGATAAGGAATGTAAGATCAGATTTTACTGCATAATGTTTATATGTCT TTTTAAAACAACCTACTTTCTTATCACCCAAGCAATGTTGCATAATGATT AAAGAATATTTTCAAAGAAATGGATTTCAGACCTATACTTTGGCTTGAGC CCTCGCATATAAATGTTGTAAGATTGTCAACTAAAATATAGACCCGCCCT CATATTTATATATGCCATTGTGTTAAGTAGAGTTGATAGGCTGCTATTTG ATATTACCCACTATGTAAATACAATATATATATATATATATATATAGGCT TTTGTAGGCTCTAGGACGATGGAAGATGTATATACATAGGAATTGGAGAG CTCATGTCACGTTTCAAAGTTTCCGATGCAGCAGTTTAGACCCTAGACAC AAATACATACATAAGCAAGTGACCCATGCAAATGCATATAGATGGCTATA TAGCTTGTGCATATGGTAGTAAGTTGGGCGTACTCGTCGCCTGTTTGTTT GTTTGTTTCTTTGTTCAAGTGCCTTTCGCCTGCTTGTGAGTGAAAAAATC ATGTATGTACATAAATAACTATAGATAACAGCAATTAATCAGAAAGCCAA AAGGTTTATTTCTGCCGGAAGTCAGCAAGTAAGAACTGTTCGATCTATGC AAATGCATATCCACTAATCGAAAGACTTGAAGCATAACGAAATATATCTA TCCTAACTTAGTTGGCACTGTCAGGAAGTTGAAGAGAGCAGCTAGTGTTT TGTTTTGTCTTTAATCGTTGGTCGCTCTTGCTTATTTATTTGGTTTACAA TTGCAAAATTATGAATATGAGAATCGAAATTCGAGTATACATTAAAAAAA CACTAAACGATAAGAGTAAGAACATTTATACGTACATATAAACAATGAAT AAAAGCAATTGTTAATCAAGACACTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg13-RA | 3016 | Atg13-RA | 42..3016 | 1..2975 | 14875 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4175855..4178829 | 1..2975 | 14875 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 8349843..8352819 | 1..2977 | 14885 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8090674..8093650 | 1..2977 | 14885 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 1959..2088 | 242..113 | 117 | 59.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4175855..4178829 | 1..2975 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7331-RA | 1..1572 | 292..1863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg13-RA | 1..1572 | 292..1863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg13-RA | 1..1572 | 292..1863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7331-RA | 1..1572 | 292..1863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg13-RA | 1..1572 | 292..1863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7331-RA | 25..2999 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg13-RA | 42..3016 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg13-RA | 29..3003 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7331-RA | 25..2999 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg13-RA | 29..3003 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8349843..8352817 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8349843..8352817 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8349843..8352817 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4175565..4178539 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8090674..8093648 | 1..2975 | 100 | Plus |
Translation from 291 to 1862
> LD09558.pep MSAQRLNAAERDLEKFIKFLVLKSTQVVVQSRLGEKMQTQCNPLAGSDWF NIAVQDHPEVLDETKRALNLKTGESILQRLPLCVEISLKTTEGDQMVLEV WSLDLLQPQNGASPATNDLNPEGQTLKAAHAIYNRMGIMLKSLISLTRTT PAYKLSRRQCPDSYGIFYRIYVDRPQVHTLGEGHKHVKIGQLSTIVGSLV MSVAYRTKLTISPTAAQSESNTIMLKSDHFRPATDANTPGNQQQTQNGTV VAKKLGLGALNPAQGTADRRFIDIEKPLRPGAFTDMGKLKQYTEDDFVLP ETPPFEWLLRGRGSVESLNRLDNNSVASVNISNNNNSTQDSKFNQISNLN NNSAGFKSFEKNSENSVSPIKSLLIPASATATYRHHSEPSLQPPPDDDNL LKELHFPFASPTSHVNDLAKFYRECYHAPPLKGLNELQAEISSISSTPPA SSGSGGVAACGPTAAATAIATSSADASAMDDLSRQLEQFETSLEDYDKLV SQFGLTGSSSTGSRSSGGLQMSN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18349-PA | 534 | GF18349-PA | 1..534 | 1..523 | 2100 | 84.3 | Plus |
Dana\GF23061-PA | 120 | GF23061-PA | 1..37 | 136..172 | 166 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10477-PA | 523 | GG10477-PA | 1..523 | 1..523 | 2702 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14376-PA | 535 | GH14376-PA | 1..535 | 1..523 | 1676 | 68.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg13-PA | 523 | CG7331-PA | 1..523 | 1..523 | 2676 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24887-PA | 548 | GI24887-PA | 1..548 | 1..523 | 1591 | 63.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24192-PA | 466 | GL24192-PA | 6..196 | 11..187 | 809 | 80.6 | Plus |
Dper\GL24192-PA | 466 | GL24192-PA | 198..466 | 265..523 | 776 | 76.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20267-PA | 551 | GA20267-PA | 3..551 | 2..523 | 1917 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23731-PA | 523 | GM23731-PA | 1..523 | 1..523 | 2762 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18541-PA | 522 | GD18541-PA | 1..522 | 1..523 | 2721 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24530-PA | 548 | GJ24530-PA | 1..548 | 1..523 | 1572 | 65.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13876-PA | 530 | GK13876-PA | 1..530 | 1..523 | 1687 | 68.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25875-PA | 523 | GE25875-PA | 1..523 | 1..523 | 2444 | 96.6 | Plus |
Translation from 291 to 1862
> LD09558.hyp MSAQRLNAAERDLEKFIKFLVLKSTQVVVQSRLGEKMQTQCNPLAGSDWF NIAVQDHPEVLDETKRALNLKTGESILQRLPLCVEISLKTTEGDQMVLEV WSLDLLQPQNGASPATNDLNPEGQTLKAAHAIYNRMGIMLKSLISLTRTT PAYKLSRRQCPDSYGIFYRIYVDRPQVHTLGEGHKHVKIGQLSTIVGSLV MSVAYRTKLTISPTAAQSESNTIMLKSDHFRPATDANTPGNQQQTQNGTV VAKKLGLGALNPAQGTADRRFIDIEKPLRPGAFTDMGKLKQYTEDDFVLP ETPPFEWLLRGRGSVESLNRLDNNSVASVNISNNNNSTQDSKFNQISNLN NNSAGFKSFEKNSENSVSPIKSLLIPASATATYRHHSEPSLQPPPDDDNL LKELHFPFASPTSHVNDLAKFYRECYHAPPLKGLNELQAEISSISSTPPA SSGSGGVAACGPTAAATAIATSSADASAMDDLSRQLEQFETSLEDYDKLV SQFGLTGSSSTGSRSSGGLQMSN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg13-PA | 523 | CG7331-PA | 1..523 | 1..523 | 2676 | 100 | Plus |