Clone LD09584 Report

Search the DGRC for LD09584

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:95
Well:84
Vector:pBS SK-
Associated Gene/TranscriptCG8745-RA
Protein status:LD09584.pep: gold
Preliminary Size:2582
Sequenced Size:2422

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8745 2001-01-01 Release 2 assignment
CG8745 2001-10-10 Blastp of sequenced clone
CG8745 2003-01-01 Sim4 clustering to Release 3
CG8745 2008-04-29 Release 5.5 accounting
CG8745 2008-08-15 Release 5.9 accounting
CG8745 2008-12-18 5.12 accounting

Clone Sequence Records

LD09584.complete Sequence

2422 bp (2422 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061111

> LD09584.complete
AAGGCGACCGTGCCTGCCAGCGACTGTCCAGGAGCACCGATTATCCTGCC
AGGACTCCAGTCTCAACACACGGCTCAAAGCTAATTTAAATCAAGTCACT
TGCCAGTTCTAAAAGTGCGCGCTTTTCTGCCGATTTTAAATAACTGAGTT
AAAAAAAAAAACAAAATAAAATCAAAATATATCTTAAAAATGCCTTTCGC
CCACGAGCAACTGAATCTGGTGGCCAGCGAGCAGCTGAGCAAAACGGAGA
CCATCAAGCTGCGCAACCAGCACATCGGACAAGCCTGCCAGCTCTTCTAT
CGCTCTGATCCCCTGAAAATTGTGCGCGGTCAAGGTCAATATATGTTTGA
TGAGGAGGGCACCCGGTATCTGGACTGCATCAACAATGTAGCCCACGTGG
GTCATTGCCATCCGGAGGTGGTGCGAGCTGGAGCCCTGCAGATGGCCACC
ATCTCGACGAACAACCGCTTCCTCCACGACGAACTGGTCCAGTGTGCTCG
CACGTTGACCAGCAAAATGCCGGAGCCTCTGTCCGTTTGCTTCTTCGTCA
ATTCCGGATCCGAGGCCAATGACCTGGCCCTTCGATTGGCCCGCAACTTT
ACTAAGCGTCAGGATGTTATCACTCTCGACCATGCCTATCATGGTCATCT
GCAGTCGGTGATGGAGGTGTCTCCATACAAATTTAACCAGCCCGGCGGCG
AGGCCAAGCCCGACTACGTGCATGTGGCGCCGTGCCCGGACGTTTATGGC
GGAAAGTTTACGGACAAGATGTATCCGGATGCTGACATGGGTGCCCTGTA
TGCTCAGCCCATCGAGGAGATCTGCCAGAAGCAGTTGGCCAAAGGACAGG
GCGTCGCCGCCTTCATTGCCGAGAGTCTGCAGAGTTGCGGTGGACAGATT
TTGCCACCAGCCGGATACTTCCAGGCAGTCTACGATGCGGTACGCTCTGC
CGGAGGCGTTTGCATTGCTGACGAGGTTCAGGTGGGATTTGGACGCGTGG
GCAGCCACTATTGGGCATTCGAGACCCAAAACGTAATCCCCGATATTGTG
TGTGTGGCCAAGCCCATGGGCAATGGACATCCGGTGGGTGCGGTAGTTAC
CACTCCGGAAATCGCTCAGGCCTTCCATGCCACCGGAGTTGCTTACTTTA
ACACTTATGGCGGCAATCCGGTCTCCTGTGCGATCGCCAATGCAGTGATG
CGCGTTATCGAGGAGGAGGGTCTGCAACAGAAGGCTCTTGTTTTGGGCGA
TTATCTTTTGGAGGAGTGCAATCGTCTGAAGCAAGAATTCGAGTGCATTG
GCGATGTGCGAGGCGCTGGACTCTTCGTGGGCATAGAGCTGGTCCAGGAT
CGGAAGGAGCGTATTCCCGACAAGAAGGCTGCCCACTGGGTGGTCAACCG
GATGAAGCAGCTCCACCGGGTGCTCGTTTCCTCCGACGGTCCCAACGATA
ACGTGATCAAGCTAAAGCCACCCATGTGCTTCAACCGGGAGAATGCAGAT
GAATTCCTGCTGGGATTCCGGGAGTGCTTGACCGCCGTGATGCAGGAGCG
GCTGGCCAGTGCCACATCAGCCGCCATGGCTGCTACCAGTGGTGTCATTG
CAACAGCCACTGAGACACTGGCCAACAAGACGAAACTCTTCGAGCGGCAG
GATCGCCTTATCAAGTCCGTCTGAGGCAGTGCCTGCTGGTTGGCCAATGC
CACCACCAACAACGTCTCTTCGCCCGGGCACAAAATAGCTTTAGCCACCA
AGGATATTTAAATTATTCCATGATCCCCATGTCCGCTGTTCCCATAAAAA
ATTAGAAGTAATTCGCAAAATTTCCATTTTTTAGCTGTAGTATCAACATG
TTTATTTGCTTAGAATTAGACCCACTTATCTGTAATCTACATTTATATTT
TTACGCTGTATAATCATTATCCTCTTCGCCAATTATCTTCTAGTATCTAG
AAACGTAGGGAGCCCAGAACGAATTTCTTGAATTGTTATATCCCCAACAT
CATGTATATATGAATTTATGAATATATTTAGTATATGTTACAAATGTTGT
TAAAATGTTACGTATATTTTGTATAACTACAATGTTTTTTTCACGTAAAT
GTCAATTATGAAATTCGAAACTTCTGTGCGATTTCTCGACACAACATTTA
ATTTTTGGTAAATACTGTTTTGCTTGTCAAGAGGGGTGAGACTTTACTGA
TCACGTTGATCCGCCTAATTTTATAAACGATTACTTGCAAATATGATAGA
TGTAAGCAAAATGTAGAATATTTGTAGAATATTCTACCTTTTCTGGGTGT
ATGTGTATATAAAAACCCCGATGAGTATGCAAATGTTTGATGCGGCTAAC
GTTGAGTTACAAGTAGAGTTTTGTTGTGTGAATAAAAACATCTTATAGCA
AATCAAAAAAAAAAAAAAAAAA

LD09584.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8745-RA 2613 CG8745-RA 93..2499 1..2407 12035 100 Plus
CG8745.a 2101 CG8745.a 70..2079 398..2407 10050 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 13850208..13851979 2404..633 8620 99.1 Minus
chr3L 24539361 chr3L 13856785..13857062 278..1 1390 100 Minus
chr3L 24539361 chr3L 13852100..13852335 632..397 1150 99.2 Minus
chr3L 24539361 chr3L 13855498..13855617 397..278 600 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13860024..13861798 2407..633 8875 100 Minus
3L 28110227 3L 13866603..13866880 278..1 1390 100 Minus
3L 28110227 3L 13861919..13862154 632..397 1180 100 Minus
3L 28110227 3L 13865317..13865436 397..278 600 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 13853124..13854898 2407..633 8875 100 Minus
3L 28103327 3L 13859703..13859980 278..1 1390 100 Minus
3L 28103327 3L 13855019..13855254 632..397 1180 100 Minus
3L 28103327 3L 13858417..13858536 397..278 600 100 Minus
Blast to na_te.dros performed 2019-03-15 22:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 5870..5955 2091..2004 138 65.2 Minus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 977..1042 126..192 117 68.1 Plus

LD09584.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:15:56 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 13852100..13852334 398..632 99 <- Minus
chr3L 13855498..13855616 279..397 100 <- Minus
chr3L 13850208..13851979 633..2404 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:42:40 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
CG8745-RA 1..1485 190..1674 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:29 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
CG8745-RA 1..1485 190..1674 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:13:03 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
CG8745-RA 1..1485 190..1674 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:40:26 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
CG8745-RA 1..1485 190..1674 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:08 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
CG8745-RA 1..1485 190..1674 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:11:37 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
CG8745-RA 6..2409 1..2404 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:29 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
CG8745-RA 6..2409 1..2404 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:13:03 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
CG8745-RA 26..2429 1..2404 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:40:26 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
CG8745-RA 6..2409 1..2404 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:08 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
CG8745-RA 26..2429 1..2404 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:56 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13860027..13861798 633..2404 100 <- Minus
3L 13861919..13862153 398..632 100 <- Minus
3L 13865317..13865435 279..397 100 <- Minus
3L 13866603..13866880 1..278 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:56 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13860027..13861798 633..2404 100 <- Minus
3L 13861919..13862153 398..632 100 <- Minus
3L 13865317..13865435 279..397 100 <- Minus
3L 13866603..13866880 1..278 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:56 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13860027..13861798 633..2404 100 <- Minus
3L 13861919..13862153 398..632 100 <- Minus
3L 13865317..13865435 279..397 100 <- Minus
3L 13866603..13866880 1..278 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:13:03 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13853127..13854898 633..2404 100 <- Minus
arm_3L 13855019..13855253 398..632 100 <- Minus
arm_3L 13858417..13858535 279..397 100 <- Minus
arm_3L 13859703..13859980 1..278 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:23:33 Download gff for LD09584.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13859703..13859980 1..278 100   Minus
3L 13853127..13854898 633..2404 100 <- Minus
3L 13855019..13855253 398..632 100 <- Minus
3L 13858417..13858535 279..397 100 <- Minus

LD09584.pep Sequence

Translation from 189 to 1673

> LD09584.pep
MPFAHEQLNLVASEQLSKTETIKLRNQHIGQACQLFYRSDPLKIVRGQGQ
YMFDEEGTRYLDCINNVAHVGHCHPEVVRAGALQMATISTNNRFLHDELV
QCARTLTSKMPEPLSVCFFVNSGSEANDLALRLARNFTKRQDVITLDHAY
HGHLQSVMEVSPYKFNQPGGEAKPDYVHVAPCPDVYGGKFTDKMYPDADM
GALYAQPIEEICQKQLAKGQGVAAFIAESLQSCGGQILPPAGYFQAVYDA
VRSAGGVCIADEVQVGFGRVGSHYWAFETQNVIPDIVCVAKPMGNGHPVG
AVVTTPEIAQAFHATGVAYFNTYGGNPVSCAIANAVMRVIEEEGLQQKAL
VLGDYLLEECNRLKQEFECIGDVRGAGLFVGIELVQDRKERIPDKKAAHW
VVNRMKQLHRVLVSSDGPNDNVIKLKPPMCFNRENADEFLLGFRECLTAV
MQERLASATSAAMAATSGVIATATETLANKTKLFERQDRLIKSV*

LD09584.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19062-PA 495 GF19062-PA 1..495 1..494 2436 90.9 Plus
Dana\GF23448-PA 466 GF23448-PA 32..465 35..454 754 39.3 Plus
Dana\Oat-PA 432 GF10718-PA 33..420 17..438 298 25.3 Plus
Dana\GF10831-PA 486 GF10831-PA 195..486 140..450 180 24.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13754-PA 494 GG13754-PA 1..494 1..494 2631 97.8 Plus
Dere\GG13171-PA 502 GG13171-PA 45..484 11..437 764 40.1 Plus
Dere\GG13385-PA 430 GG13385-PA 31..421 17..437 303 25.7 Plus
Dere\GG13352-PA 486 GG13352-PA 70..486 49..450 167 22.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17687-PA 495 GH17687-PA 1..495 1..494 2315 84.5 Plus
Dgri\GH14768-PA 503 GH14768-PA 74..484 41..436 756 40.9 Plus
Dgri\GH14619-PA 433 GH14619-PA 30..412 13..429 298 26.3 Plus
Dgri\GH24027-PA 433 GH24027-PA 30..412 13..429 297 26.3 Plus
Dgri\GH17185-PA 469 GH17185-PA 243..466 208..447 167 24.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8745-PA 494 CG8745-PA 1..494 1..494 2590 100 Plus
CG11241-PA 508 CG11241-PA 52..489 12..436 736 39.6 Plus
CG11241-PC 518 CG11241-PC 52..516 12..463 731 37.9 Plus
CG11241-PB 518 CG11241-PB 52..516 12..463 731 37.9 Plus
Oat-PA 431 CG8782-PA 49..422 37..437 297 25.9 Plus
Gabat-PD 486 CG7433-PD 198..486 143..450 158 23.8 Plus
Gabat-PC 486 CG7433-PC 198..486 143..450 158 23.8 Plus
Gabat-PA 486 CG7433-PA 198..486 143..450 158 23.8 Plus
Gabat-PB 486 CG7433-PB 198..486 143..450 158 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21508-PA 506 GI21508-PA 1..506 1..494 2297 84 Plus
Dmoj\GI11871-PA 491 GI11871-PA 39..471 17..435 759 40.2 Plus
Dmoj\GI13506-PA 431 GI13506-PA 32..413 17..432 291 26 Plus
Dmoj\GI13950-PA 469 GI13950-PA 49..469 46..450 181 22.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14846-PA 302 GL14846-PA 1..302 194..494 1343 84.1 Plus
Dper\GL14845-PA 194 GL14845-PA 1..185 1..183 875 89.2 Plus
Dper\GL18115-PA 495 GL18115-PA 58..475 17..435 723 38.8 Plus
Dper\GL20876-PA 433 GL20876-PA 51..415 37..432 300 26.5 Plus
Dper\GL11898-PA 487 GL11898-PA 261..487 208..450 163 25.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26338-PA 497 GA26338-PA 1..497 1..494 2373 88.7 Plus
Dpse\GA10859-PA 509 GA10859-PA 58..489 17..435 754 39.2 Plus
Dpse\GA21318-PA 433 GA21318-PA 36..415 19..432 318 26.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24577-PA 515 GM24577-PA 1..277 1..277 1499 98.9 Plus
Dsec\GM22081-PA 508 GM22081-PA 51..485 11..432 762 40.6 Plus
Dsec\GM24577-PA 515 GM24577-PA 387..515 366..494 672 99.2 Plus
Dsec\GM16950-PA 431 GM16950-PA 32..422 17..437 302 25.9 Plus
Dsec\GM14750-PA 486 GM14750-PA 195..486 140..450 174 24.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12648-PA 494 GD12648-PA 1..494 1..494 2662 99.6 Plus
Dsim\GD12056-PA 508 GD12056-PA 51..489 11..436 762 40.4 Plus
Dsim\GD12233-PA 486 GD12233-PA 195..486 140..450 168 24.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19045-PA 500 GJ19045-PA 1..500 1..494 2316 84.8 Plus
Dvir\GJ13565-PA 503 GJ13565-PA 51..483 17..435 761 40.4 Plus
Dvir\GJ11867-PA 433 GJ11867-PA 34..376 17..382 292 26.3 Plus
Dvir\GJ13734-PA 469 GJ13734-PA 49..469 46..450 175 21.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24849-PA 495 GK24849-PA 1..495 1..494 2248 83.8 Plus
Dwil\GK20568-PA 495 GK20568-PA 42..476 17..435 748 39.5 Plus
Dwil\GK25792-PA 428 GK25792-PA 46..410 37..432 285 25.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20050-PA 494 GE20050-PA 1..494 1..494 2629 98.2 Plus
Dyak\GE19492-PA 474 GE19492-PA 17..456 11..437 746 39.7 Plus
Dyak\GE22477-PA 430 GE22477-PA 31..421 17..437 301 25.2 Plus
Dyak\GE22444-PA 486 GE22444-PA 70..486 49..450 166 22.3 Plus

LD09584.hyp Sequence

Translation from 189 to 1673

> LD09584.hyp
MPFAHEQLNLVASEQLSKTETIKLRNQHIGQACQLFYRSDPLKIVRGQGQ
YMFDEEGTRYLDCINNVAHVGHCHPEVVRAGALQMATISTNNRFLHDELV
QCARTLTSKMPEPLSVCFFVNSGSEANDLALRLARNFTKRQDVITLDHAY
HGHLQSVMEVSPYKFNQPGGEAKPDYVHVAPCPDVYGGKFTDKMYPDADM
GALYAQPIEEICQKQLAKGQGVAAFIAESLQSCGGQILPPAGYFQAVYDA
VRSAGGVCIADEVQVGFGRVGSHYWAFETQNVIPDIVCVAKPMGNGHPVG
AVVTTPEIAQAFHATGVAYFNTYGGNPVSCAIANAVMRVIEEEGLQQKAL
VLGDYLLEECNRLKQEFECIGDVRGAGLFVGIELVQDRKERIPDKKAAHW
VVNRMKQLHRVLVSSDGPNDNVIKLKPPMCFNRENADEFLLGFRECLTAV
MQERLASATSAAMAATSGVIATATETLANKTKLFERQDRLIKSV*

LD09584.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8745-PA 494 CG8745-PA 1..494 1..494 2590 100 Plus
CG11241-PA 508 CG11241-PA 52..489 12..436 736 39.6 Plus
CG11241-PC 518 CG11241-PC 52..516 12..463 731 37.9 Plus
CG11241-PB 518 CG11241-PB 52..516 12..463 731 37.9 Plus
Oat-PA 431 CG8782-PA 49..422 37..437 297 25.9 Plus