Clone LD09680 Report

Search the DGRC for LD09680

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:96
Well:80
Vector:pBS SK-
Associated Gene/TranscriptCG7192-RA
Protein status:LD09680.pep: gold
Sequenced Size:2165

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7192 2003-01-01 Sim4 clustering to Release 3
CG7192 2004-10-13 Blastp of sequenced clone
CG7192 2008-04-29 Release 5.5 accounting
CG7192 2008-08-15 Release 5.9 accounting
CG7192 2008-12-18 5.12 accounting

Clone Sequence Records

LD09680.complete Sequence

2165 bp (2165 high quality bases) assembled on 2004-10-13

GenBank Submission: BT016115

> LD09680.complete
CTCCAACAAATCAGTGTATTTTTTGTTGTTCTTTGCCAAACAATAGAAGA
CGAACGTACTCGGAAGTAAATTAAACAAAATCGGGCGACCGGATCGGGCG
TTAATCGTTAATTGTTCAATTAAATGCAGCTTATTAGGCGCCGGGCTGCA
TAGTGCGATCGCAGAGTCACCGAGTGGACCGGGCCCCCTGGCGCTATAGT
CGCAATCCGAACCCGAATCGCTCCATCGGGAATCTTTAATTGTGAATCCG
AGCGATGAACAAAGTGGGCAAGCACATTCAAAGCGGCATCGGTGGAGCAC
CCAACGCGGCATTGTCCACGGCGGCTCTACTGGGTACTCCGCTGGAGGCG
ACCAATGGTGCTGGCTCGACCAGCACCACCAATGTATTCAATTCCATCAT
GAGCTTTCTGCCGGACAATCGACCCATCACCTCGCTGCACATCGTCGAGG
ATTTCGAGCGCTGCCCGAAGAACTTCAGTGCCATAAGCCGCACCTACGAC
CAGGATTCGGATGCGGACCTATGGCGCGACTACAGCCTGTTTGGACGCCA
GAACACACGCTACCTCTGCCTGTCCAAGTCCGAGGGCCTGCCGGAATACG
TGGTGGAGACCCTACAAGTGATTTCGGATAAAACGCCGCCGCCCAAGGAA
TTCTCGCAGGTCTCCCGCACTGCCGATAGCGACCAGAAGGCCTGGCGCAA
GCGGCAGTTGATCTACAAGCTCTCCAAGCGCGGCACTGTGACCCAGGCGG
TCACCGACATAATACTCTGCTCCAAGTTGAAGGCAGCGCCCGATGGCTTT
AAGCTGGCCGGCGATATCAACGGAGTGCTTATCTGCTACAAAACCAGCGC
GATCCCAGTGCGCCTTTCGCCGCCAGTGCCAGGTGGAGGATTGCCAGCTC
CAGCCACTTGCGAGGTGGAGCAGGCCCTGAACCGCCTGAATCTCCAGGGT
CAACGCAACTCACGTGGACCACTGCCACAACCGCCGACTGAACACCATGA
CTATGAGGAGATCCAAGCCAACTATCAAATAAACTCGCCACAGCGACCGG
CGCCACCGCGGCCAGCGGGAGTGGGTTCTGGCGGAGGACACGGTACTTAC
GGCGGAACGGGCACCTTGGGCACCTACACCGAGCTGGAGGGAGTGCCTTT
CGTCATGGACGTTAGGCTGCAGCGCAACCAAGCTGTGAATGATATACCTA
CACTGCCAGAAATCTCTACGCTGCTCAAGTCCCTGGACTATGACTTTCAG
CTGGAACGTCAGATCTTGTGCACCATGAAGTCATCGGCATCTAAGAACCC
GTTCTTTAAGTAATATTCGCAAACTTTCAACAGAAGCGTCGCAAATTGAT
GGTTGGGCAAATGTAAACAGCATGGCAAAAGAACCGGAAATGAGTGGATT
TTATATTTAGTTTAACGTAATCGCAAATAGATGCGCGTGTGGCAGCTGCC
ATGGTTAACCCAGTAGTTATTCAGTTGGTATTAAGTTCTGAGGACCCCGG
CCCCTTAGAGTAAAATGTGTGTAATATTCCTGTGCCTTCGATATGTATCT
AATTTGGATGCTCGCCCGAGCAATCAAACACCTCAGTTTCGTAGAACCCC
TCATTGGAAAGCAACCGAATCAGAATCCTACCTATTTACATCATAGATAT
CATTCATATACATACATGCATCGATTAACCCCAAATCAAATTGTGATCAA
AGGAGCGAGCGCAATGTTTTGTCATTAATTTAAAGGCGCTACATCAGATG
GCTCATTCGCATATGTATTTCGAAAGGCCGACGCATAAGATACATGTACA
TACATGTGTATACACCTATGTTAATGTTGAATAAAGTCCAGAATGCGGAC
TAAAGCTAATATAAACCTAGTACATACAAGCATATATCTAATATATATAT
ATATATACACGTTTATAGGCCACATAGCACTTAAAACCAGTTGGTTTTTA
AAAACATATATCTATTACATATTAGCTCTAGTGACGATTAGACTGTATTG
CAAAATCATAGATTCTTCCCAGCTGCCTCCGTCCCCGTCATCCGCATTCC
CAGCTCCTTTTCGCCCCTCTTCCTCCAAAAAATACCCCACCATGTTATAT
AGCAGTTCAAATACAAGAAAAAAATATATATACGCCACTGAAAATACAAA
AAAAAAAAAAAAAAA

LD09680.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7192.b 2313 CG7192.b 73..2221 1..2149 10745 100 Plus
CG7192.d 2048 CG7192.d 42..2048 130..2136 10035 100 Plus
CG7192-RA 1983 CG7192-RA 73..1983 1..1911 9555 100 Plus
CG7192.d 2048 CG7192.d 1..41 25..65 205 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17986873..17987826 2147..1194 4770 100 Minus
chrX 22417052 chrX 17988183..17988537 971..617 1775 100 Minus
chrX 22417052 chrX 17990405..17990648 244..1 1205 99.6 Minus
chrX 22417052 chrX 17987894..17988115 1193..972 1110 100 Minus
chrX 22417052 chrX 17988821..17989037 460..244 1085 100 Minus
chrX 22417052 chrX 17988602..17988758 616..460 785 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:55:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18097556..18098511 2149..1194 4780 100 Minus
X 23542271 X 18098868..18099222 971..617 1775 100 Minus
X 23542271 X 18101092..18101335 244..1 1220 100 Minus
X 23542271 X 18098579..18098800 1193..972 1110 100 Minus
X 23542271 X 18099506..18099722 460..244 1085 100 Minus
X 23542271 X 18099287..18099443 616..460 785 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18105654..18106609 2149..1194 4780 100 Minus
X 23527363 X 18106966..18107320 971..617 1775 100 Minus
X 23527363 X 18109190..18109433 244..1 1220 100 Minus
X 23527363 X 18106677..18106898 1193..972 1110 100 Minus
X 23527363 X 18107604..18107820 460..244 1085 100 Minus
X 23527363 X 18107385..18107541 616..460 785 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:23:04 has no hits.

LD09680.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:23:57 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17987894..17988115 972..1193 100 <- Minus
chrX 17986873..17987826 1194..2147 95 <- Minus
chrX 17988183..17988537 617..971 100 <- Minus
chrX 17988602..17988757 461..616 100 <- Minus
chrX 17988821..17989037 244..460 100 <- Minus
chrX 17990406..17990648 1..243 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:42:46 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
CG7192-RB 1..1059 255..1313 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:30:39 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
CG7192-RB 1..1059 255..1313 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:01:33 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
CG7192-RA 1..1059 255..1313 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:14:31 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
CG7192-RB 1..1059 255..1313 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:29:12 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
CG7192-RA 1..1059 255..1313 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:35:06 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
CG7192-RA 1..1870 2..1871 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:30:39 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
CG7192-RA 1..1870 2..1871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:01:33 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
CG7192-RA 1..2126 22..2147 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:14:31 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
CG7192-RA 1..1870 2..1871 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:29:12 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
CG7192-RA 1..2126 22..2147 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:23:57 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
X 18097558..18098511 1194..2147 100 <- Minus
X 18098579..18098800 972..1193 100 <- Minus
X 18098868..18099222 617..971 100 <- Minus
X 18099287..18099442 461..616 100 <- Minus
X 18099506..18099722 244..460 100 <- Minus
X 18101093..18101335 1..243 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:23:57 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
X 18097558..18098511 1194..2147 100 <- Minus
X 18098579..18098800 972..1193 100 <- Minus
X 18098868..18099222 617..971 100 <- Minus
X 18099287..18099442 461..616 100 <- Minus
X 18099506..18099722 244..460 100 <- Minus
X 18101093..18101335 1..243 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:23:57 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
X 18097558..18098511 1194..2147 100 <- Minus
X 18098579..18098800 972..1193 100 <- Minus
X 18098868..18099222 617..971 100 <- Minus
X 18099287..18099442 461..616 100 <- Minus
X 18099506..18099722 244..460 100 <- Minus
X 18101093..18101335 1..243 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:01:33 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17991591..17992544 1194..2147 100 <- Minus
arm_X 17992612..17992833 972..1193 100 <- Minus
arm_X 17992901..17993255 617..971 100 <- Minus
arm_X 17993320..17993475 461..616 100 <- Minus
arm_X 17993539..17993755 244..460 100 <- Minus
arm_X 17995126..17995368 1..243 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:51:22 Download gff for LD09680.complete
Subject Subject Range Query Range Percent Splice Strand
X 18109191..18109433 1..243 100   Minus
X 18105656..18106609 1194..2147 100 <- Minus
X 18106677..18106898 972..1193 100 <- Minus
X 18106966..18107320 617..971 100 <- Minus
X 18107385..18107540 461..616 100 <- Minus
X 18107604..18107820 244..460 100 <- Minus

LD09680.pep Sequence

Translation from 254 to 1312

> LD09680.pep
MNKVGKHIQSGIGGAPNAALSTAALLGTPLEATNGAGSTSTTNVFNSIMS
FLPDNRPITSLHIVEDFERCPKNFSAISRTYDQDSDADLWRDYSLFGRQN
TRYLCLSKSEGLPEYVVETLQVISDKTPPPKEFSQVSRTADSDQKAWRKR
QLIYKLSKRGTVTQAVTDIILCSKLKAAPDGFKLAGDINGVLICYKTSAI
PVRLSPPVPGGGLPAPATCEVEQALNRLNLQGQRNSRGPLPQPPTEHHDY
EEIQANYQINSPQRPAPPRPAGVGSGGGHGTYGGTGTLGTYTELEGVPFV
MDVRLQRNQAVNDIPTLPEISTLLKSLDYDFQLERQILCTMKSSASKNPF
FK*

LD09680.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19522-PA 356 GF19522-PA 1..356 1..352 1388 82.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18143-PA 352 GG18143-PA 1..352 1..352 1825 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17939-PA 377 GH17939-PA 1..377 1..352 1182 67.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Mvb12-PD 352 CG7192-PD 1..352 1..352 1844 100 Plus
Mvb12-PB 352 CG7192-PB 1..352 1..352 1844 100 Plus
Mvb12-PA 352 CG7192-PA 1..352 1..352 1844 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15409-PA 364 GI15409-PA 1..364 1..352 1308 73.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14911-PA 192 GL14911-PA 70..192 230..352 362 77 Plus
Dper\GL14911-PA 192 GL14911-PA 1..89 1..83 219 58.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20171-PA 365 GA20171-PA 1..365 1..352 1369 80.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22836-PA 350 GM22836-PA 1..350 1..352 1826 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24483-PA 442 GD24483-PA 1..310 1..312 1617 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16368-PA 359 GJ16368-PA 1..359 1..352 1303 72.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17889-PA 372 GK17889-PA 1..372 1..352 1333 73.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15553-PA 352 GE15553-PA 1..352 1..352 1841 97.7 Plus

LD09680.hyp Sequence

Translation from 254 to 1312

> LD09680.hyp
MNKVGKHIQSGIGGAPNAALSTAALLGTPLEATNGAGSTSTTNVFNSIMS
FLPDNRPITSLHIVEDFERCPKNFSAISRTYDQDSDADLWRDYSLFGRQN
TRYLCLSKSEGLPEYVVETLQVISDKTPPPKEFSQVSRTADSDQKAWRKR
QLIYKLSKRGTVTQAVTDIILCSKLKAAPDGFKLAGDINGVLICYKTSAI
PVRLSPPVPGGGLPAPATCEVEQALNRLNLQGQRNSRGPLPQPPTEHHDY
EEIQANYQINSPQRPAPPRPAGVGSGGGHGTYGGTGTLGTYTELEGVPFV
MDVRLQRNQAVNDIPTLPEISTLLKSLDYDFQLERQILCTMKSSASKNPF
FK*

LD09680.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7192-PD 352 CG7192-PD 1..352 1..352 1844 100 Plus
CG7192-PB 352 CG7192-PB 1..352 1..352 1844 100 Plus
CG7192-PA 352 CG7192-PA 1..352 1..352 1844 100 Plus