BDGP Sequence Production Resources |
Search the DGRC for LD09790
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 97 |
Well: | 90 |
Vector: | pBS SK- |
Associated Gene/Transcript | Paf-AHalpha-RA |
Protein status: | LD09790.pep: gold |
Preliminary Size: | 1587 |
Sequenced Size: | 1443 |
Gene | Date | Evidence |
---|---|---|
CG8962 | 2001-11-09 | Blastp of sequenced clone |
CG8962 | 2003-01-01 | Sim4 clustering to Release 3 |
Paf-AHalpha | 2008-04-29 | Release 5.5 accounting |
Paf-AHalpha | 2008-08-15 | Release 5.9 accounting |
Paf-AHalpha | 2008-12-18 | 5.12 accounting |
1443 bp (1443 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069389
> LD09790.complete AAAATCGTAGATTTTCTACACCAAATTAAAATAAACTTATAAAAATTTTC AACCTTAAATCCTTGGCAATTTCCATGTACACGAGGGTGGCCACATAATT CTACGACATTTACGGATGTTAATGTTGAGGTAACCTAAAACACAAAAAAA AAAAAACAAAAAAAAAATCTTCGCCATAAAAACGATTTATTAAAGTAAAC AACGGTACGGAGTTGTTTATGCTAGCGACTATCAGTTCAATTGTTTGTCC ACGACTGCAACGCTGTCACTGCAAGCCGAGCAGAACGCCCAAGTATCCGG TAAGACTAAGCCGCAGACGATGCCTCATTCATCCGCATGCTGAAACTGCA ACTGAATCGAAATCGAAATAGGAATAGGAATCGGAATCTTTAACTAAAAC TCAATATTGGTCTGCAACTGAGTCTGAGCACGCCGACGAAATGAATCCCT GTGTGCTGCCCACCCCATTGCCCGATCTGGATGGCGACAAGCGTTGGCAC AGCATACATCGCCGGTTCATCTCCGATTGCCGCGAAAAGGATCCGGATGT GATATTCCTCGGCGACTGCATCTTCGAGACCGTCCAGGACACGGAGGCCT GGAATAAGTACTTTGCGCCGCTGCACTGCCTTAACTTCAGCATTCGCGAC GACTGCACCGAGCACGTACTGTGGCGCATCGAAAACGGTGCGCTGGACAA TGTGAATCCCAAAATCGTCGTCCTCCATGTGGGCACCAATAATGTGCGGA ACAGCGCGGAGGAAGTGGCCGAGGGTGTGCTCGCGAACGTAACGAAAATC CGGCAAAAGCTGCCCAACGCCTATATCGTTTTGCCCTCGCTACTGCCGCG TGGCCAGCAGCCCAATAAGTTGCGCGAAAAGAATGCCAAAATCAACGAGG TGGTCAATGGATTGACCAAGGGCTTGTATCGCGTCCAGACGGTGGCCATT GACAAGGGTTTGGTCCAGACCGACGGCAGTATCAGTCATCACGATATGTT CGACTATAAAAATCTAACCAATGCTGGAGCGAAAAAGATATTAGAACCAC TCTACGATCTGCTTTCTCAAATTCTCAACGAAAACGAACCTGAAAACGAT CTCACCCCCTCCGAATAAAAGGAATATCCAGCAGCTATCCATTATATATA TACATACATGCATACATACACACATACATATACCACAAACAATTCCCAGA ATATAACTTAAAACCAGAAATGTATTTTTTGAAATCTCATAAGCTATAGA GCTGCGAGACTAACTCACAATTAAGCATACATTTTTCGTATCGAATAGTA AACCATCGCATATACCATTGCATTATGATATTATTTTACATTGTATTTAT AAGAAAAGAAAAAAAACCGAAATGACTGTCATTGGGTAAAATAGAAGTTA TCTTCAAGCATCAGACATTCATGGAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Paf-AHalpha-RA | 1678 | Paf-AHalpha-RA | 101..1525 | 1..1425 | 7125 | 100 | Plus |
Paf-AHalpha.f | 1653 | Paf-AHalpha.f | 208..1439 | 194..1425 | 6160 | 100 | Plus |
Paf-AHalpha.b | 1622 | Paf-AHalpha.b | 352..1583 | 194..1425 | 6160 | 100 | Plus |
Paf-AHalpha.f | 1653 | Paf-AHalpha.f | 81..209 | 1..129 | 645 | 100 | Plus |
Paf-AHalpha.b | 1622 | Paf-AHalpha.b | 225..353 | 1..129 | 645 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15674529..15675364 | 836..1 | 4180 | 100 | Minus |
chrX | 22417052 | chrX | 15673873..15674460 | 1424..837 | 2880 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 5646827..5646967 | 18..164 | 340 | 83.7 | Plus |
chrX | 22417052 | chrX | 16676421..16676557 | 153..8 | 300 | 83.6 | Minus |
chr2L | 23010047 | chr2L | 20899473..20899543 | 119..49 | 265 | 91.5 | Minus |
chrX | 22417052 | chrX | 8298905..8298972 | 76..9 | 250 | 91.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 15784665..15785500 | 836..1 | 4180 | 100 | Minus |
X | 23542271 | X | 15784008..15784596 | 1425..837 | 2945 | 100 | Minus |
2R | 25286936 | 2R | 9759390..9759530 | 18..164 | 340 | 83.7 | Plus |
X | 23542271 | X | 16786787..16786923 | 153..8 | 300 | 83.6 | Minus |
2L | 23513712 | 2L | 20900938..20901008 | 119..49 | 265 | 91.5 | Minus |
X | 23542271 | X | 8407158..8407225 | 76..9 | 250 | 91.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 15792763..15793598 | 836..1 | 4180 | 100 | Minus |
X | 23527363 | X | 15792106..15792694 | 1425..837 | 2945 | 100 | Minus |
2R | 25260384 | 2R | 9760589..9760683 | 18..112 | 310 | 88.4 | Plus |
2L | 23513712 | 2L | 20900938..20901008 | 119..49 | 265 | 91.5 | Minus |
X | 23527363 | X | 16794913..16794984 | 119..48 | 255 | 90.2 | Minus |
X | 23527363 | X | 8415256..8415323 | 76..9 | 250 | 91.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 4785..4947 | 8..163 | 225 | 65.7 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 6317..6568 | 1137..1400 | 119 | 54.5 | Plus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 6686..6861 | 1178..1357 | 116 | 54.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15673873..15674460 | 837..1424 | 92 | <- | Minus |
chrX | 15674529..15675364 | 1..836 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Paf-AHalpha-RB | 1..678 | 441..1118 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Paf-AHalpha-RB | 1..678 | 441..1118 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Paf-AHalpha-RA | 1..678 | 441..1118 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Paf-AHalpha-RB | 1..678 | 441..1118 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Paf-AHalpha-RA | 1..678 | 441..1118 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Paf-AHalpha-RA | 80..1503 | 1..1424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Paf-AHalpha-RA | 80..1503 | 1..1424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Paf-AHalpha-RA | 84..1507 | 1..1424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Paf-AHalpha-RA | 80..1503 | 1..1424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Paf-AHalpha-RA | 84..1507 | 1..1424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15784009..15784596 | 837..1424 | 100 | <- | Minus |
X | 15784665..15785500 | 1..836 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15784009..15784596 | 837..1424 | 100 | <- | Minus |
X | 15784665..15785500 | 1..836 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15784009..15784596 | 837..1424 | 100 | <- | Minus |
X | 15784665..15785500 | 1..836 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15678042..15678629 | 837..1424 | 100 | <- | Minus |
arm_X | 15678698..15679533 | 1..836 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15792107..15792694 | 837..1424 | 100 | <- | Minus |
X | 15792763..15793598 | 1..836 | 100 | Minus |
Translation from 440 to 1117
> LD09790.hyp MNPCVLPTPLPDLDGDKRWHSIHRRFISDCREKDPDVIFLGDCIFETVQD TEAWNKYFAPLHCLNFSIRDDCTEHVLWRIENGALDNVNPKIVVLHVGTN NVRNSAEEVAEGVLANVTKIRQKLPNAYIVLPSLLPRGQQPNKLREKNAK INEVVNGLTKGLYRVQTVAIDKGLVQTDGSISHHDMFDYKNLTNAGAKKI LEPLYDLLSQILNENEPENDLTPSE*
Translation from 440 to 1117
> LD09790.pep MNPCVLPTPLPDLDGDKRWHSIHRRFISDCREKDPDVIFLGDCIFETVQD TEAWNKYFAPLHCLNFSIRDDCTEHVLWRIENGALDNVNPKIVVLHVGTN NVRNSAEEVAEGVLANVTKIRQKLPNAYIVLPSLLPRGQQPNKLREKNAK INEVVNGLTKGLYRVQTVAIDKGLVQTDGSISHHDMFDYKNLTNAGAKKI LEPLYDLLSQILNENEPENDLTPSE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19372-PA | 225 | GG19372-PA | 1..225 | 1..225 | 1183 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12532-PA | 225 | GH12532-PA | 1..225 | 1..225 | 1057 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Paf-AHalpha-PB | 225 | CG8962-PB | 1..225 | 1..225 | 1199 | 100 | Plus |
Paf-AHalpha-PA | 225 | CG8962-PA | 1..225 | 1..225 | 1199 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11194-PA | 225 | GI11194-PA | 1..225 | 1..225 | 1012 | 83.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19981-PA | 225 | GL19981-PA | 1..225 | 1..225 | 1054 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21438-PA | 225 | GA21438-PA | 1..225 | 1..225 | 1052 | 86.7 | Plus |
Dpse\GA25538-PA | 71 | GA25538-PA | 1..46 | 1..48 | 205 | 79.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22526-PA | 225 | GM22526-PA | 1..225 | 1..225 | 1184 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15777-PA | 225 | GD15777-PA | 1..225 | 1..225 | 1187 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18477-PA | 225 | GJ18477-PA | 1..225 | 1..225 | 1031 | 85.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24937-PA | 225 | GK24937-PA | 1..225 | 1..225 | 1062 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16020-PA | 225 | GE16020-PA | 1..225 | 1..225 | 1182 | 98.2 | Plus |