Clone LD09790 Report

Search the DGRC for LD09790

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:97
Well:90
Vector:pBS SK-
Associated Gene/TranscriptPaf-AHalpha-RA
Protein status:LD09790.pep: gold
Preliminary Size:1587
Sequenced Size:1443

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8962 2001-11-09 Blastp of sequenced clone
CG8962 2003-01-01 Sim4 clustering to Release 3
Paf-AHalpha 2008-04-29 Release 5.5 accounting
Paf-AHalpha 2008-08-15 Release 5.9 accounting
Paf-AHalpha 2008-12-18 5.12 accounting

Clone Sequence Records

LD09790.complete Sequence

1443 bp (1443 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069389

> LD09790.complete
AAAATCGTAGATTTTCTACACCAAATTAAAATAAACTTATAAAAATTTTC
AACCTTAAATCCTTGGCAATTTCCATGTACACGAGGGTGGCCACATAATT
CTACGACATTTACGGATGTTAATGTTGAGGTAACCTAAAACACAAAAAAA
AAAAAACAAAAAAAAAATCTTCGCCATAAAAACGATTTATTAAAGTAAAC
AACGGTACGGAGTTGTTTATGCTAGCGACTATCAGTTCAATTGTTTGTCC
ACGACTGCAACGCTGTCACTGCAAGCCGAGCAGAACGCCCAAGTATCCGG
TAAGACTAAGCCGCAGACGATGCCTCATTCATCCGCATGCTGAAACTGCA
ACTGAATCGAAATCGAAATAGGAATAGGAATCGGAATCTTTAACTAAAAC
TCAATATTGGTCTGCAACTGAGTCTGAGCACGCCGACGAAATGAATCCCT
GTGTGCTGCCCACCCCATTGCCCGATCTGGATGGCGACAAGCGTTGGCAC
AGCATACATCGCCGGTTCATCTCCGATTGCCGCGAAAAGGATCCGGATGT
GATATTCCTCGGCGACTGCATCTTCGAGACCGTCCAGGACACGGAGGCCT
GGAATAAGTACTTTGCGCCGCTGCACTGCCTTAACTTCAGCATTCGCGAC
GACTGCACCGAGCACGTACTGTGGCGCATCGAAAACGGTGCGCTGGACAA
TGTGAATCCCAAAATCGTCGTCCTCCATGTGGGCACCAATAATGTGCGGA
ACAGCGCGGAGGAAGTGGCCGAGGGTGTGCTCGCGAACGTAACGAAAATC
CGGCAAAAGCTGCCCAACGCCTATATCGTTTTGCCCTCGCTACTGCCGCG
TGGCCAGCAGCCCAATAAGTTGCGCGAAAAGAATGCCAAAATCAACGAGG
TGGTCAATGGATTGACCAAGGGCTTGTATCGCGTCCAGACGGTGGCCATT
GACAAGGGTTTGGTCCAGACCGACGGCAGTATCAGTCATCACGATATGTT
CGACTATAAAAATCTAACCAATGCTGGAGCGAAAAAGATATTAGAACCAC
TCTACGATCTGCTTTCTCAAATTCTCAACGAAAACGAACCTGAAAACGAT
CTCACCCCCTCCGAATAAAAGGAATATCCAGCAGCTATCCATTATATATA
TACATACATGCATACATACACACATACATATACCACAAACAATTCCCAGA
ATATAACTTAAAACCAGAAATGTATTTTTTGAAATCTCATAAGCTATAGA
GCTGCGAGACTAACTCACAATTAAGCATACATTTTTCGTATCGAATAGTA
AACCATCGCATATACCATTGCATTATGATATTATTTTACATTGTATTTAT
AAGAAAAGAAAAAAAACCGAAATGACTGTCATTGGGTAAAATAGAAGTTA
TCTTCAAGCATCAGACATTCATGGAAAAAAAAAAAAAAAAAAA

LD09790.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
Paf-AHalpha-RA 1678 Paf-AHalpha-RA 101..1525 1..1425 7125 100 Plus
Paf-AHalpha.f 1653 Paf-AHalpha.f 208..1439 194..1425 6160 100 Plus
Paf-AHalpha.b 1622 Paf-AHalpha.b 352..1583 194..1425 6160 100 Plus
Paf-AHalpha.f 1653 Paf-AHalpha.f 81..209 1..129 645 100 Plus
Paf-AHalpha.b 1622 Paf-AHalpha.b 225..353 1..129 645 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15674529..15675364 836..1 4180 100 Minus
chrX 22417052 chrX 15673873..15674460 1424..837 2880 99.3 Minus
chr2R 21145070 chr2R 5646827..5646967 18..164 340 83.7 Plus
chrX 22417052 chrX 16676421..16676557 153..8 300 83.6 Minus
chr2L 23010047 chr2L 20899473..20899543 119..49 265 91.5 Minus
chrX 22417052 chrX 8298905..8298972 76..9 250 91.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15784665..15785500 836..1 4180 100 Minus
X 23542271 X 15784008..15784596 1425..837 2945 100 Minus
2R 25286936 2R 9759390..9759530 18..164 340 83.7 Plus
X 23542271 X 16786787..16786923 153..8 300 83.6 Minus
2L 23513712 2L 20900938..20901008 119..49 265 91.5 Minus
X 23542271 X 8407158..8407225 76..9 250 91.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15792763..15793598 836..1 4180 100 Minus
X 23527363 X 15792106..15792694 1425..837 2945 100 Minus
2R 25260384 2R 9760589..9760683 18..112 310 88.4 Plus
2L 23513712 2L 20900938..20901008 119..49 265 91.5 Minus
X 23527363 X 16794913..16794984 119..48 255 90.2 Minus
X 23527363 X 8415256..8415323 76..9 250 91.1 Minus
Blast to na_te.dros performed 2019-03-16 21:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 4785..4947 8..163 225 65.7 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 6317..6568 1137..1400 119 54.5 Plus
Stalker4 7359 Stalker4 STALKER4 7359bp 6686..6861 1178..1357 116 54.9 Plus

LD09790.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:40:04 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15673873..15674460 837..1424 92 <- Minus
chrX 15674529..15675364 1..836 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:42:55 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RB 1..678 441..1118 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:59 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RB 1..678 441..1118 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:03:58 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RA 1..678 441..1118 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:34 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RB 1..678 441..1118 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:42 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RA 1..678 441..1118 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:43 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RA 80..1503 1..1424 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:59 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RA 80..1503 1..1424 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:58 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RA 84..1507 1..1424 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:34 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RA 80..1503 1..1424 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:42 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
Paf-AHalpha-RA 84..1507 1..1424 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:40:04 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
X 15784009..15784596 837..1424 100 <- Minus
X 15784665..15785500 1..836 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:40:04 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
X 15784009..15784596 837..1424 100 <- Minus
X 15784665..15785500 1..836 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:40:04 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
X 15784009..15784596 837..1424 100 <- Minus
X 15784665..15785500 1..836 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:58 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15678042..15678629 837..1424 100 <- Minus
arm_X 15678698..15679533 1..836 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:54 Download gff for LD09790.complete
Subject Subject Range Query Range Percent Splice Strand
X 15792107..15792694 837..1424 100 <- Minus
X 15792763..15793598 1..836 100   Minus

LD09790.hyp Sequence

Translation from 440 to 1117

> LD09790.hyp
MNPCVLPTPLPDLDGDKRWHSIHRRFISDCREKDPDVIFLGDCIFETVQD
TEAWNKYFAPLHCLNFSIRDDCTEHVLWRIENGALDNVNPKIVVLHVGTN
NVRNSAEEVAEGVLANVTKIRQKLPNAYIVLPSLLPRGQQPNKLREKNAK
INEVVNGLTKGLYRVQTVAIDKGLVQTDGSISHHDMFDYKNLTNAGAKKI
LEPLYDLLSQILNENEPENDLTPSE*

LD09790.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Paf-AHalpha-PB 225 CG8962-PB 1..225 1..225 1199 100 Plus
Paf-AHalpha-PA 225 CG8962-PA 1..225 1..225 1199 100 Plus

LD09790.pep Sequence

Translation from 440 to 1117

> LD09790.pep
MNPCVLPTPLPDLDGDKRWHSIHRRFISDCREKDPDVIFLGDCIFETVQD
TEAWNKYFAPLHCLNFSIRDDCTEHVLWRIENGALDNVNPKIVVLHVGTN
NVRNSAEEVAEGVLANVTKIRQKLPNAYIVLPSLLPRGQQPNKLREKNAK
INEVVNGLTKGLYRVQTVAIDKGLVQTDGSISHHDMFDYKNLTNAGAKKI
LEPLYDLLSQILNENEPENDLTPSE*

LD09790.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19372-PA 225 GG19372-PA 1..225 1..225 1183 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12532-PA 225 GH12532-PA 1..225 1..225 1057 87.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
Paf-AHalpha-PB 225 CG8962-PB 1..225 1..225 1199 100 Plus
Paf-AHalpha-PA 225 CG8962-PA 1..225 1..225 1199 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11194-PA 225 GI11194-PA 1..225 1..225 1012 83.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19981-PA 225 GL19981-PA 1..225 1..225 1054 86.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21438-PA 225 GA21438-PA 1..225 1..225 1052 86.7 Plus
Dpse\GA25538-PA 71 GA25538-PA 1..46 1..48 205 79.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22526-PA 225 GM22526-PA 1..225 1..225 1184 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15777-PA 225 GD15777-PA 1..225 1..225 1187 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18477-PA 225 GJ18477-PA 1..225 1..225 1031 85.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24937-PA 225 GK24937-PA 1..225 1..225 1062 86.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16020-PA 225 GE16020-PA 1..225 1..225 1182 98.2 Plus