Clone LD09848 Report

Search the DGRC for LD09848

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:98
Well:48
Vector:pBS SK-
Associated Gene/TranscriptItgbetanu-RA
Protein status:LD09848.pep: gold
Preliminary Size:3085
Sequenced Size:3157

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1762 2007-09-25 DGC5 pick
CG1762 2007-09-25 DGC5 pick
betaInt-nu 2008-04-29 Release 5.5 accounting
betaInt-nu 2008-04-29 Picked prior to 5.5
betaInt-nu 2008-08-15 Release 5.9 accounting
betaInt-nu 2008-12-18 5.12 accounting

Clone Sequence Records

LD09848.complete Sequence

3157 bp assembled on 2007-12-03

GenBank Submission: BT031252

> LD09848.complete
GACTTCTAAGGCCGAACGGTCGCTAGCTCCCTTAGCAAAAAAAATATATG
TGATCGTTGGTAGTGAAAATTGCACGCATTTTGAAAATGACGTCACTGGG
CGGAAGGGCGTTCTTGTGGATATATTTGGTTTTTCTAATAGCTGAGATCT
CTCATTCGGATGCAGATTCAATTGATGATCAGTGCAGGCACGCAGACAGC
TGCGAAAGATGTTTATCCGCTCATCTGGAATGCGCTTGGTGCACGGACAA
GGAATACCAGGTGGGATATCGTTGTCTCTCTCGCCGGCAACTACTTAACT
ACAACTGCAGTGAAACGGATATATACGAGAACCAGCCGGTCCTAGATGTC
CTTCAGGATAAGCCCCTAAAGGACTACGAAACCAGTGATCAGGCTGTCCA
AGTCACACCCCAGCGGGCATACCTTAAGTTGGTCAAAGGAAACACGCAAA
GAATGAAGCTGAGCTATAGAACTGCACGCAACAATCCACTCGATTTGTAC
GTATTGATGGATCTAACCTGGACAATGAGGGATGACAAGAAAACCCTGGA
GGAGTTGGGAGCCCAACTCAGTCAGACTCTTAAAAATCTAACAGGAAACT
ACAGATTGGGATTTGGTTCTTTCGCGGACAAGCCAACTCTACCCATGATT
CTGCCACAGCATAGGGAAAACCCCTGTGCTGCGGAGCGGGCCACGTGTGA
ACCAACCTATGGATATAGACATCAACTTTCGCTAACCGATGATATACCAG
CGTTCACCTCAGCCGTGGCGAACAGCAAAATCACTGGAAACTTGGACAAT
CTCGAAGGTGGCTTGGATGCTCTAATGCAGGTTATAGTGTGCACCAAGGA
AATCGGCTGGAAGGAACAAGCTCGAAAAGTGGTGATCTTAGTGACCGATG
GCTTTATGCACTTAGCGGGGGACGGTCTTCTAGCAGGTATTATCCAGCGC
AATGATAAGCAGTGTCACCTGAATAAAGCAGGTGAGTACACGGGTTCATT
GAACTACGACTACCCCTCGCTGGAAGAAATCTATCGGGAGTTGCTTCGTC
GCAAGATTAATGTAATCTTTGCTGTCACCGAGGAGGTTGTAAGTAGCTAT
TGGGAACTCAGTGCCCTAATGAAGGAAATTAGTTACGTGGACATCCTAAG
TGCTGATTCCTCTAATATATTGGAACTAATCAAAAAGAGCTATGAGAGTT
TGATTAAACGCACTCAGTTTGCCGATAACAGCCCGGATTTTATTGACATG
GCTTACTATACGGATTGCGGTGGTCAGTTTCCCAGCTTACAAAAGCGGAA
TTACTGCAATAACGTCACTCTGGGCAAGCAGATTGATTTCTACGTGGACG
TCACTCTCAAGAAATATCCCGATAATCAGGTTTATACACACAAAATCCGG
GTGGAGGAAACCTCCTTGAGCGAGTTCATGGATTTGGATGTTGAGCTTCA
GCGGCCGTGTCCCTGTCAGGAAACACCAGATCCGGAAAACGAGGAAGGAC
GTTTCCTGTGCGATTATAAGGGCTATTTGTACTGCGGAATGTGCGAATGC
GATGAGGGGTGGACTGGGACCTATTGCAACTGTCCCACAGATGCCACAAA
TGTCACCAGCAATGAAGCTCTGCTCCAGAAATGCCGTCAACCGTTTTCGG
ATAAATCCACCTCCGAATTGGTTTGCTCCAATCACGGGGACTGTGACTGC
GGAACTTGCTTGTGTGATCCTGGATATACGGGTCCTTTTTGCGAGTGTCG
CGAATGCCTGGACTGCGATGAAAAGCTGGCTGATTGTTTCTGCGGCCAAT
GCGTTTGCAAATACGGATGGTCGGGTAGCAAATGCAACTGCGATGGGGAT
ACCGATGCCTGTGTGGGACCCACGGGCGAAATATGCTCGGAAAGAGGCAC
CTGCCAGTGCGAGGAGTGCCAGTGTGAGGAGCCGTATTTGGGTAAATTCT
GTGAAATCGATCCAGAGAAGGACAACAAACTTTGTTTGTTCTACGAGCCC
TGTGTCACATGTCTGATCGAGCAAAAACAGGGAATGGGCGTCTGCGAAAA
CTTGACTGAAATATGCAGCAGTTTGGATAGACAAGAAACCTATCCATACA
ACTTTGTCCACGAGCTGGATCCTGAGCAGGATCAATGCTTGGTACGACTG
GTGAACAAACATGGCATCCAATGCGACAGCTTCTTCGTCTATCAGGTCAT
CGACCACTCAAACTTCTTGACCATCCAGGCAGTTGATTGCGAGCCCCCGG
ATTACGTGGCTCTGGTGGGATATATATCGGCATTTACGCTGCTCATTGGA
CTTTTGATCATTTTCATAATTCTGTGGTACATTCGAGCTAAGGATGCCAG
GGAATATGCCAAGTTTGAGGAAGATCAGAAGAATAGTGTCCGACAGGAGA
ATCCAATTTACAGGGATCCAGTGGGTAGATATGAAGTGCCCAAGGCGCTA
AGTGTTAAGTATGATGAGAATCCTTTCGCAAGTTAACATGAAAAATGTTT
TTTTTTTAAGATATTAGATTGTACTTTGACTTAAAATTTTCTTCAAAATT
TGTGTATACCCGTTACTCGTAGAGTGAAATTATACACTAGATTCGCGTTG
AAAAGTATGTAACCGGTAGAAGTAAGCGTTTCCGTTCATATTTTAGTTTT
AGTTTATTTTCTTGATCACAATACATAGCCGAATTGATCTGGCCTTGTCT
GTCCGTCCGTCCGTTTGTTTTTTTTTTTTTCTAATTTTGTTCCCATTTTC
TGTCGGTATTCCAAAAAAATCTCTCCTTCGCATTTTTACTTGATGAGTAA
TGGATAGCTGATATTCGGTTAACTCGACTATAGCATTCTCTCTTGTTTTT
AAGCTATTGTAACTCAAGAATTACGAGTTCACGAAGACATTAATACAAAT
ATAAATTTTAGGTGTTTATTAAAAAGTATTAGCCCCGTTCAGAAATAACA
TTCCAATTCCAAGACTGGTCACAACAATAGCACTATTAAGATCAATAATT
TTATATAATATATTTAGAACATAAATTTGTTTTTTATACATAGAAATTAT
ATGAATTAGTTCAAAAACTCGTGTATATCTACGCTAAATGAGCTAAAATT
TATTACAGCTAAAAAACGAGTAAACGTATAACAAAGTTAAAAAAAAAAAA
AAAAAAA

LD09848.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
betaInt-nu-RA 3589 betaInt-nu-RA 217..3354 1..3139 15655 99.9 Plus
betaInt-nu.b 3572 betaInt-nu.b 497..3385 250..3139 14410 99.9 Plus
betaInt-nu.a 3354 betaInt-nu.a 465..3167 436..3139 13480 99.9 Plus
betaInt-nu.a 3354 betaInt-nu.a 217..470 1..254 1270 100 Plus
betaInt-nu.b 3572 betaInt-nu.b 217..467 1..251 1255 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21054578..21056334 1381..3138 8710 99.8 Plus
chr2L 23010047 chr2L 21053470..21054222 437..1189 3765 100 Plus
chr2L 23010047 chr2L 21054279..21054476 1188..1385 990 100 Plus
chr2L 23010047 chr2L 21051930..21052119 250..439 950 100 Plus
chr2L 23010047 chr2L 21051522..21051695 1..174 870 100 Plus
chr2L 23010047 chr2L 21051758..21051836 174..252 395 100 Plus
chr4 1351717 chr4 1135250..1135398 2710..2555 225 80.8 Minus
chr2R 21145070 chr2R 742612..742697 2642..2555 225 86.4 Minus
chr2RHet 3288813 chr2RHet 1545945..1546029 2555..2641 220 86.2 Plus
chr2L 23010047 chr2L 22892394..22892471 2555..2634 215 87.5 Plus
chr4 1351717 chr4 254329..254416 2766..2853 215 83 Plus
chrX 22417052 chrX 20648577..20648654 2634..2555 215 87.5 Minus
chr3L 24539361 chr3L 24174034..24174122 2641..2551 210 84.6 Minus
chr2L 23010047 chr2L 22162261..22162340 2770..2849 205 83.8 Plus
chr4 1351717 chr4 170183..170267 2641..2555 205 85.1 Minus
chr3R 27901430 chr3R 2866022..2866106 2546..2632 205 85.1 Plus
chr3LHet 2555433 chr3LHet 2011738..2011822 2555..2641 205 85.1 Plus
chr2L 23010047 chr2L 116948..117017 2779..2848 200 85.7 Plus
chr2L 23010047 chr2L 21369128..21369205 2634..2555 200 86.2 Minus
chr4 1351717 chr4 469307..469384 2555..2634 200 86.2 Plus
chr4 1351717 chr4 637257..637341 2766..2850 200 82.4 Plus
chr2R 21145070 chr2R 1332900..1332977 2634..2555 200 86.2 Minus
chr2RHet 3288813 chr2RHet 989755..989832 2555..2634 200 86.2 Plus
chrX 22417052 chrX 15823942..15824014 2777..2849 200 84.9 Plus
chr3L 24539361 chr3L 14620459..14620533 2631..2555 200 87 Minus
chr3L 24539361 chr3L 23606678..23606761 2555..2640 200 84.9 Plus
chr3R 27901430 chr3R 6605..6682 2555..2634 200 86.2 Plus
chr3R 27901430 chr3R 8037937..8038021 2767..2851 200 82.4 Plus
chr3LHet 2555433 chr3LHet 599382..599466 2767..2851 200 82.4 Plus
chr3LHet 2555433 chr3LHet 729582..729654 2849..2777 200 84.9 Minus
chr2L 23010047 chr2L 20222043..20222119 2555..2633 195 86.1 Plus
chr2L 23010047 chr2L 22069048..22069119 2848..2777 195 84.7 Minus
chr2R 21145070 chr2R 21059102..21059193 2641..2548 195 83 Minus
chrX 22417052 chrX 3688269..3688346 2767..2844 195 83.3 Plus
chrX 22417052 chrX 3697362..3697439 2767..2844 195 83.3 Plus
chrX 22417052 chrX 10831174..10831242 2781..2849 195 85.5 Plus
chrX 22417052 chrX 19703168..19703224 2850..2794 195 89.5 Minus
chrX 22417052 chrX 21502946..21503017 2778..2849 195 84.7 Plus
chr3L 24539361 chr3L 9431682..9431764 2557..2641 195 84.7 Plus
chr3L 24539361 chr3L 21943787..21943860 2630..2555 195 86.8 Minus
chr3L 24539361 chr3L 23012169..23012249 2767..2847 195 82.7 Plus
chr2L 23010047 chr2L 17972666..17972739 2777..2850 190 83.8 Plus
chr4 1351717 chr4 1025874..1025949 2632..2555 190 85.9 Minus
chr4 1351717 chr4 1251662..1251744 2767..2849 190 81.9 Plus
chr2R 21145070 chr2R 16248356..16248429 2777..2850 190 83.8 Plus
chr2RHet 3288813 chr2RHet 990860..990932 2634..2560 190 86.7 Minus
chrX 22417052 chrX 612813..612880 2777..2844 190 85.3 Plus
chrX 22417052 chrX 22245724..22245808 2641..2555 190 83.9 Minus
chr3L 24539361 chr3L 23760606..23760661 2849..2794 190 89.3 Minus
chr3L 24539361 chr3L 24063471..24063544 2850..2777 190 83.8 Minus
chr3R 27901430 chr3R 81741..81825 2555..2641 190 83.9 Plus
chr3R 27901430 chr3R 239714..239769 2849..2794 190 89.3 Minus
chr3R 27901430 chr3R 27886436..27886488 2848..2796 190 90.6 Minus
chrXHet 204175 chrXHet 3267..3325 2794..2852 190 88.1 Plus
chrXHet 204175 chrXHet 41333..41388 2849..2794 190 89.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21056100..21057857 1381..3139 8730 99.9 Plus
2L 23513712 2L 21054992..21055744 437..1189 3765 100 Plus
2L 23513712 2L 21055801..21055998 1188..1385 990 100 Plus
2L 23513712 2L 21053456..21053645 250..439 950 100 Plus
2L 23513712 2L 21053048..21053221 1..174 870 100 Plus
2L 23513712 2L 21053284..21053362 174..252 395 100 Plus
4 1348131 4 1114774..1114922 2710..2555 225 80.8 Minus
2R 25286936 2R 4855043..4855128 2642..2555 225 86.4 Minus
2R 25286936 2R 2770870..2770954 2555..2641 220 86.2 Plus
2L 23513712 2L 23001155..23001232 2555..2634 215 87.5 Plus
4 1348131 4 233748..233835 2766..2853 215 83 Plus
X 23542271 X 20783234..20783311 2634..2555 215 87.5 Minus
3L 28110227 3L 24185127..24185215 2641..2551 210 84.6 Minus
2L 23513712 2L 22163726..22163805 2770..2849 205 83.8 Plus
4 1348131 4 149549..149633 2641..2555 205 85.1 Minus
4 1348131 4 1005339..1005414 2632..2555 205 87.2 Minus
3L 28110227 3L 26729447..26729531 2555..2641 205 85.1 Plus
3R 32079331 3R 7040022..7040106 2546..2632 205 85.1 Plus
2L 23513712 2L 116911..116980 2779..2848 200 85.7 Plus
2L 23513712 2L 21370612..21370689 2634..2555 200 86.2 Minus
4 1348131 4 448749..448826 2555..2634 200 86.2 Plus
2R 25286936 2R 2246577..2246654 2555..2634 200 86.2 Plus
2R 25286936 2R 5445518..5445595 2634..2555 200 86.2 Minus
X 23542271 X 15934096..15934168 2777..2849 200 84.9 Plus
3L 28110227 3L 14630388..14630462 2631..2555 200 87 Minus
3L 28110227 3L 23617766..23617849 2555..2640 200 84.9 Plus
3L 28110227 3L 25113926..25114010 2767..2851 200 82.4 Plus
3L 28110227 3L 25244104..25244176 2849..2777 200 84.9 Minus
3R 32079331 3R 4180884..4180961 2555..2634 200 86.2 Plus
2L 23513712 2L 22070458..22070529 2848..2777 195 84.7 Minus
2R 25286936 2R 25173193..25173284 2641..2548 195 83 Minus
X 23542271 X 3794873..3794950 2767..2844 195 83.3 Plus
X 23542271 X 3803966..3804043 2767..2844 195 83.3 Plus
X 23542271 X 10939862..10939930 2781..2849 195 85.5 Plus
X 23542271 X 19814503..19814559 2850..2794 195 89.5 Minus
X 23542271 X 21637788..21637859 2778..2849 195 84.7 Plus
3L 28110227 3L 9439783..9439865 2557..2641 195 84.7 Plus
3L 28110227 3L 21954853..21954926 2630..2555 195 86.8 Minus
3L 28110227 3L 23023251..23023331 2767..2847 195 82.7 Plus
2L 23513712 2L 3462719..3462804 2852..2767 190 81.4 Minus
2L 23513712 2L 17974032..17974105 2777..2850 190 83.8 Plus
4 1348131 4 1248087..1248169 2767..2849 190 81.9 Plus
2R 25286936 2R 2247682..2247754 2634..2560 190 86.7 Minus
2R 25286936 2R 20361353..20361426 2777..2850 190 83.8 Plus
X 23542271 X 718845..718912 2777..2844 190 85.3 Plus
X 23542271 X 22849720..22849804 2641..2555 190 83.9 Minus
X 23542271 X 23024449..23024507 2794..2852 190 88.1 Plus
3L 28110227 3L 23771707..23771762 2849..2794 190 89.3 Minus
3L 28110227 3L 24074565..24074638 2850..2777 190 83.8 Minus
3R 32079331 3R 4256020..4256104 2555..2641 190 83.9 Plus
3R 32079331 3R 4413995..4414050 2849..2794 190 89.3 Minus
3R 32079331 3R 12212561..12212634 2778..2851 190 83.8 Plus
3R 32079331 3R 32064336..32064388 2848..2796 190 90.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21056100..21057857 1381..3139 8740 99.8 Plus
2L 23513712 2L 21054992..21055744 437..1189 3765 100 Plus
2L 23513712 2L 21055801..21055998 1188..1385 990 100 Plus
2L 23513712 2L 21053456..21053645 250..439 950 100 Plus
2L 23513712 2L 21053048..21053221 1..174 870 100 Plus
2L 23513712 2L 21053284..21053362 174..252 395 100 Plus
2R 25260384 2R 4856242..4856327 2642..2555 235 86.3 Minus
2R 25260384 2R 2770870..2770954 2555..2641 230 86.2 Plus
2L 23513712 2L 23001155..23001232 2555..2634 225 87.5 Plus
X 23527363 X 20768326..20768403 2634..2555 225 87.5 Minus
3L 28103327 3L 24178227..24178315 2641..2551 220 84.6 Minus
3L 28103327 3L 26722547..26722631 2555..2641 215 85 Plus
3R 31820162 3R 6780853..6780937 2546..2632 215 85 Plus
4 1331231 4 233748..233835 2766..2853 215 82.9 Plus
4 1331231 4 1005339..1005414 2632..2555 215 87.1 Minus
4 1331231 4 149549..149633 2641..2555 215 85 Minus
3R 31820162 3R 3921715..3921792 2555..2634 210 86.2 Plus
2L 23513712 2L 22163726..22163805 2770..2849 205 83.7 Plus
3L 28103327 3L 9432883..9432965 2557..2641 205 84.7 Plus
3L 28103327 3L 21947953..21948026 2630..2555 205 86.8 Minus
2R 25260384 2R 25174392..25174483 2641..2548 205 82.9 Minus
2L 23513712 2L 116911..116980 2779..2848 200 85.7 Plus
X 23527363 X 15942194..15942266 2777..2849 200 84.9 Plus
X 23527363 X 22834812..22834896 2641..2555 200 83.9 Minus
3L 28103327 3L 25107026..25107110 2767..2851 200 82.3 Plus
3L 28103327 3L 25237204..25237276 2849..2777 200 84.9 Minus
3R 31820162 3R 3996851..3996935 2555..2641 200 83.9 Plus
2L 23513712 2L 22070458..22070529 2848..2777 195 84.7 Minus
2L 23513712 2L 22995431..22995508 2634..2555 195 85 Minus
X 23527363 X 10947960..10948028 2781..2849 195 85.5 Plus
X 23527363 X 21622880..21622951 2778..2849 195 84.7 Plus
X 23527363 X 3812064..3812141 2767..2844 195 83.3 Plus
X 23527363 X 3802971..3803048 2767..2844 195 83.3 Plus
X 23527363 X 23014622..23014693 2634..2561 195 86.4 Minus
X 23527363 X 19822601..19822657 2850..2794 195 89.4 Minus
3L 28103327 3L 24210787..24210864 2555..2634 195 85 Plus
3L 28103327 3L 24190047..24190124 2555..2634 195 85 Plus
3L 28103327 3L 23016351..23016431 2767..2847 195 82.7 Plus
3R 31820162 3R 31805491..31805568 2634..2555 195 85 Minus
3R 31820162 3R 31805167..31805219 2848..2796 190 90.5 Minus
4 1331231 4 1231187..1231269 2767..2849 190 81.9 Plus
2L 23513712 2L 22752580..22752655 2555..2632 185 84.6 Plus
X 23527363 X 163524..163608 2555..2641 185 82.7 Plus
X 23527363 X 21118164..21118217 2794..2847 180 88.8 Plus
2L 23513712 2L 22759376..22759458 2767..2849 175 80.7 Plus
2L 23513712 2L 21923420..21923472 2794..2846 175 88.6 Plus
X 23527363 X 23014181..23014236 2849..2794 175 87.5 Minus
X 23527363 X 19818008..19818063 2849..2794 175 87.5 Minus
X 23527363 X 22577256..22577323 2847..2780 175 83.8 Minus
X 23527363 X 22953889..22953973 2851..2767 170 80 Minus
3L 28103327 3L 6308256..6308325 2563..2634 170 84.7 Plus
3L 28103327 3L 23338824..23338869 2641..2596 170 91.3 Minus
2R 25260384 2R 5529252..5529306 2848..2794 170 87.2 Minus
2L 23513712 2L 4030677..4030748 2777..2848 165 81.9 Plus
2L 23513712 2L 21557319..21557399 2847..2767 165 80.2 Minus
X 23527363 X 163975..164031 2794..2850 165 85.9 Plus
3L 28103327 3L 25473025..25473081 2850..2794 165 85.9 Minus
4 1331231 4 1224233..1224271 2596..2634 165 94.8 Plus
X 23527363 X 22834379..22834452 2850..2777 160 81 Minus
3R 31820162 3R 3927476..3927540 2779..2843 160 83 Plus
X 23527363 X 22480041..22480095 2794..2848 155 85.4 Plus
3L 28103327 3L 22958922..22958958 2596..2632 155 94.5 Plus
3L 28103327 3L 23338238..23338322 2850..2766 155 78.8 Minus
2R 25260384 2R 5192189..5192234 2641..2596 155 89.1 Minus
X 23527363 X 21201512..21201550 2634..2596 150 92.3 Minus
X 23527363 X 19881113..19881151 2634..2596 150 92.3 Minus
X 23527363 X 21110639..21110677 2596..2634 150 92.3 Plus
X 23527363 X 22577623..22577661 2634..2596 150 92.3 Minus
X 23527363 X 19818274..19818312 2634..2596 150 92.3 Minus
3L 28103327 3L 6308568..6308618 2794..2844 150 86.2 Plus
3L 28103327 3L 27836338..27836412 2849..2775 150 80 Minus
3L 28103327 3L 27527249..27527323 2849..2775 150 80 Minus
2R 25260384 2R 5787130..5787186 2850..2794 150 84.2 Minus
2L 23513712 2L 21922954..21922997 2598..2641 145 88.6 Plus
2L 23513712 2L 4030553..4030590 2596..2633 145 92.1 Plus
X 23527363 X 19880778..19880806 2849..2821 145 100 Minus
X 23527363 X 21201126..21201181 2850..2795 145 83.9 Minus
X 23527363 X 22471339..22471376 2596..2633 145 92.1 Plus
X 23527363 X 22954387..22954424 2634..2597 145 92.1 Minus
X 23527363 X 22951082..22951164 2849..2767 145 78.3 Minus
3L 28103327 3L 22961225..22961268 2808..2851 145 88.6 Plus
2R 25260384 2R 5529776..5529822 2642..2596 145 87.2 Minus
2L 23513712 2L 22163267..22163312 2596..2641 140 86.9 Plus
2L 23513712 2L 21557805..21557844 2635..2596 140 90 Minus
3L 28103327 3L 25661062..25661098 2675..2711 140 91.8 Plus
3L 28103327 3L 25660988..25661033 2596..2641 140 86.9 Plus
3L 28103327 3L 25473478..25473523 2641..2596 140 86.9 Minus
3L 28103327 3L 27838382..27838421 2635..2596 140 90 Minus
3L 28103327 3L 27529293..27529332 2635..2596 140 90 Minus
2R 25260384 2R 5191370..5191397 2848..2821 140 100 Minus
2R 25260384 2R 5787674..5787710 2634..2598 140 91.8 Minus
Blast to na_te.dros performed 2019-03-15 23:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
INE-1 611 INE-1 INE1 611bp Derived from U66884 (e1371475) (Rel. 52, Last updated, Version 6). 472..601 2718..2847 344 75.8 Plus
Dpse\mini-me 4622 Dpse\mini-me DPSEMINIME 4622bp 2..171 2555..2718 287 66.1 Plus
Dsub\SGM 823 Dsub\SGM SGM 823bp Derived from AF043638. 1..179 2550..2728 248 63.8 Plus
Dfun\Isfun-1 928 Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). 18..162 2582..2718 168 64 Plus
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 1294..1420 2722..2599 163 62.9 Minus
Dbuz\ISBu2 726 Dbuz\ISBu2 ISBU2 726bp 48..171 2599..2718 162 65.1 Plus
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 3047..3122 2724..2653 155 69.7 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 65..236 2751..2591 128 59.3 Minus

LD09848.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:38:54 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21051522..21051695 1..174 100 -> Plus
chr2L 21051759..21051835 175..251 100 -> Plus
chr2L 21051932..21052118 252..438 100 -> Plus
chr2L 21053472..21054222 439..1189 100 -> Plus
chr2L 21054281..21054476 1190..1385 100 -> Plus
chr2L 21054583..21055751 1386..2554 100 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:00 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
betaInt-nu-RA 1..2400 87..2486 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:03:58 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
betaInt-nu-RA 1..2400 87..2486 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:51:34 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
Itgbetanu-RA 1..2400 87..2486 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:49:24 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
betaInt-nu-RA 1..2400 87..2486 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:44 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
Itgbetanu-RA 1..2400 87..2486 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:55:01 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
betaInt-nu-RA 217..3353 1..3138 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:03:58 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
betaInt-nu-RA 217..3353 1..3138 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:51:34 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
Itgbetanu-RA 16..3152 1..3138 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:49:25 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
betaInt-nu-RA 217..3353 1..3138 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:44 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
Itgbetanu-RA 16..3152 1..3138 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:38:54 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21053048..21053221 1..174 100 -> Plus
2L 21053285..21053361 175..251 100 -> Plus
2L 21053458..21053644 252..438 100 -> Plus
2L 21054994..21055744 439..1189 100 -> Plus
2L 21055803..21055998 1190..1385 100 -> Plus
2L 21056105..21057856 1386..3138 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:38:54 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21053048..21053221 1..174 100 -> Plus
2L 21053285..21053361 175..251 100 -> Plus
2L 21053458..21053644 252..438 100 -> Plus
2L 21054994..21055744 439..1189 100 -> Plus
2L 21055803..21055998 1190..1385 100 -> Plus
2L 21056105..21057856 1386..3138 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:38:54 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21053048..21053221 1..174 100 -> Plus
2L 21053285..21053361 175..251 100 -> Plus
2L 21053458..21053644 252..438 100 -> Plus
2L 21054994..21055744 439..1189 100 -> Plus
2L 21055803..21055998 1190..1385 100 -> Plus
2L 21056105..21057856 1386..3138 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:51:34 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21055803..21055998 1190..1385 100 -> Plus
arm_2L 21053048..21053221 1..174 100 -> Plus
arm_2L 21053285..21053361 175..251 100 -> Plus
arm_2L 21053458..21053644 252..438 100 -> Plus
arm_2L 21054994..21055744 439..1189 100 -> Plus
arm_2L 21056105..21057856 1386..3138 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:56:02 Download gff for LD09848.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21054994..21055744 439..1189 100 -> Plus
2L 21055803..21055998 1190..1385 100 -> Plus
2L 21056105..21057856 1386..3138 99   Plus
2L 21053048..21053221 1..174 100 -> Plus
2L 21053285..21053361 175..251 100 -> Plus
2L 21053458..21053644 252..438 100 -> Plus

LD09848.pep Sequence

Translation from 86 to 2485

> LD09848.pep
MTSLGGRAFLWIYLVFLIAEISHSDADSIDDQCRHADSCERCLSAHLECA
WCTDKEYQVGYRCLSRRQLLNYNCSETDIYENQPVLDVLQDKPLKDYETS
DQAVQVTPQRAYLKLVKGNTQRMKLSYRTARNNPLDLYVLMDLTWTMRDD
KKTLEELGAQLSQTLKNLTGNYRLGFGSFADKPTLPMILPQHRENPCAAE
RATCEPTYGYRHQLSLTDDIPAFTSAVANSKITGNLDNLEGGLDALMQVI
VCTKEIGWKEQARKVVILVTDGFMHLAGDGLLAGIIQRNDKQCHLNKAGE
YTGSLNYDYPSLEEIYRELLRRKINVIFAVTEEVVSSYWELSALMKEISY
VDILSADSSNILELIKKSYESLIKRTQFADNSPDFIDMAYYTDCGGQFPS
LQKRNYCNNVTLGKQIDFYVDVTLKKYPDNQVYTHKIRVEETSLSEFMDL
DVELQRPCPCQETPDPENEEGRFLCDYKGYLYCGMCECDEGWTGTYCNCP
TDATNVTSNEALLQKCRQPFSDKSTSELVCSNHGDCDCGTCLCDPGYTGP
FCECRECLDCDEKLADCFCGQCVCKYGWSGSKCNCDGDTDACVGPTGEIC
SERGTCQCEECQCEEPYLGKFCEIDPEKDNKLCLFYEPCVTCLIEQKQGM
GVCENLTEICSSLDRQETYPYNFVHELDPEQDQCLVRLVNKHGIQCDSFF
VYQVIDHSNFLTIQAVDCEPPDYVALVGYISAFTLLIGLLIIFIILWYIR
AKDAREYAKFEEDQKNSVRQENPIYRDPVGRYEVPKALSVKYDENPFAS*

LD09848.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21041-PA 929 GF21041-PA 174..929 46..799 3270 80.6 Plus
Dana\GF21297-PA 864 GF21297-PA 170..859 102..785 1013 33.6 Plus
Dana\GF19389-PA 3019 GF19389-PA 590..717 474..622 204 35.3 Plus
Dana\GF23464-PA 3407 GF23464-PA 1291..1451 475..624 161 31.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21271-PA 799 GG21271-PA 1..799 1..799 3774 90.1 Plus
Dere\GG19682-PA 843 GG19682-PA 143..838 96..785 973 33 Plus
Dere\GG17713-PA 3011 GG17713-PA 594..721 474..622 206 35.3 Plus
Dere\GG13183-PA 2729 GG13183-PA 613..773 475..624 163 31.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10404-PA 778 GH10404-PA 2..778 25..799 3045 72.7 Plus
Dgri\GH24161-PA 895 GH24161-PA 200..890 102..785 1011 33.7 Plus
Dgri\GH17559-PA 3033 GH17559-PA 618..745 474..622 202 34.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
Itgbn-PB 799 CG1762-PB 1..799 1..799 4364 100 Plus
Itgbn-PA 799 CG1762-PA 1..799 1..799 4364 100 Plus
mys-PB 846 CG1560-PB 40..841 33..785 1043 31.4 Plus
mys-PD 846 CG1560-PD 40..841 33..785 1030 30.9 Plus
mys-PC 846 CG1560-PC 40..841 33..785 1030 30.9 Plus
mys-PA 846 CG1560-PA 40..841 33..785 1030 30.9 Plus
Ten-a-PG 2902 CG42338-PG 492..619 474..622 231 34.6 Plus
Ten-a-PN 3004 CG42338-PN 594..721 474..622 231 34.6 Plus
Ten-a-PK 3004 CG42338-PK 594..721 474..622 231 34.6 Plus
Ten-a-PI 3004 CG42338-PI 594..721 474..622 231 34.6 Plus
Ten-a-PF 3004 CG42338-PF 594..721 474..622 231 34.6 Plus
Ten-a-PD 3004 CG32659-PA 594..721 474..622 231 34.6 Plus
Ten-a-PM 3013 CG42338-PM 594..721 474..622 231 34.6 Plus
Ten-a-PL 3013 CG42338-PL 594..721 474..622 231 34.6 Plus
Ten-a-PE 3378 CG42338-PE 968..1095 474..622 231 34.6 Plus
Ten-a-PP 3378 CG42338-PP 968..1095 474..622 231 34.6 Plus
Ten-a-PO 3387 CG42338-PO 968..1095 474..622 231 34.6 Plus
Ten-m-PB 2731 CG5723-PB 605..803 460..662 201 28.9 Plus
Ten-m-PD 3297 CG5723-PD 1162..1360 460..662 201 28.9 Plus
Ten-m-PE 3349 CG5723-PE 1162..1360 460..662 201 28.9 Plus
Ten-a-PG 2902 CG42338-PG 558..727 474..630 190 28.1 Plus
Ten-a-PN 3004 CG42338-PN 660..829 474..630 190 28.1 Plus
Ten-a-PK 3004 CG42338-PK 660..829 474..630 190 28.1 Plus
Ten-a-PI 3004 CG42338-PI 660..829 474..630 190 28.1 Plus
Ten-a-PF 3004 CG42338-PF 660..829 474..630 190 28.1 Plus
Ten-a-PD 3004 CG32659-PA 660..829 474..630 190 28.1 Plus
Ten-a-PM 3013 CG42338-PM 660..829 474..630 190 28.1 Plus
Ten-a-PL 3013 CG42338-PL 660..829 474..630 190 28.1 Plus
Ten-a-PE 3378 CG42338-PE 1034..1203 474..630 190 28.1 Plus
Ten-a-PP 3378 CG42338-PP 1034..1203 474..630 190 28.1 Plus
Ten-a-PO 3387 CG42338-PO 1034..1203 474..630 190 28.1 Plus
Ten-m-PB 2731 CG5723-PB 548..706 474..622 182 28.2 Plus
Ten-m-PD 3297 CG5723-PD 1105..1263 474..622 182 28.2 Plus
Ten-m-PE 3349 CG5723-PE 1105..1263 474..622 182 28.2 Plus
Ten-a-PG 2902 CG42338-PG 462..581 475..622 179 29.4 Plus
Ten-a-PN 3004 CG42338-PN 564..683 475..622 179 29.4 Plus
Ten-a-PK 3004 CG42338-PK 564..683 475..622 179 29.4 Plus
Ten-a-PI 3004 CG42338-PI 564..683 475..622 179 29.4 Plus
Ten-a-PF 3004 CG42338-PF 564..683 475..622 179 29.4 Plus
Ten-a-PD 3004 CG32659-PA 564..683 475..622 179 29.4 Plus
Ten-a-PM 3013 CG42338-PM 564..683 475..622 179 29.4 Plus
Ten-a-PL 3013 CG42338-PL 564..683 475..622 179 29.4 Plus
Ten-a-PE 3378 CG42338-PE 938..1057 475..622 179 29.4 Plus
Ten-a-PP 3378 CG42338-PP 938..1057 475..622 179 29.4 Plus
Ten-a-PO 3387 CG42338-PO 938..1057 475..622 179 29.4 Plus
LRP1-PG 4730 CG33087-PG 4303..4508 486..665 174 28.2 Plus
LRP1-PF 4752 CG33087-PF 4329..4534 486..665 174 28.2 Plus
drpr-PF 976 CG2086-PF 156..300 482..622 169 31.4 Plus
drpr-PB 1031 CG2086-PB 156..300 482..622 169 31.4 Plus
drpr-PE 1042 CG2086-PE 156..300 482..622 169 31.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23240-PA 809 GI23240-PA 30..808 24..798 2999 72.9 Plus
Dmoj\GI15296-PA 859 GI15296-PA 161..854 99..785 1024 34.3 Plus
Dmoj\GI21638-PA 3002 GI21638-PA 604..732 474..623 202 34.4 Plus
Dmoj\GI13922-PA 2740 GI13922-PA 624..784 475..624 160 30.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25882-PA 767 GL25882-PA 2..767 35..799 3219 78.9 Plus
Dper\GL26731-PA 617 GL26731-PA 153..588 99..543 818 37.5 Plus
Dper\GL25136-PA 2840 GL25136-PA 637..764 474..622 203 34.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14581-PA 774 GA14581-PA 2..774 28..799 3209 79.1 Plus
Dpse\GA23031-PA 856 GA23031-PA 159..851 99..785 1012 33.8 Plus
Dpse\GA17047-PA 2902 GA17047-PA 499..626 474..622 203 34.6 Plus
Dpse\GA25171-PB 3322 GA25171-PB 1206..1366 475..624 158 30.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23386-PA 800 GM23386-PA 1..800 1..799 4111 95.8 Plus
Dsec\GM11222-PA 838 GM11222-PA 8..833 7..785 965 30 Plus
Dsec\GM22094-PA 3372 GM22094-PA 1256..1416 475..624 163 31.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16875-PA 838 GD16875-PA 8..833 7..785 955 29.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23751-PA 791 GJ23751-PA 23..791 28..799 3030 72.9 Plus
Dvir\GJ17000-PA 865 GJ17000-PA 188..860 120..785 980 33.9 Plus
Dvir\GJ16871-PA 2957 GJ16871-PA 558..685 474..622 202 34.6 Plus
Dvir\GJ13712-PA 2738 GJ13712-PA 622..782 475..624 161 30.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24312-PA 767 GK24312-PA 2..767 35..799 3175 76.6 Plus
Dwil\GK25655-PA 842 GK25655-PA 148..837 102..785 989 33.6 Plus
Dwil\GK16488-PA 3076 GK16488-PA 658..839 474..661 200 29 Plus
Dwil\GK17453-PA 3245 GK17453-PA 1129..1289 475..624 162 30.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12889-PA 799 GE12889-PA 1..799 1..799 3986 93.7 Plus
Dyak\GE15757-PA 843 GE15757-PA 146..838 99..785 969 33 Plus
Dyak\GE16501-PA 3017 GE16501-PA 599..726 474..622 206 35.3 Plus
Dyak\GE19509-PA 3751 GE19509-PA 1635..1795 475..624 163 31.5 Plus

LD09848.hyp Sequence

Translation from 86 to 2485

> LD09848.hyp
MTSLGGRAFLWIYLVFLIAEISHSDADSIDDQCRHADSCERCLSAHLECA
WCTDKEYQVGYRCLSRRQLLNYNCSETDIYENQPVLDVLQDKPLKDYETS
DQAVQVTPQRAYLKLVKGNTQRMKLSYRTARNNPLDLYVLMDLTWTMRDD
KKTLEELGAQLSQTLKNLTGNYRLGFGSFADKPTLPMILPQHRENPCAAE
RATCEPTYGYRHQLSLTDDIPAFTSAVANSKITGNLDNLEGGLDALMQVI
VCTKEIGWKEQARKVVILVTDGFMHLAGDGLLAGIIQRNDKQCHLNKAGE
YTGSLNYDYPSLEEIYRELLRRKINVIFAVTEEVVSSYWELSALMKEISY
VDILSADSSNILELIKKSYESLIKRTQFADNSPDFIDMAYYTDCGGQFPS
LQKRNYCNNVTLGKQIDFYVDVTLKKYPDNQVYTHKIRVEETSLSEFMDL
DVELQRPCPCQETPDPENEEGRFLCDYKGYLYCGMCECDEGWTGTYCNCP
TDATNVTSNEALLQKCRQPFSDKSTSELVCSNHGDCDCGTCLCDPGYTGP
FCECRECLDCDEKLADCFCGQCVCKYGWSGSKCNCDGDTDACVGPTGEIC
SERGTCQCEECQCEEPYLGKFCEIDPEKDNKLCLFYEPCVTCLIEQKQGM
GVCENLTEICSSLDRQETYPYNFVHELDPEQDQCLVRLVNKHGIQCDSFF
VYQVIDHSNFLTIQAVDCEPPDYVALVGYISAFTLLIGLLIIFIILWYIR
AKDAREYAKFEEDQKNSVRQENPIYRDPVGRYEVPKALSVKYDENPFAS*

LD09848.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
Itgbetanu-PB 799 CG1762-PB 1..799 1..799 4364 100 Plus
Itgbetanu-PA 799 CG1762-PA 1..799 1..799 4364 100 Plus
mys-PB 846 CG1560-PB 40..841 33..785 1043 31.4 Plus
mys-PD 846 CG1560-PD 40..841 33..785 1030 30.9 Plus
mys-PC 846 CG1560-PC 40..841 33..785 1030 30.9 Plus