Clone LD09850 Report

Search the DGRC for LD09850

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:98
Well:50
Vector:pBS SK-
Associated Gene/TranscriptCdc23-RA
Protein status:LD09850.pep: gold
Preliminary Size:2223
Sequenced Size:2245

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2508 2001-01-01 Release 2 assignment
CG2508 2003-01-01 Sim4 clustering to Release 3
CG2508 2003-02-27 Blastp of sequenced clone
cdc23 2008-04-29 Release 5.5 accounting
cdc23 2008-08-15 Release 5.9 accounting
cdc23 2008-12-18 5.12 accounting

Clone Sequence Records

LD09850.complete Sequence

2245 bp (2245 high quality bases) assembled on 2003-02-27

GenBank Submission: BT010078

> LD09850.complete
TTTTCATAGCCTTTCCAAACAAATCCGGAACAATGGCGATGCAGAAGTTC
TTCAGCGTGCTGCTGCCGGATGTGAAGCGGGAGCTGCGCCGCGGGATCAT
CGAGTGCTCCAAGCGGGGCCTCCTGCACAGCACCAAGTGGCTGGCGGAAA
TGCATCACGGACTGGCCGATGTGCACATAGACAATGAGGCGCCTGATGAG
GATCGCACATTCAGCGAGTGTCAGCTGGAGGGGATTGCGCCGGAGGAGTA
CAGCGACTACTTCCTGGCCAAGAGCTACTACGACGTGAGGGAGTACGACA
GGGCGGCGCATGCGGTCAGGAACTGCGAGTCCAGTGTTCCGCGCTTCCTG
CACTTCTATTCCAGCTACATGGCCAGGGAAAAGCGGCGACTGGACTCGAC
CACGGACCAGGCGAATCTGCACGAACCGAATCAGATGCGCGATCTCGCCG
ACCTGCTGGCTACGTTGCGCATGGAATACGGCAAAAGTCGGCTCGATGGC
TACGGAATATACTTATACGGAGTAGTCCTGAAAGCACTGAATCTCAACCA
GGCCGCCGAGCAAATGCTGGTCCAGGCCATCAGACTGGTACCCATGCTGT
GGAGCGCCTATCTGGAGCTCTCGCCCCTCATCATGGAGAAGAAGAAACTG
CTGAGCCTGCAGCTGGGTGGTCACTGGATGCGGCACTTCTTCATGGCGCA
CACTTACCTGGAGCTGTACCTCAACGACGACGGCCTGAAGATCTACGAGG
ACCTGCAGGCATCGGGTTTCAGCAAGAGCATCTACTTGATTGCCCAGATG
GCTCTGGTCTATCACAATAAGCGGGATGTGGACAAGGCGATTGAGCTGTA
CCAGGCGCTTCTCGAGAGCGATCCCTACCGCCTGGACAATGTGGACACCT
ATTCCAATCTGCTGTTCGTCAAGGAGATGAAAACCGAAATGGCACAGTTG
GCCCACAAGGCTGTCAGCATCAACAAGTACCGCCCGGAGACGTGTTGTGT
AATAGGCAACTACTACAGTATCCGCTGTGATCACCAGGTGGCCATTTCCT
ACTTTCAACGCGCCCTGAAACTGAATCCCAAGTATCTGGCGGCCTGGACC
TTGATGGGACACGAGTTCATGGAGCTGAAAAACACAAATGCAGCCATACA
GAGCTACCGAAAGGCAGTGGAGGTCAACAAGCGGGACTATCGCGCCTGGT
ATGGACTGGGCCAGGCCTACGAGATCATTAAAATGCACTACTACAGCCTG
TACTACTTTAAAATCGCCCACCAACTGCGTCCCTACGACTCTCGAATGCT
GGTTGCCTTGGGCGAGACCTATGAGAAGCTGGACAAGTGCGAAAATGCTG
TGAAGTGCTACTGGAAGGCCATCGATGTGGGTGACATAGAGGGCATAGCG
ATGTACAAACTGGCCAATCTGCACGAGAAGCTCGGCGACCACGAGACGGC
GGTCCATTGCTACATCATGTACTGCGAGGATGAGCGGGCGGCCACCGATA
AGCAGAGCCTCTACCAAGGGTTCATCACGCTGGCCAATTATTACGAGAAG
AAGGGCGAGTACGAACGAGCCGCCTATTACGCTTACAAATGCCTAGACTC
AGAGGATCGCAAAATGGAGGCAAAGGCGCTGCTGAAGACGATTGACTGGA
AGCGCAATGCTGAGGGACAGAAGAAGGTAAAAACTTCGACGGCCGTGGCG
AATGCAGATACCAGTTCCGAGGACGAGATGGAGTGGGAGCTCCAGGATGT
GCGAGTTCGAGTTCCCATCACATCCATAGCCACCACGACTACCTCCACGA
CCACCGTAGCTGCGGAGAGCGCCTCGAGTAGCTCCCTGATCAGCTTGCGT
CCGGACCGAAACCTGATTCAGGGCATGCGTCGATCCCAGTCGAGCAGGAC
TAGCTTAACCGCGCCTGCCAGCGGCACCACCACCACGCCATCGGCAACTG
CTGTCACAATGTCCACCGAGGAAACGCCTGGCACATCCGGTGGCCCTTCG
AATCCGCCCGAGCAGGCGCCCTCGGATGATAACAGCTCCATGGAAATATC
CAGCGTATCCATCGATTAGTCAAATGCGTTCCAATTGTATAAATTTCTAT
TTGTTTTTATGAATTATATTGGCAATCCAAGTAAATAATGAACTAGTCCT
ATTCACCATTGCCAGGTCCAAAACGTCATCCTTCTCCATCATAGTTAATG
AAAATATAGTATTTCACAAAACTACTAAAAAAAAAAAAAAAAAAA

LD09850.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
cdc23-RA 2326 cdc23-RA 101..2326 1..2226 11130 100 Plus
CG31687.a 2907 CG31687.a 123..1209 1..1084 5350 99.6 Plus
CG31687.b 3764 CG31687.b 123..1209 1..1084 5350 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20457821..20458826 1..1006 5030 100 Plus
chr2L 23010047 chr2L 20448704..20449712 1..1006 4950 99.6 Plus
chr2L 23010047 chr2L 20459546..20460164 1608..2226 3095 100 Plus
chr2L 23010047 chr2L 20458882..20459485 1004..1607 3020 100 Plus
chr2L 23010047 chr2L 20449768..20449848 1004..1084 405 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20459386..20460391 1..1006 5030 100 Plus
2L 23513712 2L 20450269..20451277 1..1006 4950 99.6 Plus
2L 23513712 2L 20461111..20461732 1608..2229 3110 100 Plus
2L 23513712 2L 20460447..20461050 1004..1607 3020 100 Plus
2L 23513712 2L 20451333..20451413 1004..1084 405 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20459386..20460391 1..1006 5030 100 Plus
2L 23513712 2L 20450269..20451277 1..1006 4960 99.6 Plus
2L 23513712 2L 20461111..20461732 1608..2229 3110 100 Plus
2L 23513712 2L 20460447..20461050 1004..1607 3020 100 Plus
2L 23513712 2L 20451333..20451413 1004..1084 405 100 Plus
Blast to na_te.dros performed 2019-03-16 16:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
transib2 2844 transib2 TRANSIB2 2844bp 1337..1404 1072..1139 115 63.2 Plus

LD09850.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:33:51 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20457821..20458825 1..1005 100 -> Plus
chr2L 20458884..20459485 1006..1607 100 -> Plus
chr2L 20459546..20460164 1608..2226 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:02 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
cdc23-RA 1..2037 33..2069 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:47:30 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
cdc23-RA 1..2037 33..2069 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:16:41 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc23-RA 1..2037 33..2069 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:38:53 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
cdc23-RA 1..2037 33..2069 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:32:36 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc23-RA 1..2037 33..2069 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:59:25 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
cdc23-RA 1..2217 10..2226 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:47:30 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
cdc23-RA 1..2217 10..2226 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:16:41 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc23-RA 45..2270 1..2226 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:38:53 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
cdc23-RA 1..2217 10..2226 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:32:36 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc23-RA 45..2270 1..2226 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:33:51 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20459386..20460390 1..1005 100 -> Plus
2L 20460449..20461050 1006..1607 100 -> Plus
2L 20461111..20461729 1608..2226 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:33:51 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20459386..20460390 1..1005 100 -> Plus
2L 20460449..20461050 1006..1607 100 -> Plus
2L 20461111..20461729 1608..2226 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:33:51 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20459386..20460390 1..1005 100 -> Plus
2L 20460449..20461050 1006..1607 100 -> Plus
2L 20461111..20461729 1608..2226 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:16:41 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20459386..20460390 1..1005 100 -> Plus
arm_2L 20460449..20461050 1006..1607 100 -> Plus
arm_2L 20461111..20461729 1608..2226 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:09:12 Download gff for LD09850.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20459386..20460390 1..1005 100 -> Plus
2L 20460449..20461050 1006..1607 100 -> Plus
2L 20461111..20461729 1608..2226 100   Plus

LD09850.hyp Sequence

Translation from 2 to 2068

> LD09850.hyp
FIAFPNKSGTMAMQKFFSVLLPDVKRELRRGIIECSKRGLLHSTKWLAEM
HHGLADVHIDNEAPDEDRTFSECQLEGIAPEEYSDYFLAKSYYDVREYDR
AAHAVRNCESSVPRFLHFYSSYMAREKRRLDSTTDQANLHEPNQMRDLAD
LLATLRMEYGKSRLDGYGIYLYGVVLKALNLNQAAEQMLVQAIRLVPMLW
SAYLELSPLIMEKKKLLSLQLGGHWMRHFFMAHTYLELYLNDDGLKIYED
LQASGFSKSIYLIAQMALVYHNKRDVDKAIELYQALLESDPYRLDNVDTY
SNLLFVKEMKTEMAQLAHKAVSINKYRPETCCVIGNYYSIRCDHQVAISY
FQRALKLNPKYLAAWTLMGHEFMELKNTNAAIQSYRKAVEVNKRDYRAWY
GLGQAYEIIKMHYYSLYYFKIAHQLRPYDSRMLVALGETYEKLDKCENAV
KCYWKAIDVGDIEGIAMYKLANLHEKLGDHETAVHCYIMYCEDERAATDK
QSLYQGFITLANYYEKKGEYERAAYYAYKCLDSEDRKMEAKALLKTIDWK
RNAEGQKKVKTSTAVANADTSSEDEMEWELQDVRVRVPITSIATTTTSTT
TVAAESASSSSLISLRPDRNLIQGMRRSQSSRTSLTAPASGTTTTPSATA
VTMSTEETPGTSGGPSNPPEQAPSDDNSSMEISSVSID*

LD09850.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc23-PB 678 CG2508-PB 1..678 11..688 3528 100 Plus
Cdc23-PA 678 CG2508-PA 1..678 11..688 3528 100 Plus
CG31687-PB 351 CG31687-PB 1..351 11..360 1809 99.4 Plus
CG31687-PC 351 CG31687-PC 1..351 11..360 1809 99.4 Plus
Cdc27-PB 900 CG8610-PB 576..801 259..484 282 25.9 Plus

LD09850.pep Sequence

Translation from 32 to 2068

> LD09850.pep
MAMQKFFSVLLPDVKRELRRGIIECSKRGLLHSTKWLAEMHHGLADVHID
NEAPDEDRTFSECQLEGIAPEEYSDYFLAKSYYDVREYDRAAHAVRNCES
SVPRFLHFYSSYMAREKRRLDSTTDQANLHEPNQMRDLADLLATLRMEYG
KSRLDGYGIYLYGVVLKALNLNQAAEQMLVQAIRLVPMLWSAYLELSPLI
MEKKKLLSLQLGGHWMRHFFMAHTYLELYLNDDGLKIYEDLQASGFSKSI
YLIAQMALVYHNKRDVDKAIELYQALLESDPYRLDNVDTYSNLLFVKEMK
TEMAQLAHKAVSINKYRPETCCVIGNYYSIRCDHQVAISYFQRALKLNPK
YLAAWTLMGHEFMELKNTNAAIQSYRKAVEVNKRDYRAWYGLGQAYEIIK
MHYYSLYYFKIAHQLRPYDSRMLVALGETYEKLDKCENAVKCYWKAIDVG
DIEGIAMYKLANLHEKLGDHETAVHCYIMYCEDERAATDKQSLYQGFITL
ANYYEKKGEYERAAYYAYKCLDSEDRKMEAKALLKTIDWKRNAEGQKKVK
TSTAVANADTSSEDEMEWELQDVRVRVPITSIATTTTSTTTVAAESASSS
SLISLRPDRNLIQGMRRSQSSRTSLTAPASGTTTTPSATAVTMSTEETPG
TSGGPSNPPEQAPSDDNSSMEISSVSID*

LD09850.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15120-PA 675 GF15120-PA 1..675 3..678 3019 87.2 Plus
Dana\GF23866-PA 908 GF23866-PA 584..762 249..427 278 30.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21234-PA 677 GG21234-PA 1..677 1..678 3407 95 Plus
Dere\GG14987-PA 903 GG14987-PA 579..838 249..474 277 25.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10134-PA 707 GH10134-PA 1..707 3..678 2932 79.5 Plus
Dgri\GH16207-PA 915 GH16207-PA 544..816 199..474 272 24.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc23-PB 678 CG2508-PB 1..678 1..678 3528 100 Plus
Cdc23-PA 678 CG2508-PA 1..678 1..678 3528 100 Plus
CG31687-PB 351 CG31687-PB 1..351 1..350 1809 99.4 Plus
CG31687-PC 351 CG31687-PC 1..351 1..350 1809 99.4 Plus
Cdc27-PB 900 CG8610-PB 576..801 249..474 282 25.9 Plus
Cdc27-PA 900 CG8610-PA 576..801 249..474 282 25.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22203-PA 701 GI22203-PA 1..701 3..678 2928 79.7 Plus
Dmoj\GI13353-PA 925 GI13353-PA 601..826 249..474 261 26.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26609-PA 681 GL26609-PA 1..681 3..678 2999 86.1 Plus
Dper\GL24900-PA 932 GL24900-PA 575..833 216..474 298 26 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28992-PA 681 GA28992-PA 1..681 3..678 3007 86.4 Plus
Dpse\GA21205-PA 932 GA21205-PA 575..833 216..474 298 26 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23349-PA 678 GM23349-PA 1..678 1..678 3629 98.7 Plus
Dsec\GM13783-PA 311 GM13783-PA 2..165 264..427 272 31.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24259-PA 678 GD24259-PA 1..678 1..678 3620 98.4 Plus
Dsim\GD13080-PA 900 GD13080-PA 576..835 249..474 267 25 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20073-PA 691 GJ20073-PA 1..691 3..678 2999 82.8 Plus
Dvir\GJ13183-PA 926 GJ13183-PA 617..827 264..474 269 27.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18267-PA 712 GK18267-PA 1..587 3..582 2770 86.9 Plus
Dwil\GK13137-PA 885 GK13137-PA 562..781 252..474 292 28.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13310-PA 676 GE13310-PA 1..676 1..678 3276 94.1 Plus
Dyak\GE20433-PA 905 GE20433-PA 581..759 249..427 274 29.7 Plus