BDGP Sequence Production Resources |
Search the DGRC for LD09850
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 98 |
Well: | 50 |
Vector: | pBS SK- |
Associated Gene/Transcript | Cdc23-RA |
Protein status: | LD09850.pep: gold |
Preliminary Size: | 2223 |
Sequenced Size: | 2245 |
Gene | Date | Evidence |
---|---|---|
CG2508 | 2001-01-01 | Release 2 assignment |
CG2508 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2508 | 2003-02-27 | Blastp of sequenced clone |
cdc23 | 2008-04-29 | Release 5.5 accounting |
cdc23 | 2008-08-15 | Release 5.9 accounting |
cdc23 | 2008-12-18 | 5.12 accounting |
2245 bp (2245 high quality bases) assembled on 2003-02-27
GenBank Submission: BT010078
> LD09850.complete TTTTCATAGCCTTTCCAAACAAATCCGGAACAATGGCGATGCAGAAGTTC TTCAGCGTGCTGCTGCCGGATGTGAAGCGGGAGCTGCGCCGCGGGATCAT CGAGTGCTCCAAGCGGGGCCTCCTGCACAGCACCAAGTGGCTGGCGGAAA TGCATCACGGACTGGCCGATGTGCACATAGACAATGAGGCGCCTGATGAG GATCGCACATTCAGCGAGTGTCAGCTGGAGGGGATTGCGCCGGAGGAGTA CAGCGACTACTTCCTGGCCAAGAGCTACTACGACGTGAGGGAGTACGACA GGGCGGCGCATGCGGTCAGGAACTGCGAGTCCAGTGTTCCGCGCTTCCTG CACTTCTATTCCAGCTACATGGCCAGGGAAAAGCGGCGACTGGACTCGAC CACGGACCAGGCGAATCTGCACGAACCGAATCAGATGCGCGATCTCGCCG ACCTGCTGGCTACGTTGCGCATGGAATACGGCAAAAGTCGGCTCGATGGC TACGGAATATACTTATACGGAGTAGTCCTGAAAGCACTGAATCTCAACCA GGCCGCCGAGCAAATGCTGGTCCAGGCCATCAGACTGGTACCCATGCTGT GGAGCGCCTATCTGGAGCTCTCGCCCCTCATCATGGAGAAGAAGAAACTG CTGAGCCTGCAGCTGGGTGGTCACTGGATGCGGCACTTCTTCATGGCGCA CACTTACCTGGAGCTGTACCTCAACGACGACGGCCTGAAGATCTACGAGG ACCTGCAGGCATCGGGTTTCAGCAAGAGCATCTACTTGATTGCCCAGATG GCTCTGGTCTATCACAATAAGCGGGATGTGGACAAGGCGATTGAGCTGTA CCAGGCGCTTCTCGAGAGCGATCCCTACCGCCTGGACAATGTGGACACCT ATTCCAATCTGCTGTTCGTCAAGGAGATGAAAACCGAAATGGCACAGTTG GCCCACAAGGCTGTCAGCATCAACAAGTACCGCCCGGAGACGTGTTGTGT AATAGGCAACTACTACAGTATCCGCTGTGATCACCAGGTGGCCATTTCCT ACTTTCAACGCGCCCTGAAACTGAATCCCAAGTATCTGGCGGCCTGGACC TTGATGGGACACGAGTTCATGGAGCTGAAAAACACAAATGCAGCCATACA GAGCTACCGAAAGGCAGTGGAGGTCAACAAGCGGGACTATCGCGCCTGGT ATGGACTGGGCCAGGCCTACGAGATCATTAAAATGCACTACTACAGCCTG TACTACTTTAAAATCGCCCACCAACTGCGTCCCTACGACTCTCGAATGCT GGTTGCCTTGGGCGAGACCTATGAGAAGCTGGACAAGTGCGAAAATGCTG TGAAGTGCTACTGGAAGGCCATCGATGTGGGTGACATAGAGGGCATAGCG ATGTACAAACTGGCCAATCTGCACGAGAAGCTCGGCGACCACGAGACGGC GGTCCATTGCTACATCATGTACTGCGAGGATGAGCGGGCGGCCACCGATA AGCAGAGCCTCTACCAAGGGTTCATCACGCTGGCCAATTATTACGAGAAG AAGGGCGAGTACGAACGAGCCGCCTATTACGCTTACAAATGCCTAGACTC AGAGGATCGCAAAATGGAGGCAAAGGCGCTGCTGAAGACGATTGACTGGA AGCGCAATGCTGAGGGACAGAAGAAGGTAAAAACTTCGACGGCCGTGGCG AATGCAGATACCAGTTCCGAGGACGAGATGGAGTGGGAGCTCCAGGATGT GCGAGTTCGAGTTCCCATCACATCCATAGCCACCACGACTACCTCCACGA CCACCGTAGCTGCGGAGAGCGCCTCGAGTAGCTCCCTGATCAGCTTGCGT CCGGACCGAAACCTGATTCAGGGCATGCGTCGATCCCAGTCGAGCAGGAC TAGCTTAACCGCGCCTGCCAGCGGCACCACCACCACGCCATCGGCAACTG CTGTCACAATGTCCACCGAGGAAACGCCTGGCACATCCGGTGGCCCTTCG AATCCGCCCGAGCAGGCGCCCTCGGATGATAACAGCTCCATGGAAATATC CAGCGTATCCATCGATTAGTCAAATGCGTTCCAATTGTATAAATTTCTAT TTGTTTTTATGAATTATATTGGCAATCCAAGTAAATAATGAACTAGTCCT ATTCACCATTGCCAGGTCCAAAACGTCATCCTTCTCCATCATAGTTAATG AAAATATAGTATTTCACAAAACTACTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 20457821..20458826 | 1..1006 | 5030 | 100 | Plus |
chr2L | 23010047 | chr2L | 20448704..20449712 | 1..1006 | 4950 | 99.6 | Plus |
chr2L | 23010047 | chr2L | 20459546..20460164 | 1608..2226 | 3095 | 100 | Plus |
chr2L | 23010047 | chr2L | 20458882..20459485 | 1004..1607 | 3020 | 100 | Plus |
chr2L | 23010047 | chr2L | 20449768..20449848 | 1004..1084 | 405 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 20459386..20460391 | 1..1006 | 5030 | 100 | Plus |
2L | 23513712 | 2L | 20450269..20451277 | 1..1006 | 4950 | 99.6 | Plus |
2L | 23513712 | 2L | 20461111..20461732 | 1608..2229 | 3110 | 100 | Plus |
2L | 23513712 | 2L | 20460447..20461050 | 1004..1607 | 3020 | 100 | Plus |
2L | 23513712 | 2L | 20451333..20451413 | 1004..1084 | 405 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 20459386..20460391 | 1..1006 | 5030 | 100 | Plus |
2L | 23513712 | 2L | 20450269..20451277 | 1..1006 | 4960 | 99.6 | Plus |
2L | 23513712 | 2L | 20461111..20461732 | 1608..2229 | 3110 | 100 | Plus |
2L | 23513712 | 2L | 20460447..20461050 | 1004..1607 | 3020 | 100 | Plus |
2L | 23513712 | 2L | 20451333..20451413 | 1004..1084 | 405 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
transib2 | 2844 | transib2 TRANSIB2 2844bp | 1337..1404 | 1072..1139 | 115 | 63.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 20457821..20458825 | 1..1005 | 100 | -> | Plus |
chr2L | 20458884..20459485 | 1006..1607 | 100 | -> | Plus |
chr2L | 20459546..20460164 | 1608..2226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cdc23-RA | 1..2037 | 33..2069 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cdc23-RA | 1..2037 | 33..2069 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cdc23-RA | 1..2037 | 33..2069 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cdc23-RA | 1..2037 | 33..2069 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cdc23-RA | 1..2037 | 33..2069 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cdc23-RA | 1..2217 | 10..2226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cdc23-RA | 1..2217 | 10..2226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cdc23-RA | 45..2270 | 1..2226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cdc23-RA | 1..2217 | 10..2226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cdc23-RA | 45..2270 | 1..2226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20459386..20460390 | 1..1005 | 100 | -> | Plus |
2L | 20460449..20461050 | 1006..1607 | 100 | -> | Plus |
2L | 20461111..20461729 | 1608..2226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20459386..20460390 | 1..1005 | 100 | -> | Plus |
2L | 20460449..20461050 | 1006..1607 | 100 | -> | Plus |
2L | 20461111..20461729 | 1608..2226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20459386..20460390 | 1..1005 | 100 | -> | Plus |
2L | 20460449..20461050 | 1006..1607 | 100 | -> | Plus |
2L | 20461111..20461729 | 1608..2226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 20459386..20460390 | 1..1005 | 100 | -> | Plus |
arm_2L | 20460449..20461050 | 1006..1607 | 100 | -> | Plus |
arm_2L | 20461111..20461729 | 1608..2226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20459386..20460390 | 1..1005 | 100 | -> | Plus |
2L | 20460449..20461050 | 1006..1607 | 100 | -> | Plus |
2L | 20461111..20461729 | 1608..2226 | 100 | Plus |
Translation from 2 to 2068
> LD09850.hyp FIAFPNKSGTMAMQKFFSVLLPDVKRELRRGIIECSKRGLLHSTKWLAEM HHGLADVHIDNEAPDEDRTFSECQLEGIAPEEYSDYFLAKSYYDVREYDR AAHAVRNCESSVPRFLHFYSSYMAREKRRLDSTTDQANLHEPNQMRDLAD LLATLRMEYGKSRLDGYGIYLYGVVLKALNLNQAAEQMLVQAIRLVPMLW SAYLELSPLIMEKKKLLSLQLGGHWMRHFFMAHTYLELYLNDDGLKIYED LQASGFSKSIYLIAQMALVYHNKRDVDKAIELYQALLESDPYRLDNVDTY SNLLFVKEMKTEMAQLAHKAVSINKYRPETCCVIGNYYSIRCDHQVAISY FQRALKLNPKYLAAWTLMGHEFMELKNTNAAIQSYRKAVEVNKRDYRAWY GLGQAYEIIKMHYYSLYYFKIAHQLRPYDSRMLVALGETYEKLDKCENAV KCYWKAIDVGDIEGIAMYKLANLHEKLGDHETAVHCYIMYCEDERAATDK QSLYQGFITLANYYEKKGEYERAAYYAYKCLDSEDRKMEAKALLKTIDWK RNAEGQKKVKTSTAVANADTSSEDEMEWELQDVRVRVPITSIATTTTSTT TVAAESASSSSLISLRPDRNLIQGMRRSQSSRTSLTAPASGTTTTPSATA VTMSTEETPGTSGGPSNPPEQAPSDDNSSMEISSVSID*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cdc23-PB | 678 | CG2508-PB | 1..678 | 11..688 | 3528 | 100 | Plus |
Cdc23-PA | 678 | CG2508-PA | 1..678 | 11..688 | 3528 | 100 | Plus |
CG31687-PB | 351 | CG31687-PB | 1..351 | 11..360 | 1809 | 99.4 | Plus |
CG31687-PC | 351 | CG31687-PC | 1..351 | 11..360 | 1809 | 99.4 | Plus |
Cdc27-PB | 900 | CG8610-PB | 576..801 | 259..484 | 282 | 25.9 | Plus |
Translation from 32 to 2068
> LD09850.pep MAMQKFFSVLLPDVKRELRRGIIECSKRGLLHSTKWLAEMHHGLADVHID NEAPDEDRTFSECQLEGIAPEEYSDYFLAKSYYDVREYDRAAHAVRNCES SVPRFLHFYSSYMAREKRRLDSTTDQANLHEPNQMRDLADLLATLRMEYG KSRLDGYGIYLYGVVLKALNLNQAAEQMLVQAIRLVPMLWSAYLELSPLI MEKKKLLSLQLGGHWMRHFFMAHTYLELYLNDDGLKIYEDLQASGFSKSI YLIAQMALVYHNKRDVDKAIELYQALLESDPYRLDNVDTYSNLLFVKEMK TEMAQLAHKAVSINKYRPETCCVIGNYYSIRCDHQVAISYFQRALKLNPK YLAAWTLMGHEFMELKNTNAAIQSYRKAVEVNKRDYRAWYGLGQAYEIIK MHYYSLYYFKIAHQLRPYDSRMLVALGETYEKLDKCENAVKCYWKAIDVG DIEGIAMYKLANLHEKLGDHETAVHCYIMYCEDERAATDKQSLYQGFITL ANYYEKKGEYERAAYYAYKCLDSEDRKMEAKALLKTIDWKRNAEGQKKVK TSTAVANADTSSEDEMEWELQDVRVRVPITSIATTTTSTTTVAAESASSS SLISLRPDRNLIQGMRRSQSSRTSLTAPASGTTTTPSATAVTMSTEETPG TSGGPSNPPEQAPSDDNSSMEISSVSID*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15120-PA | 675 | GF15120-PA | 1..675 | 3..678 | 3019 | 87.2 | Plus |
Dana\GF23866-PA | 908 | GF23866-PA | 584..762 | 249..427 | 278 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21234-PA | 677 | GG21234-PA | 1..677 | 1..678 | 3407 | 95 | Plus |
Dere\GG14987-PA | 903 | GG14987-PA | 579..838 | 249..474 | 277 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10134-PA | 707 | GH10134-PA | 1..707 | 3..678 | 2932 | 79.5 | Plus |
Dgri\GH16207-PA | 915 | GH16207-PA | 544..816 | 199..474 | 272 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cdc23-PB | 678 | CG2508-PB | 1..678 | 1..678 | 3528 | 100 | Plus |
Cdc23-PA | 678 | CG2508-PA | 1..678 | 1..678 | 3528 | 100 | Plus |
CG31687-PB | 351 | CG31687-PB | 1..351 | 1..350 | 1809 | 99.4 | Plus |
CG31687-PC | 351 | CG31687-PC | 1..351 | 1..350 | 1809 | 99.4 | Plus |
Cdc27-PB | 900 | CG8610-PB | 576..801 | 249..474 | 282 | 25.9 | Plus |
Cdc27-PA | 900 | CG8610-PA | 576..801 | 249..474 | 282 | 25.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22203-PA | 701 | GI22203-PA | 1..701 | 3..678 | 2928 | 79.7 | Plus |
Dmoj\GI13353-PA | 925 | GI13353-PA | 601..826 | 249..474 | 261 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26609-PA | 681 | GL26609-PA | 1..681 | 3..678 | 2999 | 86.1 | Plus |
Dper\GL24900-PA | 932 | GL24900-PA | 575..833 | 216..474 | 298 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28992-PA | 681 | GA28992-PA | 1..681 | 3..678 | 3007 | 86.4 | Plus |
Dpse\GA21205-PA | 932 | GA21205-PA | 575..833 | 216..474 | 298 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23349-PA | 678 | GM23349-PA | 1..678 | 1..678 | 3629 | 98.7 | Plus |
Dsec\GM13783-PA | 311 | GM13783-PA | 2..165 | 264..427 | 272 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24259-PA | 678 | GD24259-PA | 1..678 | 1..678 | 3620 | 98.4 | Plus |
Dsim\GD13080-PA | 900 | GD13080-PA | 576..835 | 249..474 | 267 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20073-PA | 691 | GJ20073-PA | 1..691 | 3..678 | 2999 | 82.8 | Plus |
Dvir\GJ13183-PA | 926 | GJ13183-PA | 617..827 | 264..474 | 269 | 27.2 | Plus |